mRNA_H-canaliculatus_F_contig10083.112.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10083.112.1
Unique NamemRNA_H-canaliculatus_F_contig10083.112.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10083.112.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10083contigH-canaliculatus_F_contig10083:2448..4974 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size183
Cds size183
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928635.9770768-CDS-H-canaliculatus_F_contig10083:2447..25431622928635.9770768-CDS-H-canaliculatus_F_contig10083:2447..2543Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10083 2448..2543 -
1696845506.1161118-CDS-H-canaliculatus_F_contig10083:2447..25431696845506.1161118-CDS-H-canaliculatus_F_contig10083:2447..2543Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10083 2448..2543 -
1622928635.996911-CDS-H-canaliculatus_F_contig10083:4887..49741622928635.996911-CDS-H-canaliculatus_F_contig10083:4887..4974Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10083 4888..4974 -
1696845506.1249843-CDS-H-canaliculatus_F_contig10083:4887..49741696845506.1249843-CDS-H-canaliculatus_F_contig10083:4887..4974Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10083 4888..4974 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10083.112.1prot_H-canaliculatus_F_contig10083.112.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10083 2448..4974 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10083.112.1

>prot_H-canaliculatus_F_contig10083.112.1 ID=prot_H-canaliculatus_F_contig10083.112.1|Name=mRNA_H-canaliculatus_F_contig10083.112.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=61bp
RLLGGPARQRTAAATVTRVLQVMPTATRAAAGTSEQQRGSRRPPPAFRRG
PWSRSGPSSS*
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mRNA from alignment at H-canaliculatus_F_contig10083:2448..4974-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10083.112.1 ID=mRNA_H-canaliculatus_F_contig10083.112.1|Name=mRNA_H-canaliculatus_F_contig10083.112.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2527bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10083:2448..4974- (Hapterophycus canaliculatus Oshoro5f female)
CGTCTGCTCGGAGGACCCGCTCGGCAGCGGACGGCGGCAGCGACGGTAAC
GAGGGTGTTGCAGGTGATGCCGACGGCGACGCGGGCGGTGAGGCTGGCAC
AGGTGGCCAGTGGGGCACCTTATATTTGACCTTGCGCAACCTACCCTCCG
AAGTGTCATTATATACAAGTAATTTAACGTCCCCTGGGGGTGCACCCCAA
CCTGTTCACAACCTTGCCAGGTTATGAACCGCGGACCGCATAACCTTGGG
AGGTTGGGATTGGACGGCCGCATAACCTCGGGAGGTTGCGTGCGTCGGCC
GGCGTAACCTCGGGAGGTTGTATTCGGCGGTGATCATAACCCTCGGAGGT
TGGGTCCGACGGCCCGCGCAACCTTGCCCATTGGGCAATCTTGGTGGTAA
TCACCACCACTTTTTTGGACGAGCTCATTTATTATTCATTTCGATGTAGA
TCCATTTACTTACGCGCGATGCTCATCACCGCTGAGCTGTCACACCCACC
AGGACCCTAGAAAAAAAACAGTGACATGTTACGATTTCTTTTCGTTCGCG
CAAGAAACAAAGAGAATTTGGCCTCAAGCCAAGGACGCACAACGACTGCA
