mRNA_H-canaliculatus_F_contig10073.103.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10073.103.1
Unique NamemRNA_H-canaliculatus_F_contig10073.103.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10073.103.1 vs. uniprot
Match: D8LQV5_ECTSI (Acyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQV5_ECTSI)

HSP 1 Score: 100 bits (250), Expect = 1.230e-23
Identity = 46/49 (93.88%), Postives = 46/49 (93.88%), Query Frame = 1 
Query:    1 EAVPPPGECAILCPNHGNSLTDAISVVSQSPRMVRLTAKDNLWKDPIFG 147
            EAVPP GEC ILCPNHGNSLTDAISVVSQ PRMVRLTAKDNLWKDPIFG
Sbjct:   39 EAVPPQGECTILCPNHGNSLTDAISVVSQCPRMVRLTAKDNLWKDPIFG 87
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10073.103.1 vs. uniprot
Match: A0A4P9Y7P6_9FUNG (PlsC domain-containing protein n=1 Tax=Piptocephalis cylindrospora TaxID=1907219 RepID=A0A4P9Y7P6_9FUNG)

HSP 1 Score: 62.4 bits (150), Expect = 4.560e-10
Identity = 29/52 (55.77%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:    1 EAVPPPGECAILCPNHGNSLTDAISVVSQSPR---MVRLTAKDNLWKDPIFG 147
            E +PP G  +ILCPNH NSLTD + +V+ +PR   MVR+TAKD LW   +FG
Sbjct:   43 ENLPPDGVPSILCPNHSNSLTDGVLMVTSAPRQRAMVRMTAKDTLWDHWVFG 94
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10073.103.1 vs. uniprot
Match: A0A2R5GMB5_9STRA (Glycerol-3-phosphate O-acyltransferase 1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GMB5_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 1.160e-9
Identity = 25/49 (51.02%), Postives = 36/49 (73.47%), Query Frame = 1 
Query:    1 EAVPPPGECAILCPNHGNSLTDAISVVSQSPRMVRLTAKDNLWKDPIFG 147
            E +P  GE  +LC NHGNSLTD++ ++SQ+PR++R  AK+ LW  P+ G
Sbjct:   34 ENLPAEGEPTLLCFNHGNSLTDSVVLISQTPRVIRFCAKNTLWDMPVVG 82
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10073.103.1 vs. uniprot
Match: U9UXF9_RHIID (PlsC domain-containing protein n=9 Tax=Glomeraceae TaxID=36751 RepID=U9UXF9_RHIID)

HSP 1 Score: 52.8 bits (125), Expect = 1.140e-6
Identity = 28/54 (51.85%), Postives = 34/54 (62.96%), Query Frame = 1 
Query:    1 EAVPPPGECAILCPNHGNSLTDAISVVSQSPR----MVRLTAKDNLWK-DPIFG 147
            E +PP G   ILCPNH NSLTD I ++S  P     M+R+TAKD  WK + IF 
Sbjct:   29 ENIPPDGCPTILCPNHSNSLTDPILLLSVVPPEKRDMIRMTAKDTFWKKNDIFS 82
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10073.103.1 vs. uniprot
Match: A0A397IDT0_9GLOM (PlsC domain-containing protein n=1 Tax=Diversispora epigaea TaxID=1348612 RepID=A0A397IDT0_9GLOM)

HSP 1 Score: 51.6 bits (122), Expect = 2.920e-6
Identity = 24/48 (50.00%), Postives = 31/48 (64.58%), Query Frame = 1 
Query:    1 EAVPPPGECAILCPNHGNSLTDAISVVSQSPR----MVRLTAKDNLWK 132
            E +PP G   ILCPNH NSLTD + ++S  P     +VR+TAKD  W+
Sbjct:   29 ENIPPDGCPTILCPNHSNSLTDPVCLLSSIPSKKRDLVRMTAKDTFWR 76
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10073.103.1 vs. uniprot
Match: K5W1Q6_AGABU (PlsC domain-containing protein n=3 Tax=Agaricus bisporus TaxID=5341 RepID=K5W1Q6_AGABU)

