mRNA_H-canaliculatus_F_contig10093.121.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10093.121.1
Unique NamemRNA_H-canaliculatus_F_contig10093.121.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10093.121.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10093contigH-canaliculatus_F_contig10093:57..1192 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size664
Cds size372
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10093.121.1prot_H-canaliculatus_F_contig10093.121.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10093 301..1144 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928637.103203-UTR-H-canaliculatus_F_contig10093:56..3001622928637.103203-UTR-H-canaliculatus_F_contig10093:56..300Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10093 57..300 -
1696845506.6672845-UTR-H-canaliculatus_F_contig10093:56..3001696845506.6672845-UTR-H-canaliculatus_F_contig10093:56..300Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10093 57..300 -
1622928637.172829-UTR-H-canaliculatus_F_contig10093:1144..11921622928637.172829-UTR-H-canaliculatus_F_contig10093:1144..1192Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10093 1145..1192 -
1696845506.7081308-UTR-H-canaliculatus_F_contig10093:1144..11921696845506.7081308-UTR-H-canaliculatus_F_contig10093:1144..1192Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10093 1145..1192 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928637.130329-CDS-H-canaliculatus_F_contig10093:300..3121622928637.130329-CDS-H-canaliculatus_F_contig10093:300..312Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10093 301..312 -
1696845506.676883-CDS-H-canaliculatus_F_contig10093:300..3121696845506.676883-CDS-H-canaliculatus_F_contig10093:300..312Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10093 301..312 -
1622928637.1485887-CDS-H-canaliculatus_F_contig10093:336..6571622928637.1485887-CDS-H-canaliculatus_F_contig10093:336..657Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10093 337..657 -
1696845506.6888945-CDS-H-canaliculatus_F_contig10093:336..6571696845506.6888945-CDS-H-canaliculatus_F_contig10093:336..657Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10093 337..657 -
1622928637.160402-CDS-H-canaliculatus_F_contig10093:1105..11441622928637.160402-CDS-H-canaliculatus_F_contig10093:1105..1144Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10093 1106..1144 -
1696845506.6998727-CDS-H-canaliculatus_F_contig10093:1105..11441696845506.6998727-CDS-H-canaliculatus_F_contig10093:1105..1144Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10093 1106..1144 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10093.121.1

>prot_H-canaliculatus_F_contig10093.121.1 ID=prot_H-canaliculatus_F_contig10093.121.1|Name=mRNA_H-canaliculatus_F_contig10093.121.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=124bp
MALLRPISLPAEEAPASTHAPVSMLSAMVHGLPGYGWPYVKKDVIREAAL
