mRNA_H-canaliculatus_F_contig10074.106.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10074.106.1
Unique NamemRNA_H-canaliculatus_F_contig10074.106.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10074.106.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10074contigH-canaliculatus_F_contig10074:1754..4510 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons5
Model size509
Cds size507
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10074.106.1prot_H-canaliculatus_F_contig10074.106.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10074 1754..4508 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928635.1136296-CDS-H-canaliculatus_F_contig10074:1753..18401622928635.1136296-CDS-H-canaliculatus_F_contig10074:1753..1840Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10074 1754..1840 -
1696845505.799501-CDS-H-canaliculatus_F_contig10074:1753..18401696845505.799501-CDS-H-canaliculatus_F_contig10074:1753..1840Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10074 1754..1840 -
1622928635.1306868-CDS-H-canaliculatus_F_contig10074:2918..30091622928635.1306868-CDS-H-canaliculatus_F_contig10074:2918..3009Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10074 2919..3009 -
1696845505.80803-CDS-H-canaliculatus_F_contig10074:2918..30091696845505.80803-CDS-H-canaliculatus_F_contig10074:2918..3009Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10074 2919..3009 -
1622928635.1469617-CDS-H-canaliculatus_F_contig10074:3261..33491622928635.1469617-CDS-H-canaliculatus_F_contig10074:3261..3349Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10074 3262..3349 -
1696845505.8226366-CDS-H-canaliculatus_F_contig10074:3261..33491696845505.8226366-CDS-H-canaliculatus_F_contig10074:3261..3349Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10074 3262..3349 -
1622928635.1648502-CDS-H-canaliculatus_F_contig10074:4053..42211622928635.1648502-CDS-H-canaliculatus_F_contig10074:4053..4221Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10074 4054..4221 -
1696845505.8355136-CDS-H-canaliculatus_F_contig10074:4053..42211696845505.8355136-CDS-H-canaliculatus_F_contig10074:4053..4221Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10074 4054..4221 -
1622928635.185797-CDS-H-canaliculatus_F_contig10074:4435..45081622928635.185797-CDS-H-canaliculatus_F_contig10074:4435..4508Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10074 4436..4508 -
1696845505.8450902-CDS-H-canaliculatus_F_contig10074:4435..45081696845505.8450902-CDS-H-canaliculatus_F_contig10074:4435..4508Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10074 4436..4508 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928635.201678-UTR-H-canaliculatus_F_contig10074:4508..45101622928635.201678-UTR-H-canaliculatus_F_contig10074:4508..4510Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10074 4509..4510 -
