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Homology
BLAST of mRNA_H-canaliculatus_F_contig10086.113.1 vs. uniprot
Match: D7FHG7_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHG7_ECTSI) HSP 1 Score: 151 bits (382), Expect = 4.680e-36 Identity = 99/140 (70.71%), Postives = 101/140 (72.14%), Query Frame = 1
Query: 376 SGLEPGWYXXXXXXGXXXXXXXXXXXXXXXXXXXXXXXXXTVLWDDDYRALRARLEVPSLGFGSLRTPGQAGGVGXXXXXXXXXXXXXXXGLSLRSRLCEDLSRFLHMVTERERRTFDAKWVAYQRCRAVVRGLWPRAQV 795
SG+EPGWY G XXXXXXXXXXXXXX V WDDDY ALRARLEVPSLGFGSLR PGQ G G GLSLRSRLCEDLSRFLH+VTERERRTFDAKWVAYQRCRAVVRGLWPRAQV
Sbjct: 1574 SGVEPGWYNGGV--GWPAGTGVXXXXXXXXXXXXXXGSVGPVPWDDDYLALRARLEVPSLGFGSLRPPGQGGPAGGHKRGRSAGGGGQG-GLSLRSRLCEDLSRFLHLVTERERRTFDAKWVAYQRCRAVVRGLWPRAQV 1710
BLAST of mRNA_H-canaliculatus_F_contig10086.113.1 vs. uniprot
Match: A0A7S1XUG9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XUG9_9STRA) HSP 1 Score: 53.5 bits (127), Expect = 9.250e-5 Identity = 24/47 (51.06%), Postives = 34/47 (72.34%), Query Frame = 1
Query: 655 LRSRLCEDLSRFLHMVTERERRTFDAKWVAYQRCRAVVRGLWPRAQV 795
LRSRL ED++ F+ VT +R++ A +A + C+AVVR +WPRAQV
Sbjct: 20 LRSRLAEDIASFVEYVTRDQRKSAAANAIAIENCQAVVRTIWPRAQV 66
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 150.6 |
| Seed ortholog evalue | 1e-33 |
| Seed eggNOG ortholog | 2880.D7FHG7 |
| KEGG ko | ko:K03514,ko:K11700 |
| KEGG Pathway | ko03018,map03018 |
| KEGG Module | M00393 |
| GOs | GO:0000070,GO:0000278,GO:0000280,GO:0000819,GO:0003674,GO:0003824,GO:0004652,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005844,GO:0006139,GO:0006325,GO:0006342,GO:0006355,GO:0006378,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006996,GO:0007049,GO:0007059,GO:0007080,GO:0008150,GO:0008152,GO:0008608,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016070,GO:0016071,GO:0016458,GO:0016740,GO:0016772,GO:0016779,GO:0019219,GO:0019222,GO:0022402,GO:0030702,GO:0030880,GO:0031047,GO:0031048,GO:0031123,GO:0031124,GO:0031134,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031379,GO:0031380,GO:0032991,GO:0034641,GO:0035770,GO:0036464,GO:0040029,GO:0043170,GO:0043186,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043631,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045495,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0048285,GO:0048519,GO:0048523,GO:0050000,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051252,GO:0051253,GO:0051276,GO:0051303,GO:0051310,GO:0051315,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0060255,GO:0060293,GO:0061695,GO:0065007,GO:0070566,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0098813,GO:0140014,GO:1901360,GO:1902494,GO:1902679,GO:1903047,GO:1903506,GO:1903507,GO:1990141,GO:1990234,GO:1990758,GO:1990904,GO:2000112,GO:2000113,GO:2001141 |