RNCRQQVSRLVSFGCRPGSPAVPFFSRARQISSSLLRATNPFFKSFSLSD
RCGLWRSSTPACLNRINIRRPPS*
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mRNA from alignment at H-canaliculatus_F_contig10093:57..1192-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10093.121.1 ID=mRNA_H-canaliculatus_F_contig10093.121.1|Name=mRNA_H-canaliculatus_F_contig10093.121.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1136bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10093:57..1192- (Hapterophycus canaliculatus Oshoro5f female)
AATAGTTACCAGGAGGCGTTGCTCAAGGATGTGATCCAGCTGCAGACGAT
GGCGCTGCTCCGGCCCATCTCTCTGCCTGCCGAGGAGGTGAGCGGCTGAC
GATGACAGGGGCGCACCTCGCCACACCTCTTTCTCTGTCTGCTTCTCCTT
CTCTTTCTCTTTCCCCTGTTTTGCTTGGTCCCAACGAATCCACTCCGTGG
ACGCACGGATCGCGCTGTTCGGGCGGCGCACGCGCTGTGAGCTATCCTAT
CCTACCGCACAGCCGGGGGGTTTGCAGGGGACGGTACCGCTGTACACTTG
TACCCGCACTGTACCTTTTCTCGTCTTCTCCTCGGTTGTCGTTGTTTGTG
TCTCCCCTCCCCTCTATTCAGGGGACCAGCCAACACCTTAAACCAGTCCG
CACCTTTCGGGTACACCTTAAACCAATCCAGACCTTTCGGGTACACCTTA
GGGTCAACCCGGTGGCGGGTTTTCACCGAACACAGAACACACGATCTCTA
CGTCTCCCCTCGGCTGTTTTGTCCATCGCTCTTAGGCGCCGGCGAGTACC
CACGCGCCGGTCAGTATGCTCTCGGCCATGGTGCACGGTCTGCCAGGGTA
TGGGTGGCCGTACGTAAAGAAGGACGTCATTCGCGAGGCCGCCCTACGTA
ACTGCCGTCAGCAGGTTTCTCGGCTAGTCTCGTTTGGGTGTCGCCCGGGG
TCTCCAGCAGTTCCTTTTTTCAGCAGAGCACGACAAATCAGTTCCTCTCT
GCTGCGTGCCACAAATCCTTTTTTCAAATCCTTCTCTCTCTCTGACCGTT
GCGGTTTGTGGAGATCTAGTACACCTGCGTGCCTGAACCGCATCAATATT
CGGCGTGCCTGGAACCAGAATCTTGCTGAGCCTCCTTCTTGATGGAGAAA
CGCCCGTTGGGTTCGAACCTCAAACTTATGATGGCAATGAGGAAGAGGCT
CAGCCCGGGGGCGGATTGCCTTCGCAGCCGGTATACCCGCGGCGCCGAGG
AGTTCCCACCGACCACCGTACCCCCTCCAAGAGTCGTCCCGGCTTAGATG
AGCCGCTCCGCACGAGTGACCCCGTTTCATGGAGATCTCCCCCCCCCCCA
CAAGAGCAGCCTGCTACCAGCGAACATCCCCGCTAC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10093:57..1192-

>mRNA_H-canaliculatus_F_contig10093.121.1 ID=mRNA_H-canaliculatus_F_contig10093.121.1|Name=mRNA_H-canaliculatus_F_contig10093.121.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=744bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10093:57..1192- (Hapterophycus canaliculatus Oshoro5f female)
ATGGCGCTGCTCCGGCCCATCTCTCTGCCTGCCGAGGAGATGGCGCTGCT
CCGGCCCATCTCTCTGCCTGCCGAGGAGGCGCCGGCGAGTACCCACGCGC
CGGTCAGTATGCTCTCGGCCATGGTGCACGGTCTGCCAGGGTATGGGTGG
CCGTACGTAAAGAAGGACGTCATTCGCGAGGCCGCCCTACGTAACTGCCG
TCAGCAGGTTTCTCGGCTAGTCTCGTTTGGGTGTCGCCCGGGGTCTCCAG
CAGTTCCTTTTTTCAGCAGAGCACGACAAATCAGTTCCTCTCTGCTGCGT
GCCACAAATCCTTTTTTCAAATCCTTCTCTCTCTCTGACCGTTGCGGTTT
GTGGAGATCTAGTACACCTGCGTGCCTGAACCGCATCAATATTCGGCGTG
CGCCGGCGAGTACCCACGCGCCGGTCAGTATGCTCTCGGCCATGGTGCAC
GGTCTGCCAGGGTATGGGTGGCCGTACGTAAAGAAGGACGTCATTCGCGA
GGCCGCCCTACGTAACTGCCGTCAGCAGGTTTCTCGGCTAGTCTCGTTTG
GGTGTCGCCCGGGGTCTCCAGCAGTTCCTTTTTTCAGCAGAGCACGACAA
ATCAGTTCCTCTCTGCTGCGTGCCACAAATCCTTTTTTCAAATCCTTCTC
TCTCTCTGACCGTTGCGGTTTGTGGAGATCTAGTACACCTGCGTGCCTGA
ACCGCATCAATATTCGGCGTCCTCCTTCTTGACCTCCTTCTTGA
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