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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| Model size | 518 |
| Cds size | 399 |
| Stop | 1 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622928635.6165798-UTR-H-canaliculatus_F_contig1008:7963..8045 | 1622928635.6165798-UTR-H-canaliculatus_F_contig1008:7963..8045 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig1008 7964..8045 - |
| 1696845505.9692833-UTR-H-canaliculatus_F_contig1008:7963..8045 | 1696845505.9692833-UTR-H-canaliculatus_F_contig1008:7963..8045 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig1008 7964..8045 - |
| 1622928635.6337357-UTR-H-canaliculatus_F_contig1008:9419..9454 | 1622928635.6337357-UTR-H-canaliculatus_F_contig1008:9419..9454 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig1008 9420..9454 - |
| 1696845505.986699-UTR-H-canaliculatus_F_contig1008:9419..9454 | 1696845505.986699-UTR-H-canaliculatus_F_contig1008:9419..9454 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig1008 9420..9454 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622928635.6484354-CDS-H-canaliculatus_F_contig1008:9454..9548 | 1622928635.6484354-CDS-H-canaliculatus_F_contig1008:9454..9548 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1008 9455..9548 - |
| 1696845506.0017285-CDS-H-canaliculatus_F_contig1008:9454..9548 | 1696845506.0017285-CDS-H-canaliculatus_F_contig1008:9454..9548 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1008 9455..9548 - |
| 1622928635.6654553-CDS-H-canaliculatus_F_contig1008:10677..10756 | 1622928635.6654553-CDS-H-canaliculatus_F_contig1008:10677..10756 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1008 10678..10756 - |
| 1696845506.022417-CDS-H-canaliculatus_F_contig1008:10677..10756 | 1696845506.022417-CDS-H-canaliculatus_F_contig1008:10677..10756 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1008 10678..10756 - |
| 1622928635.6937652-CDS-H-canaliculatus_F_contig1008:11326..11552 | 1622928635.6937652-CDS-H-canaliculatus_F_contig1008:11326..11552 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1008 11327..11552 - |
| 1696845506.0380123-CDS-H-canaliculatus_F_contig1008:11326..11552 | 1696845506.0380123-CDS-H-canaliculatus_F_contig1008:11326..11552 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1008 11327..11552 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1008.109.1 >prot_H-canaliculatus_F_contig1008.109.1 ID=prot_H-canaliculatus_F_contig1008.109.1|Name=mRNA_H-canaliculatus_F_contig1008.109.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=133bp
RYDELFVSPFKPWDISAVPGSPISGPDGLLQEVADGQSGSAVTRRSTSAV
QSWEKVPEVSSAVESARCRLEFTPAGGVKKGHFNEVFLHRRGQEPRPDCP
