mRNA_H-canaliculatus_F_contig10089.115.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10089.115.1
Unique NamemRNA_H-canaliculatus_F_contig10089.115.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig10089.115.1 vs. uniprot
Match: D7FVY2_ECTSI (EamA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVY2_ECTSI)

HSP 1 Score: 249 bits (637), Expect = 4.700e-77
Identity = 126/148 (85.14%), Postives = 134/148 (90.54%), Query Frame = 1
Query:    1 ISFGLGFWLTERCSRKYPDEIFGLVAAQLLTVAVLAVGWCVQSGDLPLSLASLHETVLPSSGELAVPISLVWTGLVTTSLTVFGETLAMKKVSAAESTIILSTEPIWGTAFAAVLLGETIGWNTGLGALLIVSACTWTSVGPALQSRL 444
            + FGLGFWLTERCSRKYP+EIFGLVAAQLLTVAVLAVGWC Q+GDLPLSLASL ETVLPSSG LAVPISL+WTGLVTTSLTVFGET+AMKKVSAAESTIILSTEPIWGTAFAAVLLGE+IG          VSACTWTSVGPALQS++
Sbjct:  466 LCFGLGFWLTERCSRKYPEEIFGLVAAQLLTVAVLAVGWCAQAGDLPLSLASLRETVLPSSGNLAVPISLMWTGLVTTSLTVFGETVAMKKVSAAESTIILSTEPIWGTAFAAVLLGESIGXXXXXXXXXXVSACTWTSVGPALQSKM 613          
BLAST of mRNA_H-canaliculatus_F_contig10089.115.1 vs. uniprot
Match: A0A835ZPH7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZPH7_9STRA)

HSP 1 Score: 131 bits (329), Expect = 3.030e-33
Identity = 68/142 (47.89%), Postives = 97/142 (68.31%), Query Frame = 1
Query:    1 ISFGLGFWLTERCSRKYPDEIFGLVAAQLLTVAVLAVGWCVQSGDLPLSLASLHETVLPS--SGELAVPISLVWTGLVTTSLTVFGETLAMKKVSAAESTIILSTEPIWGTAFAAVLLGETIGWNTGLGALLIVSACTWTSV 420
            + FG+GFW   + +R+ P+   GL AAQLL V+ L+  W + SG           +V+P   +G+  V ++L+WTGL+TT+LTV  ET+A+K++SAAEST+I STEP+WGTAFA  LLGE  G +T  GALLI+ AC W+++
Sbjct:  302 VCFGMGFWRMAKFARESPNHAMGLTAAQLLAVSGLSTLWAMLSGA--------DFSVVPGVLAGDARVGVALLWTGLITTALTVGFETVALKRLSAAESTVIFSTEPLWGTAFAVALLGEHAGLHTAAGALLILCACLWSTM 435          
BLAST of mRNA_H-canaliculatus_F_contig10089.115.1 vs. uniprot
Match: A0A7S0TJA2_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0TJA2_HEMAN)

HSP 1 Score: 118 bits (295), Expect = 1.810e-29
Identity = 64/149 (42.95%), Postives = 95/149 (63.76%), Query Frame = 1
Query:    1 ISFGLGFWLTERCSRKYPDEIFGLVAAQLLTVAVLAVGWCVQS--GDLPLSLASLHETVLPSSGELAVPISLVWTGLVTTSLTVFGETLAMKKVSAAESTIILSTEPIWGTAFAAVLLGETIGWNTGLGALLIVSAC-TWTSVGPALQS 438
            ++FG GFW  E   R +P +   L A QL  VA+  V W V S     P+      + ++ + G+  V ++L+WTGLVTT+LTV+ ET+A+ ++ +AE T++ STEP+WGTAFAA LLGE +G NT +G  LI++AC T T +G   ++
Sbjct:  161 LAFGAGFWKMEHAMRDHPGQGGALTAVQLAVVALCTVAWTVLSPGSGTPMGELPAIDALVAALGQSQVQMALLWTGLVTTALTVWLETVALGRLPSAEVTVLFSTEPLWGTAFAAALLGEQVGANTFVGGGLIMAACLTRTLLGEGAEA 309          
BLAST of mRNA_H-canaliculatus_F_contig10089.115.1 vs. uniprot
Match: A0A7S2UQU1_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UQU1_9STRA)

