mRNA_H-canaliculatus_F_contig10071.102.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10071.102.1
Unique NamemRNA_H-canaliculatus_F_contig10071.102.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig10071.102.1 vs. uniprot
Match: D8LGN4_ECTSI (Uncharacterized protein n=5 Tax=Eukaryota TaxID=2759 RepID=D8LGN4_ECTSI)

HSP 1 Score: 136 bits (342), Expect = 5.970e-39
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 2 
Query:    2 MPAVVVRQRKAWRRKDGVFIYFEDNGGVIVNNKGEMKGSAINGPVAKECADLWPRIASNAGSIV 193
            MPAVVVRQRKAWRRKDGVFIYFEDNGGVIVNNKGEMKGSAINGPVAKECADLWPRIASNAGSIV
Sbjct:   77 MPAVVVRQRKAWRRKDGVFIYFEDNGGVIVNNKGEMKGSAINGPVAKECADLWPRIASNAGSIV 140
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BLAST of mRNA_H-canaliculatus_F_contig10071.102.1 vs. uniprot
Match: A0A4D9D4M8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D4M8_9STRA)

HSP 1 Score: 128 bits (322), Expect = 6.720e-36
Identity = 58/64 (90.62%), Postives = 62/64 (96.88%), Query Frame = 2 
Query:    2 MPAVVVRQRKAWRRKDGVFIYFEDNGGVIVNNKGEMKGSAINGPVAKECADLWPRIASNAGSIV 193
            MPAVV+RQRKAWRRKDG+FIYFEDN GVIVNNKGEMKGSAI GPVAKECADLWPRIASN+G+IV
Sbjct:   78 MPAVVIRQRKAWRRKDGIFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNSGTIV 141
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BLAST of mRNA_H-canaliculatus_F_contig10071.102.1 vs. uniprot
Match: X8IUP7_9AGAM (60S ribosomal protein L17/L23 n=4 Tax=Agaricomycetes TaxID=155619 RepID=X8IUP7_9AGAM)

HSP 1 Score: 125 bits (313), Expect = 2.650e-35
Identity = 57/64 (89.06%), Postives = 61/64 (95.31%), Query Frame = 2 
Query:    2 MPAVVVRQRKAWRRKDGVFIYFEDNGGVIVNNKGEMKGSAINGPVAKECADLWPRIASNAGSIV 193
            MPAVVVRQRKAWRR+DGVF+YFEDN GVIVN KGEMKGSAI GPVAKECADLWPRIASNAG++V
Sbjct:   18 MPAVVVRQRKAWRRRDGVFLYFEDNAGVIVNPKGEMKGSAITGPVAKECADLWPRIASNAGTVV 81
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BLAST of mRNA_H-canaliculatus_F_contig10071.102.1 vs. uniprot
Match: A0A8H5HE30_9AGAR (Uncharacterized protein n=2 Tax=Agaricomycetes TaxID=155619 RepID=A0A8H5HE30_9AGAR)

HSP 1 Score: 125 bits (313), Expect = 6.410e-35
Identity = 57/64 (89.06%), Postives = 61/64 (95.31%), Query Frame = 2 
Query:    2 MPAVVVRQRKAWRRKDGVFIYFEDNGGVIVNNKGEMKGSAINGPVAKECADLWPRIASNAGSIV 193
            MPAVVVRQRKAWRR+DGVF+YFEDN GVIVN KGEMKGSAI GPVAKECADLWPRIASNAG++V
Sbjct:   48 MPAVVVRQRKAWRRRDGVFLYFEDNAGVIVNPKGEMKGSAITGPVAKECADLWPRIASNAGTVV 111
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BLAST of mRNA_H-canaliculatus_F_contig10071.102.1 vs. uniprot
Match: S7PVB1_GLOTA (Ribosomal protein L14b/L23e n=5 Tax=Agaricomycetes TaxID=155619 RepID=S7PVB1_GLOTA)

