mRNA_H-canaliculatus_F_contig1009.117.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1009.117.1
Unique NamemRNA_H-canaliculatus_F_contig1009.117.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1009.117.1 vs. uniprot
Match: D8LT39_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT39_ECTSI)

HSP 1 Score: 230 bits (586), Expect = 8.650e-74
Identity = 132/193 (68.39%), Postives = 151/193 (78.24%), Query Frame = 1 
Query:    1 MGMAVKKLPLSFLKDFGYLRDAQRRGLDKTTRIAERVAMVAQARAWAKWRSLANPPRSA--QSANSGITLCGAMARGYLARRRVVQMRRHIHEAAARRAEHKQHLLQRRLAKVAEASGIVASSLITNAAARKRDRVRLERAAVAMVERSYIGLKAREQGWREIVLYRKEHAAAGAIQRWTRGALVRRRIPLVS 573
            MGM  + LPLS+LKD GYL +AQRRGL+KTT I +RVA +A+ RAW KWR L  P RSA  ++  +G  LC A+ RGYLARRRV  +RR   +AAA+RAE K+ LLQRRL KV+ AS IVAS LI NA AR+R+R RL RAAVAMVER+YI  KAREQGWREIVLYRKEHAAAG IQRWTRG LVRRR PLVS
Sbjct:    1 MGMTARTLPLSYLKDIGYLGEAQRRGLEKTTNIVKRVATIAKLRAWQKWRQLGVPKRSAGKKATTTGNILCAAVTRGYLARRRVAMIRRERAKAAAQRAELKRSLLQRRLVKVSAASRIVASCLIANAWARRRERRRLVRAAVAMVERNYIARKAREQGWREIVLYRKEHAAAGMIQRWTRGVLVRRRTPLVS 193
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1009.117.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LT39_ECTSI8.650e-7468.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1009contigH-canaliculatus_F_contig1009:14033..15453 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-08_004040.1
Exons3
Model size573
Cds size573
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1009.117.1prot_H-canaliculatus_F_contig1009.117.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1009 14033..15453 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928636.6307235-CDS-H-canaliculatus_F_contig1009:14032..141761622928636.6307235-CDS-H-canaliculatus_F_contig1009:14032..14176Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1009 14033..14176 -
1696845506.4256077-CDS-H-canaliculatus_F_contig1009:14032..141761696845506.4256077-CDS-H-canaliculatus_F_contig1009:14032..14176Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1009 14033..14176 -
1622928636.6500041-CDS-H-canaliculatus_F_contig1009:14770..150561622928636.6500041-CDS-H-canaliculatus_F_contig1009:14770..15056Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1009 14771..15056 -
1696845506.4383056-CDS-H-canaliculatus_F_contig1009:14770..150561696845506.4383056-CDS-H-canaliculatus_F_contig1009:14770..15056Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1009 14771..15056 -
1622928636.66281-CDS-H-canaliculatus_F_contig1009:15310..154531622928636.66281-CDS-H-canaliculatus_F_contig1009:15310..15453Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1009 15311..15453 -
1696845506.447663-CDS-H-canaliculatus_F_contig1009:15310..154531696845506.447663-CDS-H-canaliculatus_F_contig1009:15310..15453Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1009 15311..15453 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1009.117.1

