mRNA_H-canaliculatus_F_contig10070.100.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10070.100.1
Unique NamemRNA_H-canaliculatus_F_contig10070.100.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10070.100.1 vs. uniprot
Match: A0A6H5JNS7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNS7_9PHAE)

HSP 1 Score: 250 bits (639), Expect = 2.580e-80
Identity = 115/204 (56.37%), Postives = 142/204 (69.61%), Query Frame = 1 
Query:    1 VKERQLARTDPDVLAKYGGGDVWPMAAAWDLGEVLPNGNYLENDDIAVSHGVCGDTPQSGDTNENVYSTPNSEWEVLEDYEPGAIIDIDVIITNYHWGHIEFFLCCTADLDDPDGVPKQSCFNKYPLNRAEDDSFNSPVDTNYPGRYFIDPPCRGENEEVDQT-RPELEGV---LMDGTVNHMRYQLPDITCDHAILMMRYREY 600
            V+ R +   DPDVLA YG G+ W + AAWD+GE  PN NYLE+D IAV HGVCGD PQ G  N N YSTPN+ W  +  YE G+II+I  +I N HWGHIE+FLC TAD+DDPDGV  Q C N +PL+R E D +NSP+D  YPGR+F++P CRG NEE DQ+ RP L G    L  G +N+ RY LP+I C+H +L M+Y  Y
Sbjct:   12 VQARTITNIDPDVLADYGDGNYWIVGAAWDMGERCPNNNYLESDKIAVGHGVCGDPPQGGLDNPNTYSTPNTLWPPISTYESGSIIEIRTVINNNHWGHIEYFLCDTADMDDPDGVVTQDCLNMHPLDRDETDWWNSPIDQEYPGRFFVNPDCRGGNEETDQSGRPVLTGGGLGLDKGYINNGRYHLPNIQCEHCVLQMKYYAY 215
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10070.100.1 vs. uniprot
Match: A0A6H5JMP7_9PHAE (Chitin-binding type-4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMP7_9PHAE)

HSP 1 Score: 253 bits (645), Expect = 8.960e-80
Identity = 117/204 (57.35%), Postives = 143/204 (70.10%), Query Frame = 1 
Query:    1 VKERQLARTDPDVLAKYGGGDVWPMAAAWDLGEVLPNGNYLENDDIAVSHGVCGDTPQSGDTNENVYSTPNSEWEVLEDYEPGAIIDIDVIITNYHWGHIEFFLCCTADLDDPDGVPKQSCFNKYPLNRAEDDSFNSPVDTNYPGRYFIDPPCRGENEEVDQT-RPEL---EGVLMDGTVNHMRYQLPDITCDHAILMMRYREY 600
            V+ R +   DPDVLA YGGGDVW + AAWD GE  PN NYLE+D IAV HGVCGD PQ G  N N YSTPN+ W  +  Y+ G+II++  +I N HWGHIE+FLC TAD+DDPDGV  Q C N YPL+R E D +NSP+D +YPGR+F++P CRGE  E DQT RP L   E  L +G +N  RY LP+I C+H +L M+Y  Y
Sbjct:  110 VQARTIDNIDPDVLADYGGGDVWIVGAAWDKGERCPNNNYLESDKIAVGHGVCGDPPQGGLDNPNTYSTPNTLWPPISTYQSGSIIELKAVINNNHWGHIEYFLCDTADMDDPDGVVTQDCLNMYPLDRDETDWWNSPIDPDYPGRFFVNPECRGETGETDQTGRPMLNDGEVGLDNGYINVGRYHLPNIQCEHCVLQMKYYAY 313
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10070.100.1 vs. uniprot
Match: D8LED9_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LED9_ECTSI)

HSP 1 Score: 252 bits (644), Expect = 1.070e-77
Identity = 115/204 (56.37%), Postives = 142/204 (69.61%), Query Frame = 1 
Query:    1 VKERQLARTDPDVLAKYGGGDVWPMAAAWDLGEVLPNGNYLENDDIAVSHGVCGDTPQSGDTNENVYSTPNSEWEVLEDYEPGAIIDIDVIITNYHWGHIEFFLCCTADLDDPDGVPKQSCFNKYPLNRAEDDSFNSPVDTNYPGRYFIDPPCRGENEEVDQT-RPELEGV---LMDGTVNHMRYQLPDITCDHAILMMRYREY 600
            V+ R +   DPD+LA YGGGDVW + AAWD GE  PN NYLE+D IAV HGVCGD PQ G  N N YST N+ W  +  Y  G+II++  +I N HWGHIE+FLC TAD+DDPD V  Q C N YPL+R E D +NSP+D +YPGR+F++P CRG+NEE DQ+ RP L G    L +G +N  RY LP+I CDH +L M+Y  Y
Sbjct:   89 VQARTIDNIDPDILADYGGGDVWIVGAAWDKGERCPNNNYLESDKIAVGHGVCGDPPQGGLDNPNTYSTSNTLWRPISTYTSGSIIELKAVINNNHWGHIEYFLCDTADMDDPDDVVTQDCLNMYPLDRDETDGWNSPIDPDYPGRFFVNPECRGQNEETDQSGRPVLSGGDSGLDNGYINVGRYHLPNIQCDHCVLQMKYYAY 292
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10070.100.1 vs. uniprot
Match: D8LED7_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LED7_ECTSI)