HSP 1 Score: 118 bits (295), Expect = 3.340e-29
Identity = 62/148 (41.89%), Postives = 94/148 (63.51%), Query Frame = 1
Query:    1 ISFGLGFWLTERCSRKYPDEIFGLVAAQLLTVAVLAVGWCVQSGDLPLSLASLHETVLPSSGELAVPIS-------LVWTGLVTTSLTVFGETLAMKKVSAAESTIILSTEPIWGTAFAAVLLGETIGWNTGLGALLIVSACTWTSVG 423
            ++FGLGFW  E+  +++PD+   + AAQLL V V +  +C  S        S    V+P   +L   ++       L WTGL+TT+LTV+ ETLA+K +SAAE+T+I STEP+WG+AFAA ++GE  G +  +GA LI+  C ++++G
Sbjct:  121 VAFGLGFWRMEKAMQRFPDDAARMTAAQLLAVFVSSATYCAIS-------FSKGMEVIPDMTQLTEWLTDPMILGALFWTGLITTALTVYMETLALKTLSAAETTLIFSTEPLWGSAFAAAVVGERFGMDAAIGAGLILGGCAYSNIG 261          
BLAST of mRNA_H-canaliculatus_F_contig10089.115.1 vs. uniprot
Match: A0A6S8J0W1_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A6S8J0W1_9STRA)

HSP 1 Score: 120 bits (300), Expect = 4.110e-29
Identity = 63/143 (44.06%), Postives = 95/143 (66.43%), Query Frame = 1
Query:    1 ISFGLGFWLTERCSRKYPDEIFGLVAAQLLTVAV--LAVGWCVQSGDLPLSLASLHETVLPSSGELAVPISLVWTGLVTTSLTVFGETLAMKKVSAAESTIILSTEPIWGTAFAAVLLGETIGWNTGLGALLIVSACTWTSVG 423
            ++FG+ FW  E+   KYP+E     AAQLL V +   A G+    G   ++       ++    E  V +SL WTG +TT+LT++ E+ A+K +SAAE+T+ILSTEP+WGTAFAA +LGE +G +TG+GA+LI++AC  +++G
Sbjct:  277 LAFGVAFWRMEQVMHKYPEEAKRATAAQLLAVFLGSAAYGFVTDPGFFDMT------KIIQFVSEPTVLLSLFWTGCITTALTIYMESTALKSLSAAETTLILSTEPLWGTAFAAAVLGEQVGVDTGIGAVLIIAACLVSNLG 413          
BLAST of mRNA_H-canaliculatus_F_contig10089.115.1 vs. uniprot
Match: B7GA19_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7GA19_PHATC)

HSP 1 Score: 119 bits (298), Expect = 1.490e-28
Identity = 62/141 (43.97%), Postives = 99/141 (70.21%), Query Frame = 1
Query:    1 ISFGLGFWLTERCSRKYPDEIFGLVAAQLLTVAVLAVGWCVQSGDLPLSLASLHETVLPSSGELAVPISLVWTGLVTTSLTVFGETLAMKKVSAAESTIILSTEPIWGTAFAAVLLGETIGWNTGLGALLIVSACTWTSVG 423
            I FG+ FW  E   +++P+E     AAQLL V ++++ + + +     ++A L +  L  +  LA   SL WTG ++T+LTV+ ETLA+K +SAAE+T+I STEP+WGTAFAA+++GET+GW + +GA+LI+S C ++++G
Sbjct:  337 ICFGIAFWRMEAAMQRFPNEANRSTAAQLLMVFLVSLTFGLFTDPGAFNVAQL-QAWLSDTNILA---SLFWTGCISTALTVYMETLALKTLSAAETTLIFSTEPLWGTAFAALIMGETLGWESAVGAVLILSGCVFSNLG 473          
BLAST of mRNA_H-canaliculatus_F_contig10089.115.1 vs. uniprot
Match: A0A7S1EIS4_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1EIS4_HEMAN)

