mRNA_H-canaliculatus_F_contig10071.101.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10071.101.1
Unique NamemRNA_H-canaliculatus_F_contig10071.101.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig10071.101.1 vs. uniprot
Match: A0A388JRW7_CHABU (Uncharacterized protein n=2 Tax=Chara braunii TaxID=69332 RepID=A0A388JRW7_CHABU)

HSP 1 Score: 52.0 bits (123), Expect = 3.050e-6
Identity = 23/54 (42.59%), Postives = 34/54 (62.96%), Query Frame = 1 
Query:   10 KKLYQASLLRAVKKTAGEGLFPLFLVDSPHYSRRDLEDVWGAAKRAGFEAYVVD 171
            +++Y+AS+ +A KKT  EG F   +VD  +    D    W AAKR+G+E YV+D
Sbjct: 1211 EEVYKASMFKAFKKTLEEGRFTFIIVDDRNVLVADFSQYWAAAKRSGYEVYVLD 1264
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10071.101.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A388JRW7_CHABU3.050e-642.59Uncharacterized protein n=2 Tax=Chara braunii TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10071contigH-canaliculatus_F_contig10071:142..315 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size174
Cds size174
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928634.9070246-CDS-H-canaliculatus_F_contig10071:141..3151622928634.9070246-CDS-H-canaliculatus_F_contig10071:141..315Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10071 142..315 -
1696845505.7349193-CDS-H-canaliculatus_F_contig10071:141..3151696845505.7349193-CDS-H-canaliculatus_F_contig10071:141..315Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10071 142..315 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10071.101.1prot_H-canaliculatus_F_contig10071.101.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10071 142..315 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10071.101.1

>prot_H-canaliculatus_F_contig10071.101.1 ID=prot_H-canaliculatus_F_contig10071.101.1|Name=mRNA_H-canaliculatus_F_contig10071.101.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=58bp
APTKKLYQASLLRAVKKTAGEGLFPLFLVDSPHYSRRDLEDVWGAAKRAG
FEAYVVDL
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mRNA from alignment at H-canaliculatus_F_contig10071:142..315-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10071.101.1 ID=mRNA_H-canaliculatus_F_contig10071.101.1|Name=mRNA_H-canaliculatus_F_contig10071.101.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=174bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10071:142..315- (Hapterophycus canaliculatus Oshoro5f female)
GCACCGACAAAAAAGCTGTACCAGGCCAGCCTGCTCCGCGCGGTGAAGAA
GACAGCCGGGGAAGGTTTGTTCCCGCTCTTCTTGGTGGATAGCCCCCACT
ACTCTAGGCGAGACCTAGAGGATGTGTGGGGTGCCGCGAAGAGGGCCGGT
TTCGAGGCCTACGTGGTAGACCTT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10071:142..315-

>mRNA_H-canaliculatus_F_contig10071.101.1 ID=mRNA_H-canaliculatus_F_contig10071.101.1|Name=mRNA_H-canaliculatus_F_contig10071.101.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=348bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10071:142..315- (Hapterophycus canaliculatus Oshoro5f female)
GCACCGACAAAAAAGCTGTACCAGGCCAGCCTGCTCCGCGCGGTGAAGAA
GACAGCCGGGGAAGGTTTGTTCCCGCTCTTCTTGGTGGATAGCCCCCACT
ACTCTAGGCGAGACCTAGAGGATGTGTGGGGTGCCGCGAAGAGGGCCGGT
TTCGAGGCCTACGTGGTAGACCTTGCACCGACAAAAAAGCTGTACCAGGC
CAGCCTGCTCCGCGCGGTGAAGAAGACAGCCGGGGAAGGTTTGTTCCCGC
TCTTCTTGGTGGATAGCCCCCACTACTCTAGGCGAGACCTAGAGGATGTG
TGGGGTGCCGCGAAGAGGGCCGGTTTCGAGGCCTACGTGGTAGACCTT
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