>prot_H-canaliculatus_F_contig1009.117.1 ID=prot_H-canaliculatus_F_contig1009.117.1|Name=mRNA_H-canaliculatus_F_contig1009.117.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=191bp
MGMAVKKLPLSFLKDFGYLRDAQRRGLDKTTRIAERVAMVAQARAWAKWR
SLANPPRSAQSANSGITLCGAMARGYLARRRVVQMRRHIHEAAARRAEHK
QHLLQRRLAKVAEASGIVASSLITNAAARKRDRVRLERAAVAMVERSYIG
LKAREQGWREIVLYRKEHAAAGAIQRWTRGALVRRRIPLVS
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mRNA from alignment at H-canaliculatus_F_contig1009:14033..15453-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1009.117.1 ID=mRNA_H-canaliculatus_F_contig1009.117.1|Name=mRNA_H-canaliculatus_F_contig1009.117.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1421bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1009:14033..15453- (Hapterophycus canaliculatus Oshoro5f female)
ATGGGGATGGCGGTGAAAAAGCTACCGCTGAGCTTCCTGAAAGACTTCGG
CTACCTGCGGGACGCGCAGAGGAGAGGGCTCGACAAGACGACGAGAATTG
CGGAGAGGGTGGCCATGGTCGCCCAGGCTCGTGCGTGGGCGAAGTAAGCG
AGAGCAGCGCGAGTTGATTTTGTCTTTCTCACGATAGCACTCGCTGGCAT
TTCGACGGTACGGGATTGCGACATTTTTGCGGCGAAGATAACGCTCGGCG
CACCGGTGTGACGAAGAAGTTTGTCGAAAACCTGAAGCCGTGCAGAAAAA
CTTTTCTTTGGTTTTATTTCTGCGTGGCAACTTGAGTAGGGTACCGCAAC
TTCGCAGGGCACCGTTGAAGTTGAACCCTCTCCCTTGTCATCTGTAGGTG
GCGGAGTCTCGCGAATCCCCCCCGTTCGGCGCAGTCCGCCAACTCAGGCA
TCACCCTTTGCGGTGCTATGGCACGAGGCTATCTGGCTAGGAGGCGTGTT
GTCCAGATGCGGAGACATATCCACGAAGCGGCCGCGCGAAGGGCGGAACA
CAAGCAGCACCTGCTGCAGCGTCGCTTGGCCAAGGTGGCAGAGGCATCGG
GTATCGTGGCCTCATCCTTGATCACCAACGCCGCGGCGCGGAAGAGGGAT
AGAGTTCGGCTTGAAAGAGCGGCCGTGGCCATGGTGAGGGGGACGAGGTA
CTACACTGTGTTGTAACTCAGTACGAATCAGAATAGGTAATGTGTGAGAG
GCACTGCGTCTTCCCTGAGTTGGCGACCCTGGGTCGTACACAACCAGTGA
GAAATATGTTTCAACCATAGAGGCAGCACTCACAGAACATAGAACAGAGC
AGGACAGAGCAACCCCGTATTGTGACGCATAAGTACACACACACAGCACG
ACATTAACCTTCTCTCATCGAGGCTTGGCCGTGATGTACGAGTTTGATTG
TCTGAAGGCTGAACCGTTTACTAGAGATTTTTCCTGGGGTGGTGGCTAGA
ATCGCCTTCTAGGCGTAGATGGGATTTGTCCAAAGGCGGGAGCAGCGTAG
TGACAATTCAGTACGTCCGTACAATCGCCGGGTGCTCCACGGCAATGCGT
AAGAGGTTGAGACCATGGATTTAGCAGGCGAACTACCAGGTATGCACTGC
CCTTCGATCACCAGCTGTGTACAAACGAAGCTCAACACAAAGAAGAACAG
CTATAAGGTCGCTTGATACCCATAGCGTTTCTCTCGGCTGCCGAAAGAAT
ACGTCACAAACCATTTTGTTCTGTCAGGTGGAACGTAGCTACATAGGTCT
CAAGGCTAGAGAGCAAGGGTGGCGAGAGATCGTGCTTTATCGCAAAGAGC
ATGCCGCAGCGGGTGCGATCCAGCGCTGGACTCGCGGTGCCCTCGTAAGG
CGCCGGATTCCGCTGGTGAGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1009:14033..15453-

>mRNA_H-canaliculatus_F_contig1009.117.1 ID=mRNA_H-canaliculatus_F_contig1009.117.1|Name=mRNA_H-canaliculatus_F_contig1009.117.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1146bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1009:14033..15453- (Hapterophycus canaliculatus Oshoro5f female)
ATGGGGATGGCGGTGAAAAAGCTACCGCTGAGCTTCCTGAAAGACTTCGG
CTACCTGCGGGACGCGCAGAGGAGAGGGCTCGACAAGACGACGAGAATTG
CGGAGAGGGTGGCCATGGTCGCCCAGGCTCGTGCGTGGGCGAAATGGGGA
TGGCGGTGAAAAAGCTACCGCTGAGCTTCCTGAAAGACTTCGGCTACCTG
CGGGACGCGCAGAGGAGAGGGCTCGACAAGACGACGAGAATTGCGGAGAG
GGTGGCCATGGTCGCCCAGGCTCGTGCGTGGGCGAAGTGGCGGAGTCTCG
CGAATCCCCCCCGTTCGGCGCAGTCCGCCAACTCAGGCATCACCCTTTGC
GGTGCTATGGCACGAGGCTATCTGGCTAGGAGGCGTGTTGTCCAGATGCG
GAGACATATCCACGAAGCGGCCGCGCGAAGGGCGGAACACAAGCAGCACC
TGCTGCAGCGTCGCTTGGCCAAGGTGGCAGAGGCATCGGGTATCGTGGCC
TCATCCTTGATCACCAACGCCGCGGCGCGGAAGAGGGATAGAGTTCGGCT
TGAAAGAGCGGCCGTGGCCATGGTGGCGGAGTCTCGCGAATCCCCCCCGT
TCGGCGCAGTCCGCCAACTCAGGCATCACCCTTTGCGGTGCTATGGCACG
AGGCTATCTGGCTAGGAGGCGTGTTGTCCAGATGCGGAGACATATCCACG
AAGCGGCCGCGCGAAGGGCGGAACACAAGCAGCACCTGCTGCAGCGTCGC
TTGGCCAAGGTGGCAGAGGCATCGGGTATCGTGGCCTCATCCTTGATCAC
CAACGCCGCGGCGCGGAAGAGGGATAGAGTTCGGCTTGAAAGAGCGGCCG
TGGCCATGGTGGAACGTAGCTACATAGGTCTCAAGGCTAGAGAGCAAGGG
TGGCGAGAGATCGTGCTTTATCGCAAAGAGCATGCCGCAGCGGGTGCGAT
CCAGCGCTGGACTCGCGGTGCCCTCGTAAGGCGCCGGATTCCGCTGGTGA
GCGTGGAACGTAGCTACATAGGTCTCAAGGCTAGAGAGCAAGGGTGGCGA
GAGATCGTGCTTTATCGCAAAGAGCATGCCGCAGCGGGTGCGATCCAGCG
CTGGACTCGCGGTGCCCTCGTAAGGCGCCGGATTCCGCTGGTGAGC
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