VLVYQSGWELEGLPRRFFTASSVRWLLFDNVS* back to topmRNA from alignment at H-canaliculatus_F_contig1008:7964..11552- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-canaliculatus_F_contig1008.109.1 ID=mRNA_H-canaliculatus_F_contig1008.109.1|Name=mRNA_H-canaliculatus_F_contig1008.109.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3589bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1008:7964..11552- (Hapterophycus canaliculatus Oshoro5f female)
CGCTACGACGAACTTTTTGTTTCCCCCTTCAAGCCTTGGGACATATCTGC
TGTGCCCGGAAGTCCGATAAGCGGGCCAGACGGCCTACTGCAAGAAGTGG
CAGACGGTCAAAGCGGATCCGCCGTCACGAGGCGGTCGACCTCAGCAGTA
CAAAGCTGGGAGAAGGTGCCCGAAGTTTCCTCGGCGGTGGAAAGCGCACG
GTGCCGCTTGGAATTCACACCGGCCGGTGCGACATGGGCTAGCAGAACAG
CGGGTTGCTTGATGGCCCCATTAGGCCCGGGGGGAGCTCGGGCGAAGTGT
GACCAGTCTGTCGACTTTGGGGGGTTGTATTCTTTTGCACCAGATGTGCG
CGGGGTATGTATTACTCTGAACGCGTGACATACAGAAGCTGCTTGTCCCT
CGTTATTCTCACAACTTTCTGAGCTACGAAATGGTGCGTGATCGACACTT
CGGGAGGACCTTGGCACACTTGGGTAGAACCTGATGTTCAGGTCGACCGA
ATTCCTGCGGCCTGTCTCCACCCACGCAAACCAGTCCGGTCGACAGCCAT
ATTTGCATCTTCGTTGTGATTTATCTTGTCCTTGTTGTGCTTTTTAGGAA
CTTTCCGCAGGACGAGCCCTTGCGAAACCATGGGCAAAACTTTGGCTTTA
GAGGTACACCTTTTGTGGCGTGTACTTCTCTGGACGTACTAGTTCAACAG
GCTCTCACTCACGCCTCGAGGTATCTCGCATTACGTTTCCTCTAAAGCTT
CTCAGTTTTGCACCTTCCTCCGTCACTCGGCTATAAACGAAAGCAGGTGG
TGTAAAAAAAGGTCACTTCAATGAAGTGTTTCTTCATAGACGAGGGCAAG
AACCGAGGCCGGATTGTCCTGTTCTTTTTGTCGCTACAAATCAAGTGAGT
CGAAGAATCATGACGTTGAAGCATATCCTTTCCCAACTTCTGGAAGACAG
CGGCTGGGCTTGGCCACCTGCGCTTCTGTCAATGGCGCTGCCACTTGTTC
GTTCCTGTCCCCCTGAATACTAGCGAGACGTGTGACATGTCGTCCTAGAA
AAGAACCCGCCAAACAAACGCACAGTGAAATCAAAGAACGATAGAACGAT
GAGATGCCTGTTCTGTAGTATCGAATGGTCAGCAGTTCGTTTCAAAATCG
ATGGTAGGTCTACAGTCCGACGCGATCACCACTCGCTTTTCGGTCGTTTC
CTTCGTGACACACTCACCGTACGAGTTCATCCGCCGAACGTTGTAGAACT
CGGACAAGATGGTGAGATCAAGGAAAGGGAGGGTGACAACGATATAAGGA
AAATCTGATACAAGGTAGCATCGAGAGTAGACTAGGAGACCGCATGCCAG
CAGAAACTACGTGGGCCGCGAAAAAAATGTGGGGATATCATACCAGGTAC
AGGCATAGAGTTTGATGAGCATTAAAGACGGTGCTACATATGTATACACA
ACATGGAAGAGGAGAGGCAGGAAGAAGAGTTCGGGAGGAAAGCGTAGACC
ATGGGCCCATGGATCGCTGAAAATGATGACAATTGAGTTGAAGCAGCAAG
CCTTACGAATCCGGAATGAGTTGTTCGACTGAGGATGACGGCGATGTTGA
GATGCGCATGCGAGAACATAAGCAAATGTCCAGCAGGAGGAGATCCGGGA
AGCAAGTGGATTTGATACGGATTAGCTCGTTTCACTTCAAGTGAGGAGAA
TGCCTTCGTGGTAACCAAAGTCGTGGCGGCCAAAGAAGGGGGGGCAGAAA
CAAGTTCGAGACGTGAAACTCGACGATACAGCAGGAGCACCCGAGTGAAG
GAGTTTCTCTTGTATTGCATGGAAACACTGCTTCCACTGTTTCGACGTGA
AGCATAGACGCGAAGAGACCAACGACTAAGTGGAGCGACAAATGAATTGT
TCCCTCCGCCATCCACAAAACGTTCCACTTTTTGTTCACGAACGGAGTTT
TTGGTGGAAATCATGTCAAGCCCTGCCTACGGAAGCTTTGAGGTCGGCGG
TACCCGTATATCAGAGTGGTTGGGAGCTGGAAGGGCTTCCAAGACGCTTT
TTCACGGCCTCTTCCGTCCGGTGGCTCCTGTTCGACAACGTATCATGAAC
GAGGCTTCACGGCTTTTCCCGAAGGACGGACAGGTAAAGGCGTGTGTCAT
CTTGTTCGCACTATTCCAAAGTGGCTCTATGTAGGTATACCTTAAACGCG
