mRNA_H-canaliculatus_F_contig10073.104.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10073.104.1
Unique NamemRNA_H-canaliculatus_F_contig10073.104.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig10073.104.1 vs. uniprot
Match: D8LQV5_ECTSI (Acyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQV5_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 2.190e-10
Identity = 31/35 (88.57%), Postives = 31/35 (88.57%), Query Frame = 1 
Query:    1 MGAEERAGSPVTTTYRSLRGVFTAGLKGFYNTVEV 105
            M AE R GSPVT TYRSLRGVFTAGLKGFYNTVEV
Sbjct:    1 MAAERRRGSPVTYTYRSLRGVFTAGLKGFYNTVEV 35
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10073.104.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQV5_ECTSI2.190e-1088.57Acyltransferase n=1 Tax=Ectocarpus siliculosus Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10073contigH-canaliculatus_F_contig10073:2553..3508 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.5
Seed ortholog evalue3.9e-08
Seed eggNOG ortholog2880.D8LQV5
KEGG rclassRC00004,RC00039,RC00041
KEGG koko:K13507
KEGG ReactionR00851,R09380
KEGG Pathwayko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110
KEGG ModuleM00089
EggNOG free text desc.Phosphate acyltransferases
EggNOG OGs28NCQ@1,2QUY6@2759
EC2.3.1.15,2.3.1.42
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01004
Hectar predicted targeting categoryother localisation
Exons2
Model size186
Cds size186
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928635.038552-CDS-H-canaliculatus_F_contig10073:2552..26361622928635.038552-CDS-H-canaliculatus_F_contig10073:2552..2636Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10073 2553..2636 -
1696845505.7809575-CDS-H-canaliculatus_F_contig10073:2552..26361696845505.7809575-CDS-H-canaliculatus_F_contig10073:2552..2636Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10073 2553..2636 -
1622928635.0534873-CDS-H-canaliculatus_F_contig10073:3406..35081622928635.0534873-CDS-H-canaliculatus_F_contig10073:3406..3508Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10073 3407..3508 -
1696845505.7911046-CDS-H-canaliculatus_F_contig10073:3406..35081696845505.7911046-CDS-H-canaliculatus_F_contig10073:3406..3508Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10073 3407..3508 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10073.104.1prot_H-canaliculatus_F_contig10073.104.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10073 2553..3508 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10073.104.1

>prot_H-canaliculatus_F_contig10073.104.1 ID=prot_H-canaliculatus_F_contig10073.104.1|Name=mRNA_H-canaliculatus_F_contig10073.104.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=62bp
MGAEERAGSPVTTTYRSLRGVFTAGLKGFYNTVEVTCKDSKEEAPTTLTE
PRGLMTPRQLKP
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mRNA from alignment at H-canaliculatus_F_contig10073:2553..3508-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10073.104.1 ID=mRNA_H-canaliculatus_F_contig10073.104.1|Name=mRNA_H-canaliculatus_F_contig10073.104.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=956bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10073:2553..3508- (Hapterophycus canaliculatus Oshoro5f female)
ATGGGCGCCGAGGAGAGGGCGGGCAGCCCCGTCACGACCACCTATCGCTC
CCTACGCGGAGTGTTTACAGCGGGCCTCAAGGGCTTCTACAACACCGTCG
AGGTGGGCGTGTGATCTCCGTGGTTTTTTTTTTCGTTTTGCGTGGAGACA
AGCGAGTACAGCAGCAGACAAACAAGACGGAACGATACACAAGGTTGGAA
TACTTGTACGCGTACAAAGTAGTCGTTGGACTTCTTCAGCCCTAGGTGCA
GCCGGGGCAGGGGCTGCTTCCAGACGTTGGCGGAGCTGTGAACCGAAACA
TCGGCGCGCAGCAGCAACCGGCGCGGGAGCGCTTTGGGGTCCAGACACGC
CTGGAATAATTCGCGCGCTCCTTGTCCGTGCGTGTGTGTTTTTTGGTTTT
GTCAGACACTACAAGTTTGGACGACCGTGCCGGCAATGTCTTCATCGGTA
CACTAACGTATGTCTTTTGTTCCATGAATCTGCACGCAAAGAATATTCAG
GTCGAAGCATGTGTGTTACTATACGATCTCGGGTTTATTCCGGGTTGAAG
GTCTGGAAAACGAGGTCATGTAGAGCACACGAGCACACCCCTATCACCCC
ATGCACCTGAGAGCAGACGGCACTTTTCGCTCTCGTTCCGATGTCAAAAC
GAGTAGTCTACAGCAGTCGAGCAACGCTGGAGTGCTGACCGCTCCGCATT
TTCCTACCCTCAATGAAGTTCTGATCAAATCTGTGGGATGTCATCTGTCC
AGCAGTTTGTGGCTCTGCTTCTCCTGCACTCTCCTGTATACCGCCGTACA
TAACATCAAACATGTGTCCTGCTCAGTCTCGACAACTAGTTTGTAAGGGC
TTCTCTGTCCCCCGTACTGTAGGTAACATGTAAAGATTCAAAAGAAGAAG
CGCCGACAACCTTGACGGAACCGAGGGGCTTGATGACCCCCAGACAGCTG
AAGCCA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10073:2553..3508-

>mRNA_H-canaliculatus_F_contig10073.104.1 ID=mRNA_H-canaliculatus_F_contig10073.104.1|Name=mRNA_H-canaliculatus_F_contig10073.104.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=372bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10073:2553..3508- (Hapterophycus canaliculatus Oshoro5f female)
ATGGGCGCCGAGGAGAGGGCGGGCAGCCCCGTCACGACCACCTATCGCTC
CCTACGCGGAGTGTTTACAGCGGGCCTCAAGGGCTTCTACAACACCGTCG
AGATGGGCGCCGAGGAGAGGGCGGGCAGCCCCGTCACGACCACCTATCGC
TCCCTACGCGGAGTGTTTACAGCGGGCCTCAAGGGCTTCTACAACACCGT
CGAGGTAACATGTAAAGATTCAAAAGAAGAAGCGCCGACAACCTTGACGG
AACCGAGGGGCTTGATGACCCCCAGACAGCTGAAGCCAGTAACATGTAAA
GATTCAAAAGAAGAAGCGCCGACAACCTTGACGGAACCGAGGGGCTTGAT
GACCCCCAGACAGCTGAAGCCA
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