HSP 1 Score: 125 bits (315), Expect = 7.540e-35
Identity = 57/64 (89.06%), Postives = 61/64 (95.31%), Query Frame = 2 
Query:    2 MPAVVVRQRKAWRRKDGVFIYFEDNGGVIVNNKGEMKGSAINGPVAKECADLWPRIASNAGSIV 193
            MPAV+VRQRKAWRRKDGVF+YFEDN GVIVN KGEMKGSAI GPVAKECADLWPRIASNAG++V
Sbjct:   77 MPAVIVRQRKAWRRKDGVFLYFEDNAGVIVNPKGEMKGSAITGPVAKECADLWPRIASNAGTVV 140
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10071.102.1 vs. uniprot
Match: W4JRC5_HETIT (Uncharacterized protein n=2 Tax=Agaricomycetes incertae sedis TaxID=355688 RepID=W4JRC5_HETIT)

HSP 1 Score: 125 bits (314), Expect = 1.040e-34
Identity = 55/64 (85.94%), Postives = 62/64 (96.88%), Query Frame = 2 
Query:    2 MPAVVVRQRKAWRRKDGVFIYFEDNGGVIVNNKGEMKGSAINGPVAKECADLWPRIASNAGSIV 193
            MPAVV+RQRK+WRR+DG+F+YFEDN GVIVNNKGEMKGSAI GPVAKECADLWPRIASNAG++V
Sbjct:   76 MPAVVIRQRKSWRRRDGLFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGTVV 139
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BLAST of mRNA_H-canaliculatus_F_contig10071.102.1 vs. uniprot
Match: M5C8V1_THACB (60S ribosomal protein L23 n=33 Tax=Agaricomycotina TaxID=5302 RepID=M5C8V1_THACB)

HSP 1 Score: 125 bits (313), Expect = 1.390e-34
Identity = 57/64 (89.06%), Postives = 61/64 (95.31%), Query Frame = 2 
Query:    2 MPAVVVRQRKAWRRKDGVFIYFEDNGGVIVNNKGEMKGSAINGPVAKECADLWPRIASNAGSIV 193
            MPAVVVRQRKAWRR+DGVF+YFEDN GVIVN KGEMKGSAI GPVAKECADLWPRIASNAG++V
Sbjct:   74 MPAVVVRQRKAWRRRDGVFLYFEDNAGVIVNPKGEMKGSAITGPVAKECADLWPRIASNAGTVV 137
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10071.102.1 vs. uniprot
Match: K5UTQ8_PHACS (Uncharacterized protein n=3 Tax=Polyporales TaxID=5303 RepID=K5UTQ8_PHACS)

HSP 1 Score: 125 bits (313), Expect = 1.470e-34
Identity = 57/64 (89.06%), Postives = 61/64 (95.31%), Query Frame = 2 
Query:    2 MPAVVVRQRKAWRRKDGVFIYFEDNGGVIVNNKGEMKGSAINGPVAKECADLWPRIASNAGSIV 193
            MPAVVVRQRKAWRR+DGVF+YFEDN GVIVN KGEMKGSAI GPVAKECADLWPRIASNAG++V
Sbjct:   76 MPAVVVRQRKAWRRRDGVFLYFEDNAGVIVNPKGEMKGSAITGPVAKECADLWPRIASNAGTVV 139
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10071.102.1 vs. uniprot
Match: A0A0C3B0B2_9AGAM (Uncharacterized protein n=2 Tax=Serendipita TaxID=358905 RepID=A0A0C3B0B2_9AGAM)

HSP 1 Score: 125 bits (313), Expect = 1.470e-34
Identity = 57/64 (89.06%), Postives = 61/64 (95.31%), Query Frame = 2 
Query:    2 MPAVVVRQRKAWRRKDGVFIYFEDNGGVIVNNKGEMKGSAINGPVAKECADLWPRIASNAGSIV 193
            MPAVVVRQRKAWRR+DGVF+YFEDN GVIVN KGEMKGSAI GPVAKECADLWPRIASNAG++V
Sbjct:   76 MPAVVVRQRKAWRRRDGVFLYFEDNAGVIVNAKGEMKGSAITGPVAKECADLWPRIASNAGTVV 139
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10071.102.1 vs. uniprot
Match: RL23A_SCHPO (60S ribosomal protein L23-A n=6 Tax=cellular organisms TaxID=131567 RepID=RL23A_SCHPO)

