mRNA_H-canaliculatus_F_contig1009.116.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig1009.116.1 vs. uniprot
Match: D8LT38_ECTSI (B box-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT38_ECTSI) HSP 1 Score: 921 bits (2380), Expect = 0.000e+0 Identity = 542/773 (70.12%), Postives = 613/773 (79.30%), Query Frame = 1 Query: 1 MQTRRWVLMLQNIVRGWIGRRMAQSRIAHAQRLGEERVSGAVRWNQLARRREEEELINGARSEDLADDLELHRTFMKYCRFGDRRNTGRMVVAKLTALCKDAGIIDKRFPVQRVEISFSRLKPKDLSHLPYSSFLAALDDIATQHSDVRRLADAAAAATLEEGVAVLVRPTAAASVAIQSVEICSEDASGQASGRRPESGXXXXXXXXPGIAGKKKSKGNSITTTPASRQHTKSSPSAKKVGVAK------GDARVAVAAVAASASSLGSAAAERNPVAGFRPDDQRLLVLLQKYILVKSHAGKEACSEMAAVGRGARDRALARLEVAAVVIQARVARGCVGRTLAREARERQEVARQYAMLNWAASLLQTRFRAFAAQTRVSKMAVKRYYRCLDDLTGAEYYFDPKTGKAWWTKPKILGKFDIPTAVVVPAGEEIMVPMCHECADXXXXXXXXXXXXXXXXXXXVDRLHRAGNAASHLRVLIXXXXXXXXXXXXXXXXXXXDNFCVSCFAHLHRKGRLRRHTFEPLVAMCHDCGDRAQAFRCFGCEAEGRLLLCKPCLEVRHAGLLPYQFDDHRVEAVGLRSMKVKRMREEKTARAKELWMKAESAAAGKRMRDKLMLAAAIKIQAVWRGYLARKRRKHLMGEHLLWKMQRLRDDQARNTKTIRKKRSYKIARFLGRARLLKSDTNQEIVLKQ---WWQSTIMDIVRPTIGWYQGAKMVREQEFFAKKTRRKGRWRVHLARLRLGGALLRLKVARLKQHKRERQHARALEVY 2292 MQTRRWV+ LQ + RGW+GRR AQ R + Q LGEER +G VRW QL RRRE+EEL+NGARSEDL DDLELHRTFMKYCRFGDRRNTGRMVVAKLTALCKDAGIIDKRFPVQRVEISFSRLKP+DLSHLPY SFLAALDDI TQH D+RRL DAAAAA EE VAVLVR A+ A+ S+ + +RP + P A K+S+ + T + K++ + + G A G A VA A+ + AE + GFRPDDQRLLVLLQK++ V S AGKEACSEM A GRGAR RAL RLE AA+V+QA VARGC GR LAREA R+E+ R A LNWAASLLQTR RAFAA+TR +K+A+KRYYRCLD LTGAEYYFDPKTGK+ WTKPKILGKFDI TAVVVPAGEEIMVPMCHECA XXXXXXXXXXXXXXXXXXXVDR+HR GNA++HLRV I XXXXXXXXXXXXXXXXX DNFCVSCFAH+HRKGR+RRHTFEPLV MCHDCGDRAQAF+CFGC+ EG LLLCK CLE RH LLP Q +HR+EAVG RS+K+KR++EE+++RA+ELWMKAESAA GKR RDK MLAAAIKIQAVWRGYLARKRR+HLM +HLLWK+QR +DDQ IRKK +YK+AR+ G+ARLLKSDTNQEIVLKQ WWQSTIMDIVRPT GW++GAKMVREQEFFAKKT+RKGRW+VH ARLRLGG L+RL++ KQ K ER +A+ VY Sbjct: 1 MQTRRWVIGLQALTRGWLGRRRAQFRRTYTQHLGEERAAGRVRWKQLIRRREDEELLNGARSEDLDDDLELHRTFMKYCRFGDRRNTGRMVVAKLTALCKDAGIIDKRFPVQRVEISFSRLKPRDLSHLPYPSFLAALDDIGTQHPDLRRLGDAAAAAAQEESVAVLVRAIPGATTAVSSLVEADRGSGVGKKSKRPYNRSARGEATSPTNADGKRSRAENSRTPTTENRAEKAAKLSGRPGAAGAKSPAGGGATAKVAGAKAAXXXXTAETAEVECLGGFRPDDQRLLVLLQKFVFVNSQAGKEACSEMEAEGRGARRRALDRLEAAAMVVQACVARGCSGRALAREASGRRELHRHDARLNWAASLLQTRMRAFAARTRAAKLAMKRYYRCLDGLTGAEYYFDPKTGKSSWTKPKILGKFDISTAVVVPAGEEIMVPMCHECAXXXXXXXXXXXXXXXXXXXXVDRIHRTGNASTHLRVPIEXXXXXXXXXXXXXXXXXGDNFCVSCFAHIHRKGRIRRHTFEPLVGMCHDCGDRAQAFQCFGCDTEGCLLLCKRCLEARHHYLLPDQLAEHRIEAVGFRSLKLKRLKEEQSSRARELWMKAESAATGKRSRDKKMLAAAIKIQAVWRGYLARKRRRHLMDQHLLWKIQRHKDDQ------IRKKLTYKVARYFGKARLLKSDTNQEIVLKQYPRWWQSTIMDIVRPTFGWHEGAKMVREQEFFAKKTKRKGRWKVHAARLRLGGELIRLRMESRKQRKYERLRDKAVGVY 767
BLAST of mRNA_H-canaliculatus_F_contig1009.116.1 vs. uniprot