| EggNOG free text desc. | RNA uridylyltransferase activity |
| EggNOG OGs | COG5260@1,KOG1906@2759 |
| EC | 2.7.7.19 |
| COG Functional cat. | L |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko00002,ko01000,ko03016,ko03019,ko03036 |
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| Model size | 1255 |
| Cds size | 798 |
| Stop | 1 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622928636.0549457-UTR-H-canaliculatus_F_contig10086:117..460 | 1622928636.0549457-UTR-H-canaliculatus_F_contig10086:117..460 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig10086 118..460 - |
| 1696845506.1346893-UTR-H-canaliculatus_F_contig10086:117..460 | 1696845506.1346893-UTR-H-canaliculatus_F_contig10086:117..460 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig10086 118..460 - |
| 1622928636.072908-UTR-H-canaliculatus_F_contig10086:502..616 | 1622928636.072908-UTR-H-canaliculatus_F_contig10086:502..616 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig10086 503..616 - |
| 1696845506.1605685-UTR-H-canaliculatus_F_contig10086:502..616 | 1696845506.1605685-UTR-H-canaliculatus_F_contig10086:502..616 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig10086 503..616 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622928636.097005-CDS-H-canaliculatus_F_contig10086:616..816 | 1622928636.097005-CDS-H-canaliculatus_F_contig10086:616..816 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10086 617..816 - |
| 1696845506.1735773-CDS-H-canaliculatus_F_contig10086:616..816 | 1696845506.1735773-CDS-H-canaliculatus_F_contig10086:616..816 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10086 617..816 - |
| 1622928636.1097336-CDS-H-canaliculatus_F_contig10086:1323..1843 | 1622928636.1097336-CDS-H-canaliculatus_F_contig10086:1323..1843 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10086 1324..1843 - |
| 1696845506.1891289-CDS-H-canaliculatus_F_contig10086:1323..1843 | 1696845506.1891289-CDS-H-canaliculatus_F_contig10086:1323..1843 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10086 1324..1843 - |
| 1622928636.1348324-CDS-H-canaliculatus_F_contig10086:2145..2223 | 1622928636.1348324-CDS-H-canaliculatus_F_contig10086:2145..2223 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10086 2146..2223 - |