HSP 1 Score: 48.5 bits (114), Expect = 3.580e-5
Identity = 24/50 (48.00%), Postives = 31/50 (62.00%), Query Frame = 1 
Query:    7 VPPPGECAILCPNHGNSLTDAI----SVVSQSPRMVRLTAKDNLWKDPIF 144
            +P  G   ++CPNHGNSLTDA+    S+ SQ   M+RLTAK   +  P F
Sbjct:   38 IPKTGRPCVVCPNHGNSLTDALILTTSIPSQRRNMLRLTAKATQFGHPTF 87
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10073.103.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LQV5_ECTSI1.230e-2393.88Acyltransferase n=1 Tax=Ectocarpus siliculosus Tax... [more]
A0A4P9Y7P6_9FUNG4.560e-1055.77PlsC domain-containing protein n=1 Tax=Piptocephal... [more]
A0A2R5GMB5_9STRA1.160e-951.02Glycerol-3-phosphate O-acyltransferase 1 n=1 Tax=H... [more]
U9UXF9_RHIID1.140e-651.85PlsC domain-containing protein n=9 Tax=Glomeraceae... [more]
A0A397IDT0_9GLOM2.920e-650.00PlsC domain-containing protein n=1 Tax=Diversispor... [more]
K5W1Q6_AGABU3.580e-548.00PlsC domain-containing protein n=3 Tax=Agaricus bi... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10073contigH-canaliculatus_F_contig10073:86..235 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.8
Seed ortholog evalue3.9e-19
Seed eggNOG ortholog2880.D8LQV5
KEGG rclassRC00004,RC00039,RC00041
KEGG koko:K13507
KEGG ReactionR00851,R09380
KEGG Pathwayko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110
KEGG ModuleM00089
EggNOG free text desc.Phosphate acyltransferases
EggNOG OGs28NCQ@1,2QUY6@2759
EC2.3.1.15,2.3.1.42
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01004
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size150
Cds size150
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928635.001389-CDS-H-canaliculatus_F_contig10073:85..2351622928635.001389-CDS-H-canaliculatus_F_contig10073:85..235Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10073 86..235 -
1696845505.7670076-CDS-H-canaliculatus_F_contig10073:85..2351696845505.7670076-CDS-H-canaliculatus_F_contig10073:85..235Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10073 86..235 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10073.103.1prot_H-canaliculatus_F_contig10073.103.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10073 86..235 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10073.103.1

>prot_H-canaliculatus_F_contig10073.103.1 ID=prot_H-canaliculatus_F_contig10073.103.1|Name=mRNA_H-canaliculatus_F_contig10073.103.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=50bp
EAVPPPGECAILCPNHGNSLTDAISVVSQSPRMVRLTAKDNLWKDPIFG*
back to top

mRNA from alignment at H-canaliculatus_F_contig10073:86..235-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10073.103.1 ID=mRNA_H-canaliculatus_F_contig10073.103.1|Name=mRNA_H-canaliculatus_F_contig10073.103.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=150bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10073:86..235- (Hapterophycus canaliculatus Oshoro5f female)
GAGGCGGTACCGCCGCCGGGGGAGTGCGCCATCCTGTGCCCCAACCACGG
GAACAGCCTGACGGATGCAATCTCCGTCGTCAGCCAGTCCCCCCGCATGG
TGCGGCTCACGGCGAAGGACAACCTGTGGAAGGACCCCATTTTCGGGTAG
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10073:86..235-

>mRNA_H-canaliculatus_F_contig10073.103.1 ID=mRNA_H-canaliculatus_F_contig10073.103.1|Name=mRNA_H-canaliculatus_F_contig10073.103.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=300bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10073:86..235- (Hapterophycus canaliculatus Oshoro5f female)
GAGGCGGTACCGCCGCCGGGGGAGTGCGCCATCCTGTGCCCCAACCACGG
GAACAGCCTGACGGATGCAATCTCCGTCGTCAGCCAGTCCCCCCGCATGG
TGCGGCTCACGGCGAAGGACAACCTGTGGAAGGACCCCATTTTCGGGTAG
GAGGCGGTACCGCCGCCGGGGGAGTGCGCCATCCTGTGCCCCAACCACGG
GAACAGCCTGACGGATGCAATCTCCGTCGTCAGCCAGTCCCCCCGCATGG
TGCGGCTCACGGCGAAGGACAACCTGTGGAAGGACCCCATTTTCGGGTAG
back to top