CCGAAATCCTTACCGCTCCCTTGGCGAAGAGACCGCACTCGCTTTTTTCA
GCCCCCGAAATACCAAATACTCCGGAGTATGCAGAATCAAAACACGTATG
TATCCCCCTATTCAAAAGTGAACTAAACTGAACTGCAAGTCAACGACTGA
CATGTGGCGTGACATGAACACTCAAGGTAAACAGGGCCCAAAAAGGTCGT
CATGGGAAGATATGAGCCTGGCGAACACAGCAGCAGCAACCACAAAGTGT
TTCGTGAGCATGAGAACAGCTGCTGAATCTCAACTCTACCCCGTGTCTTC
ACCCCCACCCACGGCGCAACCCCTTCGATGTGCAACGTTCAGATACCTAC
TCTTGCTTACCCTGCTTTTCTGTGCATTTCTAACGTTGCCCACCGTGTGG
CTATCTTTCCGGCGGCGGAAAAATTGGGTCTGATACACGACTCTTCAAGA
TTTGGGGCCTCGTATGGGTTCCCCACACTTTTCGACATAATCTTTTACTT
CCATGGAAGTCGCATTTCGCTTCCACACGAGCTTCCCTAAACTCGTGTTG
CTTCCACGGAAGTCGTACTGGCTTCCATGGGATTGTGCGGAAGTCGTGAA
AATCTCAAAGAAGAAGCGAAAATGGCATGTGCGGACACGAGCTTCTACAA
ACTTTCAGGTGGCTTCCATTGGAACTGATGGCCTTTGATCTATCTGTGGA
AGTAAGTAAGAGTCGTGACGCCTAACATGAAAGTTGCCAAAATAGCTTTT
TCCCGCGAACTCCCGTTGTTGATGGAAGCTGTAGCTATCACGGAAGTTAT
TTTGGGATGATGTCGTCCGGTAGATATAAATGCGTTCCTCCGTGGAAGCC
CATCAACTTCCATGGAACTTACTTAAGCGGAGGCGTGTCTTTCTCACCCT
CATCCTAACCATGACCATAGGAGCTACGCCGCCGTGAATTGAAGAAGGTT
CTTGGTAGCTGTGAAGTTTGGGGTATACTTACATATCTCCAGGGAGTTGC
GTACACGACTTCCTCCTCCTCCTTGAAAATTGTAGATCATGTAATCGTAC
TTCCTTGGAAAAAGAATACAAGGTTACTTGCAAAAAGCAACACGACCAAT
GGAAGCCATGTTAGCTTTCGTGGCAGCTGCAAAACTAGCTTCCATAGAAG
CGAAGAACGTCGGCTTTCATGGACGTCCGAAACTACTTCCATGGAAGTCA
CGGATGTGCAAAGCCATCCCGCTCGCTCTTCTTGTTGTTCAAGATTGCTG
TGTTATCTGTCTGTTCAGCAACATCTCATATTTCCCCGAAACCCTGAACT
GGCACAGACTATGGCTGCGCATGCTCGCTCCTTCTTTCTGGGGTCTATAC
CGAGGAACAACAAGTTTGTGGGATGCTTGCAACAGCTGG back to topCoding sequence (CDS) from alignment at H-canaliculatus_F_contig1008:7964..11552- >mRNA_H-canaliculatus_F_contig1008.109.1 ID=mRNA_H-canaliculatus_F_contig1008.109.1|Name=mRNA_H-canaliculatus_F_contig1008.109.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=798bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1008:7964..11552- (Hapterophycus canaliculatus Oshoro5f female)
CGCTACGACGAACTTTTTGTTTCCCCCTTCAAGCCTTGGGACATATCTGC
TGTGCCCGGAAGTCCGATAAGCGGGCCAGACGGCCTACTGCAAGAAGTGG
CAGACGGTCAAAGCGGATCCGCCGTCACGAGGCGGTCGACCTCAGCAGTA
CAAAGCTGGGAGAAGGTGCCCGAAGTTTCCTCGGCGGTGGAAAGCGCACG
GTGCCGCTTGGAATTCACACCGGCCGCGCTACGACGAACTTTTTGTTTCC
CCCTTCAAGCCTTGGGACATATCTGCTGTGCCCGGAAGTCCGATAAGCGG
GCCAGACGGCCTACTGCAAGAAGTGGCAGACGGTCAAAGCGGATCCGCCG
TCACGAGGCGGTCGACCTCAGCAGTACAAAGCTGGGAGAAGGTGCCCGAA
GTTTCCTCGGCGGTGGAAAGCGCACGGTGCCGCTTGGAATTCACACCGGC
CGGTGGTGTAAAAAAAGGTCACTTCAATGAAGTGTTTCTTCATAGACGAG
GGCAAGAACCGAGGCCGGATTGTCCTGTTCTGTGGTGTAAAAAAAGGTCA
CTTCAATGAAGTGTTTCTTCATAGACGAGGGCAAGAACCGAGGCCGGATT
GTCCTGTTCTCGTATATCAGAGTGGTTGGGAGCTGGAAGGGCTTCCAAGA
CGCTTTTTCACGGCCTCTTCCGTCCGGTGGCTCCTGTTCGACAACGTATC
ATGACGTATATCAGAGTGGTTGGGAGCTGGAAGGGCTTCCAAGACGCTTT
TTCACGGCCTCTTCCGTCCGGTGGCTCCTGTTCGACAACGTATCATGA back to top
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