1696845505.8555026-UTR-H-canaliculatus_F_contig10074:4508..45101696845505.8555026-UTR-H-canaliculatus_F_contig10074:4508..4510Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10074 4509..4510 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10074.106.1

>prot_H-canaliculatus_F_contig10074.106.1 ID=prot_H-canaliculatus_F_contig10074.106.1|Name=mRNA_H-canaliculatus_F_contig10074.106.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=169bp
MLQQTRAPESACSLWSVLLLIGGYDVGEARHTRLPALFTTCAPFLLGWVG
ALGSSGDPSGADRRWSHYFARSISCGKSVAGAPADTRHGERPCPLVRCCC
WSDSWICRRRWFTRLDDFWIRLLPIGGGETRSQCQWEAKWHSWILLDPSV
DQHRGFPSRAGDLCVQSR*
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mRNA from alignment at H-canaliculatus_F_contig10074:1754..4510-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10074.106.1 ID=mRNA_H-canaliculatus_F_contig10074.106.1|Name=mRNA_H-canaliculatus_F_contig10074.106.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2757bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10074:1754..4510- (Hapterophycus canaliculatus Oshoro5f female)
AGATGCTTCAGCAGACGCGCGCCCCGGAGAGCGCCTGTAGTCTCTGGTCG
GTTCTGCTGTTGATTGGAGGATACGGTGAGAGCCCTTATTGTCAGGGACC
GTGTGTCTCGTTGAAGAGCATAGAAAGTACAAGAAGATCAGTCATGCGCG
TGTAGACTCCAGCGCCACGGTTCTCAATCGTGCACTTGCCGGAGTTTTAC
GATCTGCTTTTTGTACGCTGATGAGAGAAAGTTTGTGTGTGGGGCTGATT
TTCCAACCTTTTCTTGCCCTTTTCCGGCCATCTCCGCAGATGTTGGAGAA
GCACGCCACACGCGACTGCCCGCACTCTTCACGACGTGTGCCCCTTTTTT
ATTAGGCTGGGTTGGCGCGCTTGGATCCTCCGGGGATCCATCTGGTGCCG
ATCGGCGGTGGTCGCACTATTTCGCCCGGAGCATCTCGTGCGGTAAAAGC
GTAGCAGGTGAGATTCGGGTTGCGTGGTTTCACCTGTGGCACGATACGCG
CCTGTCTGTATTACCATTGGACTTACCGTGACCTCGAAAAGCTCTCTGCC
GCTTTGCTGTGAGGGGAACCTAACCAGCTTGGGAAGATAATTGTTTCTGC
TCCCATTGTACTATCGGCAGTACCAGTTTGTGTTCTCGACCTTTTCACGC
GTTCTTTCAAGAACCAGCAATACTGATTCTGGATGGGAAAACCTGTGCGC
ACAACCACTGTGAAAATGCCTTCGAGCGTCTTGGTGTGGTAGCCAAGGCT
TTGTCGCTTCACCACCCAGCTTTTGTAGATTACAAATGCGTGTAAAGAAC
TCGTCGTGAAAGCAGTCACGTTTTGTAAAGTTGTGCTCTGTGAGTACTCT
CCGTTTGCCATTGTGACACAACCATTCCAAGTGCTTGTTCTACCCGCCGA
ACTTACATTTCGGAGATTGAGGGTAGGCGAGAGAGAACAACCACGTGCAC
GAAATCACGTGTGGAGTAGTATGGACATGAGAGAAGCGTACTCTTCGAGC
CCGTTTTGCGTGCTCCACCCTCTTCGGATCTTGCCTCAGCCTGTTTTTGG
CTCCTACTTCCTGCGCCATCGCTCATTGAATGTGAATCATGTCCATAAAT
ATATTTCCCGCCCTTTCATCACGGACCTGTATCTCTCGTTTGTTTACTTG
TCTCCCTTCAGGTGCCCCAGCAGACACGCGCCATGGAGAGCGCCCGTGCC
CTCTCGTTCGTTGTTGCTGCTGGTCGGACAGCTGGATCTGCCGAAGACGG
TGAGGGCCCTTCTTGTCTTCTTGTCGTTGAGGAGCAGAGGACTAAGAAGG
CCAACGACGCCCACGGTGTCCTGGTTCTTCATCACGCCTGTCGCGGGGTT
TAACGGACTATTCGTGTGCCGTTTTCGGCGCTGCTGTTTCAGGCAGATGC
CCACCCATGCCCCGTTTCTCCACACTCTCTCGCACACAGGTACTCCAAAA
GCACGCCACGCGTCAATACCTACACCCATTACCTGTCCCTCTTCTGCGCA
