mRNA_H-canaliculatus_F_contig1008.108.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1008.108.1
Unique NamemRNA_H-canaliculatus_F_contig1008.108.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1008.108.1 vs. uniprot
Match: A0A6H5KYM5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYM5_9PHAE)

HSP 1 Score: 137 bits (345), Expect = 5.200e-39
Identity = 63/84 (75.00%), Postives = 71/84 (84.52%), Query Frame = 1 
Query:  127 MMLVGMADIVVTSPRSSFSALASASGGESTQRFGGISCNPLVNDPEFHSLECAKNEWRVDQVGNPKQWDAVYHLVDSNAKRCKG 378
            MMLVG ADI VTSPRSS+SALA+A GG STQR+GGISC   VN+PEFH LECAKNEW+VDQV NP +WD +YHLV+SN  RCKG
Sbjct:    1 MMLVGNADIAVTSPRSSYSALAAARGGSSTQRYGGISCTEQVNEPEFHCLECAKNEWKVDQVKNPTEWDNIYHLVESNRARCKG 84
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1008.108.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KYM5_9PHAE5.200e-3975.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1008contigH-canaliculatus_F_contig1008:3145..5525 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size559
Cds size297
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1008.108.1prot_H-canaliculatus_F_contig1008.108.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1008 3323..5441 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928635.4150863-UTR-H-canaliculatus_F_contig1008:3144..33221622928635.4150863-UTR-H-canaliculatus_F_contig1008:3144..3322Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1008 3145..3322 -
1696845505.8967056-UTR-H-canaliculatus_F_contig1008:3144..33221696845505.8967056-UTR-H-canaliculatus_F_contig1008:3144..3322Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1008 3145..3322 -
1622928635.5563955-UTR-H-canaliculatus_F_contig1008:5441..55251622928635.5563955-UTR-H-canaliculatus_F_contig1008:5441..5525Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1008 5442..5525 -
1696845505.9419754-UTR-H-canaliculatus_F_contig1008:5441..55251696845505.9419754-UTR-H-canaliculatus_F_contig1008:5441..5525Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1008 5442..5525 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928635.433992-CDS-H-canaliculatus_F_contig1008:3322..34771622928635.433992-CDS-H-canaliculatus_F_contig1008:3322..3477Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1008 3323..3477 -
1696845505.9050503-CDS-H-canaliculatus_F_contig1008:3322..34771696845505.9050503-CDS-H-canaliculatus_F_contig1008:3322..3477Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1008 3323..3477 -
1622928635.4690378-CDS-H-canaliculatus_F_contig1008:4760..48751622928635.4690378-CDS-H-canaliculatus_F_contig1008:4760..4875Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1008 4761..4875 -
1696845505.919679-CDS-H-canaliculatus_F_contig1008:4760..48751696845505.919679-CDS-H-canaliculatus_F_contig1008:4760..4875Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1008 4761..4875 -
1622928635.5426705-CDS-H-canaliculatus_F_contig1008:5414..54411622928635.5426705-CDS-H-canaliculatus_F_contig1008:5414..5441Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1008 5415..5441 -
1696845505.931464-CDS-H-canaliculatus_F_contig1008:5414..54411696845505.931464-CDS-H-canaliculatus_F_contig1008:5414..5441Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1008 5415..5441 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1008.108.1