Match: A0A6H5KU11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU11_9PHAE) HSP 1 Score: 447 bits (1151), Expect = 6.030e-147 Identity = 277/504 (54.96%), Postives = 309/504 (61.31%), Query Frame = 1 Query: 211 LHRTFMKYCRFGDRRNTGRMVVAKLTALCKDAGIIDKRFPVQRVEISFSRLKPKDLSHLPYSSFLAALDDIATQHSDVRRLADAAAAATLEEGVAVLVRPTAAASVAIQSVEICSEDASGQASGRRPESGXXXXXXXXPGIAGKKKSKG-NSITTTPASRQHTKSSPSAKKVGVAKGDARVAVAAVAASASSLG----------SAAAERNPVAGFRPDDQRLLVLLQKYILVKSHAGKEACSEMAAVGRGARDRALARLEVAAVVIQARVARGCVGRTLAREARERQEVARQYAMLNWAASLLQTRF------------------------------RAFAAQTRVSKMAVKRYYRCLDDLTGAEYYFDPKTGKAWWTKPKILGKFDIPTAVVVPAGEEIMVPMCHECADXXXXXXXXXXXXXXXXXXXVDRLHRAGNAASHLRVLIXXXXXXXXXXXXXXXXXXXDNFCVSCFAHLHRKGRLRRHTFEPLVAMCHDCGDRAQ 1599 + +TFMKYCRFGDRRNTGRMV AKL ALCKDAGIIDKRFPVQRVEISFSRLKPKDLSHLPYSSFLAALDDI TQH D+RRLADAA AA EE VAVLVR A+ A+ S+ + +RP + P A K+S+ NS T T +R A K+GV G A + E + + GFRPDDQRLLVLLQKY+ V S AGKEACSEM A GRGAR RAL RLE AAVV+QA +ARGC GR LAREA R+E+ R LNWAASLLQTR+ RAFAA+TR +KMAVKRYYRCLD LTGAEYYFDPKTGK+ W KPKILGKFDI TAVVVPAGEEIMVPMCHECA+ A+ +V + DNFCVSCFA+LHRKGR+RRHTFEPLV +CHDCGDRAQ Sbjct: 13 IMQTFMKYCRFGDRRNTGRMVAAKLAALCKDAGIIDKRFPVQRVEISFSRLKPKDLSHLPYSSFLAALDDIGTQHPDLRRLADAATAAAQEESVAVLVRAIPGATTAVSSLVEADRGSGVGKKSKRPYNRSAKGGATSPTNADGKRSRAENSRTPTTENRAEK-----AAKLGVRPGAAGAXXXXXXXXXXXXXXXXXXXXXXTAETFEVDYLGGFRPDDQRLLVLLQKYVFVNSQAGKEACSEMEAEGRGARRRALDRLEAAAVVVQACMARGCSGRALAREASGRRELDRHNTRLNWAASLLQTRWMKTHSKTRPGVARFTLRTLFVKIYCMQEQMRAFAARTRAAKMAVKRYYRCLDGLTGAEYYFDPKTGKSSWAKPKILGKFDISTAVVVPAGEEIMVPMCHECAE---------------------------EVATDFQVAVKHCQQCG------------DNFCVSCFAYLHRKGRIRRHTFEPLVGICHDCGDRAQ 472
BLAST of mRNA_H-canaliculatus_F_contig1009.116.1 vs. uniprot
Match: A0A7S0GT93_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0GT93_9EUKA) HSP 1 Score: 62.0 bits (149), Expect = 8.300e-7 Identity = 30/81 (37.04%), Postives = 49/81 (60.49%), Query Frame = 1 Query: 184 SEDLADDLELHRTFMKYCRFGDRRNTGRMVVAKLTALCKDAGIIDKRFPVQRVEISFSRLKPKDLSHLPYSSFLAALDDIA 426 +++ A L L FMK+C+FGD NTG+M AK KD GI+DK+ V++ FS++K K + +++F ++ D+A Sbjct: 129 AQNAAIGLTLKTVFMKFCKFGDPTNTGKMTGAKYFKFTKDCGIVDKKLTRTSVDLLFSKIKVKGQRTINFATFKKSMMDLA 209 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1009.116.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1009.116.1 >prot_H-canaliculatus_F_contig1009.116.1 ID=prot_H-canaliculatus_F_contig1009.116.1|Name=mRNA_H-canaliculatus_F_contig1009.116.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=765bp MQTRRWVLMLQNIVRGWIGRRMAQSRIAHAQRLGEERVSGAVRWNQLARRback to top mRNA from alignment at H-canaliculatus_F_contig1009:381..8494- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig1009.116.1 ID=mRNA_H-canaliculatus_F_contig1009.116.1|Name=mRNA_H-canaliculatus_F_contig1009.116.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=8114bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1009:381..8494- (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1009:381..8494- >mRNA_H-canaliculatus_F_contig1009.116.1 ID=mRNA_H-canaliculatus_F_contig1009.116.1|Name=mRNA_H-canaliculatus_F_contig1009.116.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=4590bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1009:381..8494- (Hapterophycus canaliculatus Oshoro5f female)back to top |