HSP 1 Score: 117 bits (293), Expect = 2.080e-28
Identity = 61/137 (44.53%), Postives = 89/137 (64.96%), Query Frame = 1
Query:    1 ISFGLGFWLTERCSRKYPDEIFGLVAAQLLTVAVLAVGWCVQS--GDLPLSLASLHETVLPSSGELAVPISLVWTGLVTTSLTVFGETLAMKKVSAAESTIILSTEPIWGTAFAAVLLGETIGWNTGLGALLIVSAC 405
            ++FG GFW  E   R +P +   L A QL  VA+  V W V S     P+      + ++ + G+  V ++L+WTGLVTT+LTV+ ET+A+ ++ +AE T++ STEP+WGTAFAA LLGE +G NT +G  LI++AC
Sbjct:  279 LAFGAGFWKMEHAMRDHPGQGGALTAVQLAVVALCTVAWTVLSPGSGTPMGELPAIDALVAALGQSQVQMALLWTGLVTTALTVWLETVALGRLPSAEVTVLFSTEPLWGTAFAAALLGEQVGANTFVGGGLIMAAC 415          
BLAST of mRNA_H-canaliculatus_F_contig10089.115.1 vs. uniprot
Match: A0A1E7FCH1_9STRA (EamA domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FCH1_9STRA)

HSP 1 Score: 113 bits (282), Expect = 8.420e-28
Identity = 66/160 (41.25%), Postives = 98/160 (61.25%), Query Frame = 1
Query:    1 ISFGLGFWLTERCSRKYPDEIFGLVAAQLLTVAVLAVGWCVQSGDL--PLSLASLH------ETVLPSSGELAVP---ISLVWTGLVTTSLTVFGETLAMKKVSAAESTIILSTEPIWGTAFAAVLLGETIGWNTGLGALLIVSACTWTSVG-PALQSRL 444
             +FGLGFW  E+    YP+E   + AAQL+ V + ++ + + + D+    SLA L       ET  P       P    SL WTG +TT+LT++ ETLA++ +SA+E+T+I STEP+WGTA A  L+GE +G N  +G  LI++AC ++++G   LQS L
Sbjct:  104 FAFGLGFWRMEKAMNLYPEEAPRMTAAQLMAVFISSLMYGLYTLDVFDSTSLAGLQSSIATIETSFPWKEWFTDPSILFSLFWTGCITTALTIYMETLALETLSASETTLIFSTEPLWGTAVAVALMGEQVGMNAAVGGSLILAACLYSNLGIDGLQSML 263          
BLAST of mRNA_H-canaliculatus_F_contig10089.115.1 vs. uniprot
Match: L1IX33_GUITC (EamA domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IX33_GUITC)

HSP 1 Score: 113 bits (282), Expect = 1.280e-27
Identity = 62/141 (43.97%), Postives = 89/141 (63.12%), Query Frame = 1
Query:    1 ISFGLGFWLTERCSRKYPDEIFGLVAAQLLTVAVLAVGWC-VQSGDLPLSLASLHETVLPSSGELAVPISLVWTGLVTTSLTVFGETLAMKKVSAAESTIILSTEPIWGTAFAAVLLGETIGWNTGLGALLIVSACTWTSV 420
            I FG+GFW  E+  R +P +   L A QL+ V +  + W  V +G LP        TV  S  ++ V +S+VWTGL+TT+LTV  +T ++  +S+ E+T++ STEPIWG AFA  +LGE IG NT +G  LI++AC  +SV
Sbjct:  139 IGFGMGFWKIEKVMRNFPGKGPQLTAIQLVVVWLTGLIWALVDNGGLP-----DVATVTESLSQMPVAVSVVWTGLITTALTVLLQTTSLGVLSSTETTVLYSTEPIWGAAFAHAVLGEAIGMNTWVGGSLIIAACLCSSV 274          
BLAST of mRNA_H-canaliculatus_F_contig10089.115.1 vs. uniprot
Match: A0A1E7FD72_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FD72_9STRA)