HSP 1 Score: 253 bits (647), Expect = 8.910e-76
Identity = 117/204 (57.35%), Postives = 143/204 (70.10%), Query Frame = 1 
Query:    1 VKERQLARTDPDVLAKYGGGDVWPMAAAWDLGEVLPNGNYLENDDIAVSHGVCGDTPQSGDTNENVYSTPNSEWEVLEDYEPGAIIDIDVIITNYHWGHIEFFLCCTADLDDPDGVPKQSCFNKYPLNRAEDDSFNSPVDTNYPGRYFIDPPCRGENEEVDQT-RPEL---EGVLMDGTVNHMRYQLPDITCDHAILMMRYREY 600
            V+ R +   DPD+LA YGGGDVW + AAWD GE  PN NYLE+D IAV HGVCGD PQ G  N N YSTPN+ W  +  Y  G+II++  +I N HWGHIE+FLC TAD+DDPDGV  Q C N YPL+R E D +NSP+D +YPGR+F++P CRGEN E DQT RP L   E  L +G +N  RY LP+I C+H +L M+Y  Y
Sbjct:   68 VQARTIDNIDPDILADYGGGDVWIVGAAWDKGERCPNNNYLESDKIAVGHGVCGDPPQGGLDNPNTYSTPNTLWPPISTYTSGSIIELKAVINNNHWGHIEYFLCDTADMDDPDGVVTQDCLNMYPLDRDETDWWNSPIDPDYPGRFFVNPECRGENGETDQTGRPMLNDGEVGLDNGYINVGRYHLPNIQCEHCVLQMKYYAY 271
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10070.100.1 vs. uniprot
Match: A0A6H5JN72_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JN72_9PHAE)

HSP 1 Score: 236 bits (603), Expect = 5.720e-71
Identity = 112/223 (50.22%), Postives = 142/223 (63.68%), Query Frame = 1 
Query:    1 VKERQLARTDPDVLAKYGGGDVWPMAAAWDLGEVLPNGNYLENDDIAVSHGVCGDTPQSGDTNENVYSTPNSEWEVLEDYEPGAIIDIDVIITNYHWGHIEFFLCCTADLDDPDGVPKQSCFNKYPLNRAEDDSFNSPVDTNYPGRYFIDPPCRGENEEVDQTRPEL--EG-VLMD--------------------GTVNHMRYQLPDITCDHAILMMRYREY 600
            V+ R +   DPD+LA YG GDVW + AAWD GE  PN NYLE+D IAV HGVCGD PQ G  N N YSTPN+ W  +  Y+ G+II++  +I N HWGHIE+FLC TAD+DDPDGV  Q C N YPL+R E D +NSP+D +YPGR+F++P CRGE  E DQ+   +  +G V +D                    G +N  RY LP+I C+H +L M+Y  Y
Sbjct:   75 VQARTIDNIDPDILADYGDGDVWIVGAAWDKGERCPNNNYLESDKIAVGHGVCGDPPQGGLDNPNTYSTPNTLWPPISTYQSGSIIELKAVINNNHWGHIEYFLCDTADMDDPDGVVTQDCLNMYPLDRDETDWWNSPIDPDYPGRFFVNPECRGETGETDQSGRSMLNDGEVGLDHVSIMYAYQVYGTSSWRSAKGYINTGRYHLPNIQCEHCVLQMKYYAY 297
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10070.100.1 vs. uniprot
Match: D7G4D7_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4D7_ECTSI)

HSP 1 Score: 229 bits (583), Expect = 7.660e-71
Identity = 104/198 (52.53%), Postives = 135/198 (68.18%), Query Frame = 1 
Query:    1 VKERQLARTDPDVLAKYGGGDVWPMAAAWDLGEVLPNGNYLENDDIAVSHGVCGDTPQSGDTNENVYSTPNSEWEVLEDYEPGAIIDIDVIITNYHWGHIEFFLCCTADLDDPDGVPKQSCFNKYPLNRAEDDSFNSPVDTNYPGRYFIDPPCRGENEEVDQTRPELEGVLMDGTVNHMRYQLPD-ITCDHAILMMRY 591
            VKER +  TDP VLA+YG G+ WP+  A++ GE+  NGNYLE D+IA  HG+CGD  Q+ +   N YSTPN +W +L  Y+ G +++I + +T YHWGH+EFF+C   +++DPDG+  Q CFN YPL RAE D  NSP+D NYPGRY++DP CR    E DQT+PE      DG V H  YQLP+ +TCD  IL M Y
Sbjct:   29 VKERGMVNTDPAVLAEYGDGE-WPLRWAYEKGEMAENGNYLEKDEIAKRHGICGDPEQNEEEGANFYSTPNGDWPILNTYQEGQVLEIKLGMTAYHWGHVEFFICNADEMEDPDGIANQECFNNYPLTRAEGDDENSPIDPNYPGRYYVDPKCR--EGETDQTKPE---GAQDGYVIHASYQLPEGLTCDRCILQMNY 220
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10070.100.1 vs. uniprot
Match: D8LED5_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LED5_ECTSI)