| 1696845506.19892-CDS-H-canaliculatus_F_contig10086:2145..2223 | 1696845506.19892-CDS-H-canaliculatus_F_contig10086:2145..2223 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10086 2146..2223 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig10086.113.1 >prot_H-canaliculatus_F_contig10086.113.1 ID=prot_H-canaliculatus_F_contig10086.113.1|Name=mRNA_H-canaliculatus_F_contig10086.113.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=266bp
GGGGGGGGAGGYNGFRLTAPVFVPEQFTPPGAGGGSILPRTAQQPPPPPT
HQLPSPNHQQQQSPRRQQSPQHHQHPQQQRQHQGIAAQGGVASISGGGHD
RAPPARAPADAGGYAAAAPAGGGGGSGLEPGWYGGGGGAGGWAGSTGGPG
GGVGGVGVGAGGSGGTVLWDDDYRALRARLEVPSLGFGSLRTPGQAGGVG
GSSKRGGRGGGGGQGGLSLRSRLCEDLSRFLHMVTERERRTFDAKWVAYQ
RCRAVVRGLWPRAQV* back to topmRNA from alignment at H-canaliculatus_F_contig10086:118..2223- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-canaliculatus_F_contig10086.113.1 ID=mRNA_H-canaliculatus_F_contig10086.113.1|Name=mRNA_H-canaliculatus_F_contig10086.113.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2106bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10086:118..2223- (Hapterophycus canaliculatus Oshoro5f female)
GGCGGAGGCGGCGGAGGCGGGGGTGCTGGGGGATACAACGGTTTCCGGTT
AACAGCTCCGGTATTTGTGCCTGAACAGGTGAGCGGGTCGGATGAGATCC
TTGATGAGGGACACATCAGGACAGGGGTGGCCGAGGCCAGTTTTTTTTCC
TTTGCCAGGGGAAAAAAAACACGGAAAAAAAACACCCGTGCGGTCTTTGG
GGCGGGCACGTTGTCTGCTGGCGATCCTTCTTCATATTATTCTTGAGTGT
CTTGCTGTTTTGTCTGAACACCGCCCACTCTGCGTGGCCGCGCGTGTTTG
AGAGTACCCGGTCTCAGGACGGCCTCCGCCTCCCGCCCCACACCCTCACG
CATGCACACGCGCGCCGCCTCTCGCCGCAGTTCACGCCTCCAGGAGCAGG
CGGGGGGTCGATTCTCCCCCGCACGGCTCAACAGCCGCCGCCTCCGCCGA
CGCACCAACTGCCGTCGCCAAACCACCAGCAACAGCAGTCCCCGCGGCGG
CAACAATCGCCGCAGCACCACCAGCATCCACAACAGCAGCGGCAGCACCA
AGGCATCGCCGCGCAAGGAGGGGTTGCTTCGATCTCTGGAGGGGGCCACG
ACCGTGCGCCCCCTGCTCGTGCTCCTGCCGACGCCGGGGGGTACGCGGCT
GCGGCTCCGGCGGGTGGGGGTGGCGGGTCAGGCCTGGAACCCGGCTGGTA
TGGCGGCGGCGGCGGTGCGGGCGGATGGGCAGGGAGCACTGGAGGCCCCG
GAGGCGGGGTAGGTGGGGTGGGAGTCGGCGCAGGAGGCAGCGGGGGTACC
GTCCTATGGGACGACGACTACCGAGCGCTGCGGGCCAGGCTGGAGGTGCC
CTCGTTAGGCTTCGGATCTCTCAGGACTCCGGGGCAAGCGGGAGGAGTAG
GTGCGATATTGCGGTGGAGCAGGCGGAGGGAGAAGGCCGGGGGAGCGAAT
GCGCCCCAACATCGGTGTTTCCGCCGCGGTGGTTTGTGTTGTGGGGGGTG
GTGCAGCGCGTTGTCTCCTATTTGTGGTGGAAAGCACGCGGGGGTTGCGA
GCCGCTGCTTGGTGTTGTCAAGCATCTGTACGATCCTGCGAAGGCGGCGC
AGCGTGCACGCAACGCATCCAGTACGCCGCAGCTCGCGACAAGGGCAACG
AGCCTTGCACCGTCCCCCCTCCCCCCTCGCGGCGAAATCCCTTCTTATTT
GACGATGGTGGTCTGGTAGGCGAGTCACAGGCCACGCCCCCATCGCGCCG
CCCCTGGTAGAATCTCGGCGGCGGTAAACTGCAGGGTTGGAATAGACTTC
CGAGCATCCCTTTGTTGTTTTTGTCGGCGCACGCGGTGGAAAAGCTTGCT
GGAGCAGCCGATCGTCCTTACAAGTCGCCTCCTCGTCTCGATCCCACCCA
ACTGCAGGCGGGAGCTCCAAGAGAGGCGGGAGGGGAGGCGGTGGAGGCCA
GGGTGGCCTCTCGCTTCGCTCTCGGCTCTGCGAGGACCTGTCCCGCTTCC
TGCACATGGTCACGGAGAGAGAGAGGAGGACGTTCGACGCCAAGTGGGTC
GCGTACCAGCGCTGCAGAGCGGTCGTGCGCGGACTCTGGCCGCGAGCTCA
