mRNA_H-canaliculatus_F_contig10092.120.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10092.120.1
Unique NamemRNA_H-canaliculatus_F_contig10092.120.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10092.120.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10092contigH-canaliculatus_F_contig10092:2128..2762 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size635
Cds size339
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928637.049424-CDS-H-canaliculatus_F_contig10092:2127..24661622928637.049424-CDS-H-canaliculatus_F_contig10092:2127..2466Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10092 2128..2466 +
1696845506.6446123-CDS-H-canaliculatus_F_contig10092:2127..24661696845506.6446123-CDS-H-canaliculatus_F_contig10092:2127..2466Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10092 2128..2466 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928637.0639389-UTR-H-canaliculatus_F_contig10092:2466..27621622928637.0639389-UTR-H-canaliculatus_F_contig10092:2466..2762Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10092 2467..2762 +
1696845506.6589704-UTR-H-canaliculatus_F_contig10092:2466..27621696845506.6589704-UTR-H-canaliculatus_F_contig10092:2466..2762Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10092 2467..2762 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10092.120.1prot_H-canaliculatus_F_contig10092.120.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10092 2128..2466 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10092.120.1

>prot_H-canaliculatus_F_contig10092.120.1 ID=prot_H-canaliculatus_F_contig10092.120.1|Name=mRNA_H-canaliculatus_F_contig10092.120.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=113bp
APSSLTRANPTPVINAKSHRRRFCLNDRQVVGDASGPERQGSAGGGATSC
RFDQHPCNALRSIWCAREQGRICVRDAGTRIRPAHPRLIRAGGLSVVENP
DGTRREYSSCLA*
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mRNA from alignment at H-canaliculatus_F_contig10092:2128..2762+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10092.120.1 ID=mRNA_H-canaliculatus_F_contig10092.120.1|Name=mRNA_H-canaliculatus_F_contig10092.120.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=635bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10092:2128..2762+ (Hapterophycus canaliculatus Oshoro5f female)
GCACCTTCGTCGCTTACTCGAGCGAATCCAACCCCCGTGATTAACGCGAA
GAGTCACCGCAGACGGTTTTGCCTCAACGACAGACAGGTGGTGGGTGATG
CATCAGGACCAGAGCGTCAAGGCAGCGCGGGCGGGGGCGCGACTTCGTGC
CGCTTTGACCAGCACCCATGTAATGCACTCCGTAGTATCTGGTGCGCTCG
GGAGCAGGGACGTATCTGCGTGCGAGACGCCGGGACGCGCATCCGTCCTG
CCCACCCCCGGTTGATTCGAGCGGGGGGGCTGTCTGTCGTCGAGAACCCA
GACGGAACTAGACGGGAGTACAGTAGCTGCTTGGCGTAGGAGCGTGTGCG
GAAAGACGCCCCAAAGACTTGCCATGCCAGCGCTGCTGCTGCTGCCGCTA
TTGTTGCTTCCGCTGGAAGCCTGTAGTTTCAAGTGTTGATTTCCCTCCGT
CCTTGCACAAACAAAACACAGCACGAGCAGGACAAGAGGAGAAAGCGTAG
AAAACACAACACGCCGTACGGGCGTCCGACGGGGGGTGAAAGAAGACTCC
CCCGACGACAACAAGAAGCAACAAGGAGGAGAAGAAAGCCCAAAATAAAC
GGAATCGTTTGTAGTTGTTGTACACAACACCCCCC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10092:2128..2762+

>mRNA_H-canaliculatus_F_contig10092.120.1 ID=mRNA_H-canaliculatus_F_contig10092.120.1|Name=mRNA_H-canaliculatus_F_contig10092.120.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=678bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10092:2128..2762+ (Hapterophycus canaliculatus Oshoro5f female)
GCACCTTCGTCGCTTACTCGAGCGAATCCAACCCCCGTGATTAACGCGAA
GAGTCACCGCAGACGGTTTTGCCTCAACGACAGACAGGTGGTGGGTGATG
CATCAGGACCAGAGCGTCAAGGCAGCGCGGGCGGGGGCGCGACTTCGTGC
CGCTTTGACCAGCACCCATGTAATGCACTCCGTAGTATCTGGTGCGCTCG
GGAGCAGGGACGTATCTGCGTGCGAGACGCCGGGACGCGCATCCGTCCTG
CCCACCCCCGGTTGATTCGAGCGGGGGGGCTGTCTGTCGTCGAGAACCCA
GACGGAACTAGACGGGAGTACAGTAGCTGCTTGGCGTAGGCACCTTCGTC
GCTTACTCGAGCGAATCCAACCCCCGTGATTAACGCGAAGAGTCACCGCA
GACGGTTTTGCCTCAACGACAGACAGGTGGTGGGTGATGCATCAGGACCA
GAGCGTCAAGGCAGCGCGGGCGGGGGCGCGACTTCGTGCCGCTTTGACCA
GCACCCATGTAATGCACTCCGTAGTATCTGGTGCGCTCGGGAGCAGGGAC
GTATCTGCGTGCGAGACGCCGGGACGCGCATCCGTCCTGCCCACCCCCGG
TTGATTCGAGCGGGGGGGCTGTCTGTCGTCGAGAACCCAGACGGAACTAG
ACGGGAGTACAGTAGCTGCTTGGCGTAG
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