mRNA_H-canaliculatus_F_contig10073.105.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10073.105.1
Unique NamemRNA_H-canaliculatus_F_contig10073.105.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10073.105.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10073contigH-canaliculatus_F_contig10073:3206..3622 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size176
Cds size174
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928634.9510896-CDS-H-canaliculatus_F_contig10073:3205..32931622928634.9510896-CDS-H-canaliculatus_F_contig10073:3205..3293Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10073 3206..3293 +
1696845505.7484908-CDS-H-canaliculatus_F_contig10073:3205..32931696845505.7484908-CDS-H-canaliculatus_F_contig10073:3205..3293Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10073 3206..3293 +
1622928634.9646592-CDS-H-canaliculatus_F_contig10073:3534..36201622928634.9646592-CDS-H-canaliculatus_F_contig10073:3534..3620Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10073 3535..3620 +
1696845505.7573993-CDS-H-canaliculatus_F_contig10073:3534..36201696845505.7573993-CDS-H-canaliculatus_F_contig10073:3534..3620Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10073 3535..3620 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10073.105.1prot_H-canaliculatus_F_contig10073.105.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10073 3206..3620 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10073.105.1

>prot_H-canaliculatus_F_contig10073.105.1 ID=prot_H-canaliculatus_F_contig10073.105.1|Name=mRNA_H-canaliculatus_F_contig10073.105.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=58bp
RCFGSQLRQRLEAAPAPAAPRAEEVQRLLSSISPTREGKGAFGCHGGRAK
SLRLLFAG
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mRNA from alignment at H-canaliculatus_F_contig10073:3206..3622+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10073.105.1 ID=mRNA_H-canaliculatus_F_contig10073.105.1|Name=mRNA_H-canaliculatus_F_contig10073.105.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=417bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10073:3206..3622+ (Hapterophycus canaliculatus Oshoro5f female)
CGATGTTTCGGTTCACAGCTCCGCCAACGTCTGGAAGCAGCCCCTGCCCC
GGCTGCACCTAGGGCTGAAGAAGTCCAACGACTACTTTGTACGCGTACAA
GTATTCCAACCTTGTGTATCGTTCCGTCTTGTTTGTCTGCTGCTGTACTC
GCTTGTCTCCACGCAAAACGAAAAAAAAAACCACGGAGATCACACGCCCA
CCTCGACGGTGTTGTAGAAGCCCTTGAGGCCCGCTGTAAACACTCCGCGT
AGGGAGCGATAGGTGGTCGTGACGGGGCTGCCCGCCCTCTCCTCGGCGCC
CATCCTTGAAACGGCTTTGACGCGAACAGCAAGCATTTCACCCACACGAG
AGGGAAAAGGGGCCTTCGGATGTCATGGTGGTCGGGCGAAATCTCTGCGG
CTGCTGTTTGCTGGCGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10073:3206..3622+

>mRNA_H-canaliculatus_F_contig10073.105.1 ID=mRNA_H-canaliculatus_F_contig10073.105.1|Name=mRNA_H-canaliculatus_F_contig10073.105.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=348bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10073:3206..3622+ (Hapterophycus canaliculatus Oshoro5f female)
CGATGTTTCGGTTCACAGCTCCGCCAACGTCTGGAAGCAGCCCCTGCCCC
GGCTGCACCTAGGGCTGAAGAAGTCCAACGACTACTTTCGATGTTTCGGT
TCACAGCTCCGCCAACGTCTGGAAGCAGCCCCTGCCCCGGCTGCACCTAG
GGCTGAAGAAGTCCAACGACTACTTTCAAGCATTTCACCCACACGAGAGG
GAAAAGGGGCCTTCGGATGTCATGGTGGTCGGGCGAAATCTCTGCGGCTG
CTGTTTGCTGGCCAAGCATTTCACCCACACGAGAGGGAAAAGGGGCCTTC
GGATGTCATGGTGGTCGGGCGAAATCTCTGCGGCTGCTGTTTGCTGGC
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