>prot_H-canaliculatus_F_contig1008.108.1 ID=prot_H-canaliculatus_F_contig1008.108.1|Name=mRNA_H-canaliculatus_F_contig1008.108.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=99bp
MRNTLEKIKSALTEMMLVGMADIVVTSPRSSFSALASASGGESTQRFGGI
SCNPLVNDPEFHSLECAKNEWRVDQVGNPKQWDAVYHLVDSNAKRCKG*
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mRNA from alignment at H-canaliculatus_F_contig1008:3145..5525-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1008.108.1 ID=mRNA_H-canaliculatus_F_contig1008.108.1|Name=mRNA_H-canaliculatus_F_contig1008.108.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2381bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1008:3145..5525- (Hapterophycus canaliculatus Oshoro5f female)
CAGTTCGCAGCATCAAAATTGAAGCCGCGCGGCATCAATGTGGTAATCCT
GGAGGGCGTACAGCGTTTAGGGGAAGGGGGGAAGATGCGCAACACGCTGG
AGAAGATAAAAGTGAGCGTCTGCAACCACCGTGCAATGCTACACTCGTAT
CTGCTTTCAAAACCACTTATCTAGGTTCACTCGGCTCGAGAGGCATCAAA
CAATCAGATCTGAATCAGGGTTGAACATTTCTGAAACGACGAGTAGGGAT
TGTTTCATGGTTAGGTGGTCGATTCCCCCGTCGAAGAAAGAGAAAAACAG
ACGTGCAAAAACTTTGGCTTGTAGAAACTACGCAGCAGAAAATGAGTAAC
CGACGCCGGCGCCACTACCAAAAGTGACTATTTAACAGCCTGACCAGACC
ATTCCACGAGGGCCGGCGGTCTGTCTTTACAATCAATGTCTAGGCCTCCG
AAGAGCCAACACGACGATAGGGCCCAACGAAATTCATGTGATTTTCCTCA
AGTTGTCGTGTAGAAGACACTGGGCCGAGCTGGCGAACGCAACCACCCTT
GCTGAAAGGGTAAGCCGCATGAGTTCCGGAATCGATAGTTTCCACCTTCA
TTTACAATACTTTTGTCCGGTGGCATCCTTGCCTTCATGTCTCCTTTCAG
TCGGCTTTGACGGAAATGATGCTGGTCGGAATGGCCGACATCGTGGTGAC
TTCTCCCCGGTCGTCGTTCTCGGCGCTCGCTTCCGCAAGCGGAGGAGAGT
CTACACAAAGATTCGGTGAGAACTTCGCCTGGAAACCTGCGAAAGGCATG
TCTACTTCGAACACACGTTCGGACGGACTCAACGGGGGAAACAATCGGGT
GATCCACTGACGCAGCAACGTCAGGCGTACGGCGTACAGGAATTGGCGGG
TGTATCTGCCCGTGGTTGGATGCACATACAAAGTCGTTGTTTCCACCGAT
ATCCAAAAGGCGCACAGGCCTCTCTCCGCCCAAACGAAAGCGGCACAGCC
TTCTTCGTGTGGTAAGAACGTCAACCTCATTGAACCAAAGGCACTCCAGA
AATCTGTCAGAGAGTTTTCCAGAAAGAGATTGTACACTGTGGTCCGTGCG
TAGAGAGAAATAACCAACAAGTATGCACGAACGTTTACACGCATCACGCA
GAAATGATTTTGATAATGCCGTCTGAAGCAAGAGCTGAAAATGGCAGAAA
CGGAAGAACGTGTTGGACGTAAGGAAAAGTGCCGTCAGCAAATGAAAGGC
ACAGGGTGGGGGCTTCAGACCGAAATGTGTAGGTCAGGATGAATGGTTGT
AATTTTTCGCACTTGTGGTTTGACGCTTGATTTCTATTGGTTCATGTGTA
TTATGGTCGGCACCCCAAGCTCAGCTTTCATTGGCGAGGTATGTTTTGCC
GATGCTCTACAGATAGATGTCTGTGCGGCGAAAAACGGAGGCTGTCATAT
ACATAGAAGACCAGCTGATCGGGCCAAGGTCCGGCGTGTTTGTGTTTGTG
ACTGTGTCCAACCGTTTGGTCACCCAGACAAGGGCACTGGAGGGTGCTTG
CGCGAAGAAAAGTGATGTTGCTTGGGTGCATCCCACCGCCACAGCTTGAT
CTCAGGGATTGTGCGCAAATGAGTAGGAATAACGGAGCCAAACGGTGTCA
TGTATTTTAACTTCGCAAGCCTCCCCTTGTCAGCCGAGGGGTTGGCGATG
AGGGCTTGCACAACACCAGTGAGCTTGACAGCGCTCGTTTGGAGAAAAAA
GGGAAAATAACCTTCGGCTCTATCACCTGCAGAAATCCCGCAAAACCCAA
CCAAGAAACAATCTTACACGAATGTGTAGTTTTACCCTAGCATCGCTCGT
TGGTCGAGGCACAGAGACAAAATCGTGCCCTGCTGTGATGAAGCCGCCCG
ACCGCCTCTGCGCCATCCCCCACAGTGTTCAAGCAATCGTGCGGAACGCT
CAAATTGACACATAAGACGATCGTACACGACACGACTCGCCCGTTTCATA
AGTGCCCTCCGCCAACCGTGCGTCGTTGAACTTTGTGATGGCCTGCAGGA
GGCATCTCGTGTAACCCGCTGGTTAACGACCCTGAGTTCCACTCCCTTGA
ATGTGCCAAGAACGAGTGGCGTGTGGACCAAGTTGGTAACCCGAAACAAT
GGGATGCTGTCTACCACTTGGTCGATAGTAACGCAAAACGATGCAAGGGG
TAGGCTTCCGGGGGATAAGCCCGTCTTCGTTGCTGACCCAGGGTTGCTCG
CGCACGGTAGTGTGGCTTGTCATTTTCGAAGAAAGGGGGGACTTCGGCTT
GTGGACTTTAATACTGCGACGAAGCAGTGTTTTCTCATTTGCAATCAACC
TTCCTGTGGAGACAATTATGGAAATAATGAC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1008:3145..5525-

>mRNA_H-canaliculatus_F_contig1008.108.1 ID=mRNA_H-canaliculatus_F_contig1008.108.1|Name=mRNA_H-canaliculatus_F_contig1008.108.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=594bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1008:3145..5525- (Hapterophycus canaliculatus Oshoro5f female)
ATGCGCAACACGCTGGAGAAGATAAAAATGCGCAACACGCTGGAGAAGAT
AAAATCGGCTTTGACGGAAATGATGCTGGTCGGAATGGCCGACATCGTGG
TGACTTCTCCCCGGTCGTCGTTCTCGGCGCTCGCTTCCGCAAGCGGAGGA
GAGTCTACACAAAGATTCGTCGGCTTTGACGGAAATGATGCTGGTCGGAA
TGGCCGACATCGTGGTGACTTCTCCCCGGTCGTCGTTCTCGGCGCTCGCT
TCCGCAAGCGGAGGAGAGTCTACACAAAGATTCGGAGGCATCTCGTGTAA
CCCGCTGGTTAACGACCCTGAGTTCCACTCCCTTGAATGTGCCAAGAACG
AGTGGCGTGTGGACCAAGTTGGTAACCCGAAACAATGGGATGCTGTCTAC
CACTTGGTCGATAGTAACGCAAAACGATGCAAGGGGTAGGAGGCATCTCG
TGTAACCCGCTGGTTAACGACCCTGAGTTCCACTCCCTTGAATGTGCCAA
GAACGAGTGGCGTGTGGACCAAGTTGGTAACCCGAAACAATGGGATGCTG
TCTACCACTTGGTCGATAGTAACGCAAAACGATGCAAGGGGTAG
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