HSP 1 Score: 115 bits (288), Expect = 1.530e-27
Identity = 60/147 (40.82%), Postives = 94/147 (63.95%), Query Frame = 1
Query:    1 ISFGLGFWLTERCSRKYPDEIFGLVAAQLLTVAVLAVGWCVQSGDLPLSLASLHETVLPSSGEL------AVPISLVWTGLVTTSLTVFGETLAMKKVSAAESTIILSTEPIWGTAFAAVLLGETIGWNTGLGALLIVSACTWTSVG 423
            ++FG+GFW  E+   +YP E   L AAQLL +   +VG+          L+S+  + L S   +      ++  SL WTG++T++LT++ E  AM+ +SAAE+T+I +TEPIWGTAFAAV++ E  G N+ +GA  I+SAC ++++G
Sbjct:  237 LAFGIGFWKVEKALERYPTEARRLTAAQLLAIFCASVGF---------GLSSIDASTLQSYPWMDWFTNPSIMFSLFWTGVITSALTIYMENKAMETLSAAEATVIFATEPIWGTAFAAVVMSEQFGMNSAVGAAFIMSACFYSNLG 374          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10089.115.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVY2_ECTSI4.700e-7785.14EamA domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A835ZPH7_9STRA3.030e-3347.89Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S0TJA2_HEMAN1.810e-2942.95Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S2UQU1_9STRA3.340e-2941.89Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A6S8J0W1_9STRA4.110e-2944.06Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
B7GA19_PHATC1.490e-2843.97Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A7S1EIS4_HEMAN2.080e-2844.53Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A1E7FCH1_9STRA8.420e-2841.25EamA domain-containing protein n=1 Tax=Fragilariop... [more]
L1IX33_GUITC1.280e-2743.97EamA domain-containing protein n=1 Tax=Guillardia ... [more]
A0A1E7FD72_9STRA1.530e-2740.82Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10089contigH-canaliculatus_F_contig10089:755..1198 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score249.6
Seed ortholog evalue9.1e-64
Seed eggNOG ortholog2880.D7FVY2
EggNOG free text desc.EamA-like transporter family
EggNOG OGs2S0YE@2759,COG0697@1
COG Functional cat.EG
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionEamA domain
Ec32 orthologEc-01_002600.1
Exons1
Model size444
Cds size444
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928636.2806842-CDS-H-canaliculatus_F_contig10089:754..11981622928636.2806842-CDS-H-canaliculatus_F_contig10089:754..1198Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10089 755..1198 +
1696845506.227233-CDS-H-canaliculatus_F_contig10089:754..11981696845506.227233-CDS-H-canaliculatus_F_contig10089:754..1198Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10089 755..1198 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10089.115.1prot_H-canaliculatus_F_contig10089.115.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10089 755..1198 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10089.115.1