GGTATAAGATTCCACCTCTCTCGACACTGATGGACTGCAGTCCTGGCCTG
GCACGCTGTGGTGCGGCGCTGAGCCAGAACGGTTCACAGGATGCTCCCCC
TCTCCCCCCTCCCTTGTCCGTGTCAAAATGTATCGTGCGTAGTTGGCGGC
CGGATGACCTTAGGAAATGATGCACGGGCACCCCGTGGACGGGTACCACG
TGCCCGAGGCGCGGGAGGGGGGGCCAAGACTGTACCCTCCTTTGCTCGTC
GAGTGGGATTCATGGCCCCCCCACCCTTGGGGTTTCCGTAGTCTCGTGGA
TTTTTGCCTCCGGGGGCGTTTTAGCCTTATTGGTGGCGAGACCTACACCC
CCTCTGGTTTTGAGGATTAGGTTCCCTTTACCGTGCCGTGCCGTAACAAT
ATTTCGCTGTGAGTTCCATCAACCCTTGCTGTGTACGGCAAGCAATCAGG
TACGCGGTAGCCTGTTTATGACACATGTCGTGGCGCATGCACACGGCCCT
CGCTTG back to topCoding sequence (CDS) from alignment at H-canaliculatus_F_contig10086:118..2223- >mRNA_H-canaliculatus_F_contig10086.113.1 ID=mRNA_H-canaliculatus_F_contig10086.113.1|Name=mRNA_H-canaliculatus_F_contig10086.113.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1596bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10086:118..2223- (Hapterophycus canaliculatus Oshoro5f female)
GGCGGAGGCGGCGGAGGCGGGGGTGCTGGGGGATACAACGGTTTCCGGTT
AACAGCTCCGGTATTTGTGCCTGAACAGGGCGGAGGCGGCGGAGGCGGGG
GTGCTGGGGGATACAACGGTTTCCGGTTAACAGCTCCGGTATTTGTGCCT
GAACAGTTCACGCCTCCAGGAGCAGGCGGGGGGTCGATTCTCCCCCGCAC
GGCTCAACAGCCGCCGCCTCCGCCGACGCACCAACTGCCGTCGCCAAACC
ACCAGCAACAGCAGTCCCCGCGGCGGCAACAATCGCCGCAGCACCACCAG
CATCCACAACAGCAGCGGCAGCACCAAGGCATCGCCGCGCAAGGAGGGGT
TGCTTCGATCTCTGGAGGGGGCCACGACCGTGCGCCCCCTGCTCGTGCTC
CTGCCGACGCCGGGGGGTACGCGGCTGCGGCTCCGGCGGGTGGGGGTGGC
GGGTCAGGCCTGGAACCCGGCTGGTATGGCGGCGGCGGCGGTGCGGGCGG
ATGGGCAGGGAGCACTGGAGGCCCCGGAGGCGGGGTAGGTGGGGTGGGAG
TCGGCGCAGGAGGCAGCGGGGGTACCGTCCTATGGGACGACGACTACCGA
GCGCTGCGGGCCAGGCTGGAGGTGCCCTCGTTAGGCTTCGGATCTCTCAG
GACTCCGGGGCAAGCGGGAGGAGTAGTTCACGCCTCCAGGAGCAGGCGGG
GGGTCGATTCTCCCCCGCACGGCTCAACAGCCGCCGCCTCCGCCGACGCA
CCAACTGCCGTCGCCAAACCACCAGCAACAGCAGTCCCCGCGGCGGCAAC
AATCGCCGCAGCACCACCAGCATCCACAACAGCAGCGGCAGCACCAAGGC
ATCGCCGCGCAAGGAGGGGTTGCTTCGATCTCTGGAGGGGGCCACGACCG
TGCGCCCCCTGCTCGTGCTCCTGCCGACGCCGGGGGGTACGCGGCTGCGG
CTCCGGCGGGTGGGGGTGGCGGGTCAGGCCTGGAACCCGGCTGGTATGGC
GGCGGCGGCGGTGCGGGCGGATGGGCAGGGAGCACTGGAGGCCCCGGAGG
CGGGGTAGGTGGGGTGGGAGTCGGCGCAGGAGGCAGCGGGGGTACCGTCC
TATGGGACGACGACTACCGAGCGCTGCGGGCCAGGCTGGAGGTGCCCTCG
TTAGGCTTCGGATCTCTCAGGACTCCGGGGCAAGCGGGAGGAGTAGGCGG
GAGCTCCAAGAGAGGCGGGAGGGGAGGCGGTGGAGGCCAGGGTGGCCTCT
CGCTTCGCTCTCGGCTCTGCGAGGACCTGTCCCGCTTCCTGCACATGGTC
ACGGAGAGAGAGAGGAGGACGTTCGACGCCAAGTGGGTCGCGTACCAGCG
CTGCAGAGCGGTCGTGCGCGGACTCTGGCCGCGAGCTCAGGTATAAGCGG
GAGCTCCAAGAGAGGCGGGAGGGGAGGCGGTGGAGGCCAGGGTGGCCTCT
CGCTTCGCTCTCGGCTCTGCGAGGACCTGTCCCGCTTCCTGCACATGGTC
ACGGAGAGAGAGAGGAGGACGTTCGACGCCAAGTGGGTCGCGTACCAGCG
CTGCAGAGCGGTCGTGCGCGGACTCTGGCCGCGAGCTCAGGTATAA back to top
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