GGTGGTTCACGCGCTTGGATGATTTCTGGATTCGCCTGCTGCCGATCGGC
GGAGGGGAAACGAGGAGCCAGTGTCAGTGGGAAGCAAAGTGGGTGAGAGT
CGGCAGGCGCAAGCGGTGGCACGGGCACGCGCCTATCAAACCACGGGACA
GTTGTTGGCCTCGGCGGAAAGCTTGCTGTCCCTTCGTTGAGTTGGGGCAC
CTGAATTCCTCCTCAAACAATATTTCGTCCACCTCTGCGTTGACCCGCAG
GAAAACACCACGCCTCCGTCTGGTTGTAGCTAGCTCACTTGTGAGCAGGC
AGGTGTCTGAACCAACTTGTTGTTTTCTTCCGTAGCTCATTTTACGTGAG
GTTTTGCAAAGTCATTGTCGGTGAGCTCTTCCTTACTACCAAAACCTTAT
ACATTCCGGGCGATTGGCCGTTTTCTGACACAGCTACTGTATGGATGTCC
GGGTGTTGAATTGTCGTAGCTCCTATTATCACAATGCTTTCCCGATCTGC
CACTTCTTTCCTTCGCCTGTGCCCTCTCAACTCTTCCTCACCGACACGAG
ACAATATGAGACGAACAGAGGCACGCGGATTTCCTGCTGAGCGGTGACAA
CTGGTGAGCAAGTGCTTTGCGGTGTGTCTAGTGTGCTTTTTTCAAGAGGA
CAGAGAGAGAGAGGTAACATGCAGGAGATATGTGTACAGTAATCAACCAG
AGGGAGTAGAGTAGGAGAAGAGGAGGCGTACTGTATTCCTCGATCCTATC
GCCGTCGTACACGGGCGTGCTACACCGTCTTGCCATTCAAAGTTTGAAAC
AAAACCCGCTCACTTTTGGCCACCTCGAAATCTCTCGTAGGCACGGTTCA
CCGAGATACGCTCAAAATCATTTTAAGAGTGTAGACAATCTCGTTCTGCC
CTAACACAAGTCGCGCGGGCGTCCCTTTTCCCTTGTATCTCACCTCGTCC
CACCCCTTTCACACCTACCCGAAACAAAGCTTCCTTTCGTCCCACAACGT
CCGTCAAGTTTCGCACAAGATTCAACAAAGTGGCCAGCTGTAGCGTATCC
GCGCCCTTTCGCCCCACACTCTCCCCGCGCCCTTTCACTTGTGCTCTCCC
ATCACAGGCCAGTGATATTATGCGCCCTGCGCGCTCTTCCCCCGTGCCCT
TTGTCGGCACTGCTGTGTAGCACTCTTGGATTTTGCTGGACCCATCTGTT
GATCAGCACAGAGGCTTTCCTTCACGGGCAGGAGACCTTTGTGTCCAAAG
TAGGTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10074:1754..4510-

>mRNA_H-canaliculatus_F_contig10074.106.1 ID=mRNA_H-canaliculatus_F_contig10074.106.1|Name=mRNA_H-canaliculatus_F_contig10074.106.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1014bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10074:1754..4510- (Hapterophycus canaliculatus Oshoro5f female)
ATGCTTCAGCAGACGCGCGCCCCGGAGAGCGCCTGTAGTCTCTGGTCGGT
TCTGCTGTTGATTGGAGGATACGATGCTTCAGCAGACGCGCGCCCCGGAG
AGCGCCTGTAGTCTCTGGTCGGTTCTGCTGTTGATTGGAGGATACGATGT
TGGAGAAGCACGCCACACGCGACTGCCCGCACTCTTCACGACGTGTGCCC
CTTTTTTATTAGGCTGGGTTGGCGCGCTTGGATCCTCCGGGGATCCATCT
GGTGCCGATCGGCGGTGGTCGCACTATTTCGCCCGGAGCATCTCGTGCGG
TAAAAGCGTAGCAGATGTTGGAGAAGCACGCCACACGCGACTGCCCGCAC
TCTTCACGACGTGTGCCCCTTTTTTATTAGGCTGGGTTGGCGCGCTTGGA
TCCTCCGGGGATCCATCTGGTGCCGATCGGCGGTGGTCGCACTATTTCGC
CCGGAGCATCTCGTGCGGTAAAAGCGTAGCAGGTGCCCCAGCAGACACGC
GCCATGGAGAGCGCCCGTGCCCTCTCGTTCGTTGTTGCTGCTGGTCGGAC
AGCTGGATCTGCCGAAGACGGTGCCCCAGCAGACACGCGCCATGGAGAGC
GCCCGTGCCCTCTCGTTCGTTGTTGCTGCTGGTCGGACAGCTGGATCTGC
CGAAGACGGTGGTTCACGCGCTTGGATGATTTCTGGATTCGCCTGCTGCC
GATCGGCGGAGGGGAAACGAGGAGCCAGTGTCAGTGGGAAGCAAAGTGGG
TGGTTCACGCGCTTGGATGATTTCTGGATTCGCCTGCTGCCGATCGGCGG
AGGGGAAACGAGGAGCCAGTGTCAGTGGGAAGCAAAGTGGCACTCTTGGA
TTTTGCTGGACCCATCTGTTGATCAGCACAGAGGCTTTCCTTCACGGGCA
GGAGACCTTTGTGTCCAAAGTAGGTGACACTCTTGGATTTTGCTGGACCC
ATCTGTTGATCAGCACAGAGGCTTTCCTTCACGGGCAGGAGACCTTTGTG
TCCAAAGTAGGTGA
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