>prot_H-canaliculatus_F_contig10089.115.1 ID=prot_H-canaliculatus_F_contig10089.115.1|Name=mRNA_H-canaliculatus_F_contig10089.115.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=148bp
ISFGLGFWLTERCSRKYPDEIFGLVAAQLLTVAVLAVGWCVQSGDLPLSL
ASLHETVLPSSGELAVPISLVWTGLVTTSLTVFGETLAMKKVSAAESTII
LSTEPIWGTAFAAVLLGETIGWNTGLGALLIVSACTWTSVGPALQSRL
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mRNA from alignment at H-canaliculatus_F_contig10089:755..1198+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10089.115.1 ID=mRNA_H-canaliculatus_F_contig10089.115.1|Name=mRNA_H-canaliculatus_F_contig10089.115.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=444bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10089:755..1198+ (Hapterophycus canaliculatus Oshoro5f female)
ATCAGCTTCGGCCTGGGCTTCTGGCTCACCGAGCGCTGCTCGAGGAAGTA CCCGGACGAGATCTTCGGCCTCGTGGCGGCGCAGCTCCTCACCGTGGCCG TCCTCGCCGTCGGCTGGTGCGTCCAGTCCGGGGACCTCCCGCTGTCCCTC GCCTCCCTCCACGAGACCGTTCTCCCGTCGTCGGGAGAGCTGGCCGTGCC CATCTCGCTCGTGTGGACGGGCCTCGTGACCACCTCCCTCACCGTGTTCG GGGAGACCCTCGCCATGAAGAAGGTCTCCGCCGCCGAGTCCACCATCATC CTGTCGACGGAGCCCATCTGGGGCACCGCGTTTGCGGCCGTCCTGCTGGG CGAGACGATCGGGTGGAACACGGGCCTGGGCGCGCTGCTGATCGTGTCCG CGTGCACGTGGACGTCTGTGGGCCCCGCGCTGCAGAGCAGGCTG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10089:755..1198+

>mRNA_H-canaliculatus_F_contig10089.115.1 ID=mRNA_H-canaliculatus_F_contig10089.115.1|Name=mRNA_H-canaliculatus_F_contig10089.115.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=888bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10089:755..1198+ (Hapterophycus canaliculatus Oshoro5f female)
ATCAGCTTCGGCCTGGGCTTCTGGCTCACCGAGCGCTGCTCGAGGAAGTA
CCCGGACGAGATCTTCGGCCTCGTGGCGGCGCAGCTCCTCACCGTGGCCG
TCCTCGCCGTCGGCTGGTGCGTCCAGTCCGGGGACCTCCCGCTGTCCCTC
GCCTCCCTCCACGAGACCGTTCTCCCGTCGTCGGGAGAGCTGGCCGTGCC
CATCTCGCTCGTGTGGACGGGCCTCGTGACCACCTCCCTCACCGTGTTCG
GGGAGACCCTCGCCATGAAGAAGGTCTCCGCCGCCGAGTCCACCATCATC
CTGTCGACGGAGCCCATCTGGGGCACCGCGTTTGCGGCCGTCCTGCTGGG
CGAGACGATCGGGTGGAACACGGGCCTGGGCGCGCTGCTGATCGTGTCCG
CGTGCACGTGGACGTCTGTGGGCCCCGCGCTGCAGAGCAGGCTGATCAGC
TTCGGCCTGGGCTTCTGGCTCACCGAGCGCTGCTCGAGGAAGTACCCGGA
CGAGATCTTCGGCCTCGTGGCGGCGCAGCTCCTCACCGTGGCCGTCCTCG
CCGTCGGCTGGTGCGTCCAGTCCGGGGACCTCCCGCTGTCCCTCGCCTCC
CTCCACGAGACCGTTCTCCCGTCGTCGGGAGAGCTGGCCGTGCCCATCTC
GCTCGTGTGGACGGGCCTCGTGACCACCTCCCTCACCGTGTTCGGGGAGA
CCCTCGCCATGAAGAAGGTCTCCGCCGCCGAGTCCACCATCATCCTGTCG
ACGGAGCCCATCTGGGGCACCGCGTTTGCGGCCGTCCTGCTGGGCGAGAC
GATCGGGTGGAACACGGGCCTGGGCGCGCTGCTGATCGTGTCCGCGTGCA
CGTGGACGTCTGTGGGCCCCGCGCTGCAGAGCAGGCTG
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