GCATGCATCAAGCCTTGAATCTATGGTGACTGACACTTTTTTTTTACGCA
AGGAAACTAACGAAAATACAAGCACCGCAATATGAGGGAGTGCTGGCAAT
CTTCCTCTTACTACCTCACATAAGACGATACGTGTAAACCGGAATGGCGA
AGACGTCTCCACTAAAAAAATAAACTTTGCAACGGGAGGCACGGGAAGTG
CCCGCTCTTCTCCCTCTTAGATTTGTCTCCCGCGTATACAAGCACCCCAC
AGAGAAAAAAGAGCAAGACGGAGGCTACAGGTGCGTGTCTCCAGGGTACG
CCGTGCAGATGAACTCGTCTTTTTGCGACGCCCCTCCTCCTTCCTCGAGT
AAACACTGCCACACAAAGAAAATAAAAGTTGAAGCCAGAGAGGGATGTCA
CGGAACCCAATTTTTCGTCTACCATAAGGAAAATATTGGCACAAGAAAAG
AACGAAACCAGCACGATAAAAGCACACGTTCCATCCAGGGAACGAGCAAC
AACTTAGCGCGGTGGATGTACTGCGCACAACCAACCACTCGAAACAAAAC
GCGCCCTCATTGCTGGCACACATTCTTGCTCTGTAGATTCGGGGAGGAGC
AAAACTGCTGCCCTACGAGGATGCCGTCGCCCCTCCTTCCGGTTCGCCAC
GTCGGAAAATGACGAAAATAAATCAGGAAAAGAGAGAAATAATACAAGCG
AAATCCATACACGTAATCTACACAGGGCGAGAGCGCCACCAGAATCTAGG
AGCCACGAATGAATCAGCAACATCGGGAAGGAATGGCACGCCACCGACGG
CTGATAGCAACCCGTGCTCGTCGCTGGCACATCCTCTTGTCCCGCGGGTT
CGGGGTGTTGAGCAACCCTCATGCTCCACAAAGATATGCTCCAAATCCCC
GCACTAAGTAACTCCGGTCCGCCAATAGAAAAGAGAAGAAGAAAGCGTAG
GCACGGGCTAAGCATCCTACTAGAAGCAAACAGCCTCCCTGACAGTTTGG
TTTTACTCGAAGGTTTCCTGCTACCACGTGCCCCGGACCCGACCCGTCGT
TGGCCCGTTTAGTTAGCAGCTACAGACGCTGAAGAAGGAGTAAGAAGCTT
CAGCGGATCATGGCGCCAATACGTCGCGACCCTGCCCTTTAACCTTCTCC
CGACGCAAGTTCGCATACAGAGCAAAGGCAGGGAAGGGGGGAATTCGTGC
CATCAGTCGGTTGTGCGATAATAAATTCAGGTGGTATATTTCAGGATGCG
GCAGAGCTCTTCCACGTGCGCCAACGTGCGAAGGCCAGTCACAGTGCATC
TACCGTAAGTTACGCTCGGAAGGACCACGCAGAAATGAATATACAGAAAG
AAAACGTTTCGGAAGCTCGAATTATTCTATCTTGAGTACGAGTAGCTTAA
TGCTCTCGATATTGTTCATGAAATGCACATGACCACGGCAACGAGAGGCA
AGCGCTCACCGCCAGAACCCGCCACACACGTATGCTCCCCGGGCAACGCT
TGTTTGACCAAGCGATGCCGCTCGCTGTAAATGACACAGAGGGCGAGCGG
GCGAGCACAAAAATCGTGGTCTCACATCAAAAGCTAGTTCTCGGTCTCCT
GTCGCTCTCTTCCTCGTGGTCGTCGTCGTCGCTGCCACTGTTGTCTTCGT
CGCCGCCGTTCTTGTCATCGTCGGAACCGGTGAAGTTCTCGTAATCCTTC
TCTTCCTCCTCGTGGTCGTCGACGTCGGTGGCAACAAACTCCACGTCACT
CTCTGCTTTCGTGCTCGTGGGCGATGTCATTGGGGTGTTCGTCCGCGTCC
TCGTTGTGTTCGTCGCCCTCGTGCTTGTAAGGCCGCAGGAACCTCAGAGC
AGCAGCGAGGTTCACGTCGGCCGCCGCCGGCATTTCGCCGAGGGCCTTGG
TCGCGAAGCGGCCCATCCTCGTCCTAA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10083:2448..4974-

>mRNA_H-canaliculatus_F_contig10083.112.1 ID=mRNA_H-canaliculatus_F_contig10083.112.1|Name=mRNA_H-canaliculatus_F_contig10083.112.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=366bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10083:2448..4974- (Hapterophycus canaliculatus Oshoro5f female)
CGTCTGCTCGGAGGACCCGCTCGGCAGCGGACGGCGGCAGCGACGGTAAC
GAGGGTGTTGCAGGTGATGCCGACGGCGACGCGGGCGCGTCTGCTCGGAG
GACCCGCTCGGCAGCGGACGGCGGCAGCGACGGTAACGAGGGTGTTGCAG
GTGATGCCGACGGCGACGCGGGCGGCCGCAGGAACCTCAGAGCAGCAGCG
AGGTTCACGTCGGCCGCCGCCGGCATTTCGCCGAGGGCCTTGGTCGCGAA
GCGGCCCATCCTCGTCCTAAGCCGCAGGAACCTCAGAGCAGCAGCGAGGT
TCACGTCGGCCGCCGCCGGCATTTCGCCGAGGGCCTTGGTCGCGAAGCGG
CCCATCCTCGTCCTAA
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