HSP 1 Score: 124 bits (312), Expect = 2.090e-34
Identity = 56/64 (87.50%), Postives = 61/64 (95.31%), Query Frame = 2 
Query:    2 MPAVVVRQRKAWRRKDGVFIYFEDNGGVIVNNKGEMKGSAINGPVAKECADLWPRIASNAGSIV 193
            MPA+VVRQRKAWRRKDGV++YFEDN GVIVN KGEMKGSAI GPVAKECADLWPRIASNAG++V
Sbjct:   76 MPAIVVRQRKAWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAKECADLWPRIASNAGTVV 139
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10071.102.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGN4_ECTSI5.970e-39100.00Uncharacterized protein n=5 Tax=Eukaryota TaxID=27... [more]
A0A4D9D4M8_9STRA6.720e-3690.63Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
X8IUP7_9AGAM2.650e-3589.0660S ribosomal protein L17/L23 n=4 Tax=Agaricomycet... [more]
A0A8H5HE30_9AGAR6.410e-3589.06Uncharacterized protein n=2 Tax=Agaricomycetes Tax... [more]
S7PVB1_GLOTA7.540e-3589.06Ribosomal protein L14b/L23e n=5 Tax=Agaricomycetes... [more]
W4JRC5_HETIT1.040e-3485.94Uncharacterized protein n=2 Tax=Agaricomycetes inc... [more]
M5C8V1_THACB1.390e-3489.0660S ribosomal protein L23 n=33 Tax=Agaricomycotina... [more]
K5UTQ8_PHACS1.470e-3489.06Uncharacterized protein n=3 Tax=Polyporales TaxID=... [more]
A0A0C3B0B2_9AGAM1.470e-3489.06Uncharacterized protein n=2 Tax=Serendipita TaxID=... [more]
RL23A_SCHPO2.090e-3487.5060S ribosomal protein L23-A n=6 Tax=cellular organ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10071contigH-canaliculatus_F_contig10071:3891..5039 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size352
Cds size348
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928634.8390255-CDS-H-canaliculatus_F_contig10071:3892..41271622928634.8390255-CDS-H-canaliculatus_F_contig10071:3892..4127Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10071 3893..4127 -
1696845505.7100167-CDS-H-canaliculatus_F_contig10071:3892..41271696845505.7100167-CDS-H-canaliculatus_F_contig10071:3892..4127Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10071 3893..4127 -
1622928634.8577852-CDS-H-canaliculatus_F_contig10071:4926..50391622928634.8577852-CDS-H-canaliculatus_F_contig10071:4926..5039Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10071 4927..5039 -
1696845505.7215874-CDS-H-canaliculatus_F_contig10071:4926..50391696845505.7215874-CDS-H-canaliculatus_F_contig10071:4926..5039Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10071 4927..5039 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10071.102.1prot_H-canaliculatus_F_contig10071.102.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10071 3893..5039 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10071.102.1

>prot_H-canaliculatus_F_contig10071.102.1 ID=prot_H-canaliculatus_F_contig10071.102.1|Name=mRNA_H-canaliculatus_F_contig10071.102.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=116bp
DACRGGEAAQGLEAEGRRVHLLRGQRRRYREQQGRDEGLRDQRPRGQGVR
RPLAPYRQQRRFHRLRKLNGTHGLTRLELQCSPGNARTGTNLFVGGKLRG
SRRCGVLSTRICVVCC
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mRNA from alignment at H-canaliculatus_F_contig10071:3891..5039-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10071.102.1 ID=mRNA_H-canaliculatus_F_contig10071.102.1|Name=mRNA_H-canaliculatus_F_contig10071.102.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1149bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10071:3891..5039- (Hapterophycus canaliculatus Oshoro5f female)
GATGCCTGCCGTGGTGGTGAGGCAGCGCAAGGCCTGGAGGCGGAAGGACG
GCGTGTTCATCTACTTCGAGGACAACGGAGGCGTTATCGTGAACAACAAG
GGCGAGATGAAGGGTGAGTCCGGAGCGCGTGGTGGTACACGTTACACGTG
CATGGTCCCAGGAAGGGCGTCGGGGAGGAGAGTCCGACCTTCCAACCGGC
ACGATTCGGGTGTTTGATCTTCCACGAAGTTGAATTTTGGAGAGCCATCC
AGCGGCGTCGCATAGACGCCAAAATGGCTTGTCTGTTGTTGCTGTTTCCT
CGGCCACCCCGCCGCGTTGTGTGTAAGGGTGTTTGCCGTTGTGTCGTTTG
TGACGGGATCTTGTCTAGTCTATTAATAGAGTCGGCTTGGCTTTCTGCCG
ACAACTCGCACTTTGCATCACTAGTGGCGTAGAACTAGTCATCATTGGTG
TTCCCACGCGGGAACTTCGTTGTTCCGCACTACCTGCAGAGTTCGCACGC
CACTTTGAGCTCGCCGAGACTTGCCCGAGAATCACTTTTCATCACCTGGG
TCAGGAAGGAAAGGCATGAAGTCTGTAGACATGGCTCCGCCCCTCCTGTT
GTCTGGACGGCAATCGAGAAACGTTCTCAGCCACAGCTTTTACGGAGCAC
GCGGGGCGTGCGGGAAATGCGTGCGATCCCGGGCAGGCACTAGGGGGGGA
CTTTTCACCTCCCCGTGCGCACCTTATTCGTTCGACGCGACTTTTACTCC
CTTTAGTCTGGCTTCGCGTCCGAAGTTGGGCGTTCCAATTTGTGTCGTTT
TCCCCAAAAAAACTTTAACGGCGGCGTTCGCCGCCGAGCCGCCCTTGCGG
TCGTTTAGCCCCTCAAGTAACCTCGCCCCCCCCGCCTCCGTTGTCGTTTT
GTCGTTTTGAAGGCTCCGCGATCAACGGCCCCGTGGCCAAGGAGTGCGCC
GACCTCTGGCCCCGTATCGCCAGCAACGCCGGTTCCATCGTCTAAGGAAA
CTGAACGGAACACACGGACTAACGCGACTGGAGTTGCAGTGCTCCCCAGG
AAATGCACGCACTGGCACAAACCTCTTTGTCGGAGGAAAATTGCGAGGCA
GCAGGCGGTGTGGTGTCTTGTCGACAAGGATTTGCGTCGTTTGCTGCGT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10071:3891..5039-

>mRNA_H-canaliculatus_F_contig10071.102.1 ID=mRNA_H-canaliculatus_F_contig10071.102.1|Name=mRNA_H-canaliculatus_F_contig10071.102.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=696bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10071:3891..5039- (Hapterophycus canaliculatus Oshoro5f female)
GATGCCTGCCGTGGTGGTGAGGCAGCGCAAGGCCTGGAGGCGGAAGGACG
GCGTGTTCATCTACTTCGAGGACAACGGAGGCGTTATCGTGAACAACAAG
GGCGAGATGAAGGGATGCCTGCCGTGGTGGTGAGGCAGCGCAAGGCCTGG
AGGCGGAAGGACGGCGTGTTCATCTACTTCGAGGACAACGGAGGCGTTAT
CGTGAACAACAAGGGCGAGATGAAGGGCTCCGCGATCAACGGCCCCGTGG
CCAAGGAGTGCGCCGACCTCTGGCCCCGTATCGCCAGCAACGCCGGTTCC
ATCGTCTAAGGAAACTGAACGGAACACACGGACTAACGCGACTGGAGTTG
CAGTGCTCCCCAGGAAATGCACGCACTGGCACAAACCTCTTTGTCGGAGG
AAAATTGCGAGGCAGCAGGCGGTGTGGTGTCTTGTCGACAAGGATTTGCG
TCGTTTGCTGCGCTCCGCGATCAACGGCCCCGTGGCCAAGGAGTGCGCCG
ACCTCTGGCCCCGTATCGCCAGCAACGCCGGTTCCATCGTCTAAGGAAAC
TGAACGGAACACACGGACTAACGCGACTGGAGTTGCAGTGCTCCCCAGGA
AATGCACGCACTGGCACAAACCTCTTTGTCGGAGGAAAATTGCGAGGCAG
CAGGCGGTGTGGTGTCTTGTCGACAAGGATTTGCGTCGTTTGCTGC
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