HSP 1 Score: 222 bits (566), Expect = 1.560e-67
Identity = 103/174 (59.20%), Postives = 125/174 (71.84%), Query Frame = 1 
Query:   91 LGEVLPNGNYLENDDIAVSHGVCGDTPQSGDTNENVYSTPNSEWEVLEDYEPGAIIDIDVIITNYHWGHIEFFLCCTADLDDPDGVPKQSCFNKYPLNRAEDDSFNSPVDTNYPGRYFIDPPCRGENEEVDQT-RPELEGV---LMDGTVNHMRYQLPDITCDHAILMMRYREY 600
            +GE  PN NYLE+D IAV HGVCGD PQ G  N N YSTPN+ W  +  YE G+II+I  +I N HWGHIE+FLC TAD+DD DGV  Q C NKYPL+R E D +NSP+D NYPGR+F++P CRGENEE DQ+ RPEL G    L  G +N+ RY LP+I C+H +L M+Y  Y
Sbjct:    1 MGERCPNNNYLESDKIAVGHGVCGDPPQGGLDNPNTYSTPNTLWPPISTYESGSIIEIRAVINNNHWGHIEYFLCDTADMDDADGVVTQDCLNKYPLDRDETDWWNSPIDPNYPGRFFVNPECRGENEETDQSGRPELTGGGLGLDKGYINNGRYHLPNIQCEHCVLQMKYYAY 174
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10070.100.1 vs. uniprot
Match: A0A6H5JJ37_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ37_9PHAE)

HSP 1 Score: 220 bits (561), Expect = 5.960e-63
Identity = 104/197 (52.79%), Postives = 130/197 (65.99%), Query Frame = 1 
Query:    1 VKERQLARTDPDVLAKYGGGDVWPMAAAWDLGEVLPNGNYLENDDIAVSHGVCGDTPQSGDTNENVYSTPNSEWEVLEDYEPGAIIDIDVIITNYHWGHIEFFLCCTADLDDPDGVPKQSCFNKYPLNRAEDDSFNSPVDTNYPGRYFIDPPCRGENEEVDQTRPELEGVLMDGTVNHMRYQLPDITCDHAILMMRY 591
            VKER  A+TDP VL +YGGGD +P+      G+   NGNYLE D+IA  HG+CGD  Q+ D   NVYST N  W+VL+ ++ G +++ID+I+  YHWGH EFFLC   ++DDPDGVP Q CFN+YPL RA DD   SP+D NYPGRY++DP CR    E +Q  PE  G      +  MRY LPDI CD  +L M Y
Sbjct:   65 VKERAKAKTDPAVLNEYGGGDEYPLY----FGDFADNGNYLETDEIAKRHGICGDPEQNADEGSNVYSTANIGWDVLDSFKSGEVLEIDIIMNAYHWGHCEFFLCNADEMDDPDGVPTQECFNRYPLTRAADDGNASPIDPNYPGRYYVDPECRAG--ETEQGSPE--GAPKGYNIK-MRYVLPDIECDRCVLQMVY 252
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10070.100.1 vs. uniprot
Match: D8LMS9_ECTSI (EsV-1-166 n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LMS9_ECTSI)

HSP 1 Score: 210 bits (535), Expect = 1.570e-62
Identity = 97/197 (49.24%), Postives = 126/197 (63.96%), Query Frame = 1 
Query:    1 VKERQLARTDPDVLAKYGGGDVWPMAAAWDLGEVLPNGNYLENDDIAVSHGVCGDTPQSGDTNENVYSTPNSEWEVLEDYEPGAIIDIDVIITNYHWGHIEFFLCCTADLDDPDGVPKQSCFNKYPLNRAEDDSFNSPVDTNYPGRYFIDPPCRGENEEVDQTRPELEGVLMDGTVNHMRYQLPDITCDHAILMMRY 591
            VK+R     D   L  YGGG+ +P+      GE   NGNYLE ++IA  HGVCGD  Q+ D   NVYST N  W+ L+ +  G ++++D+++  YHWGH EFF+C T D+DDPDGVP Q CFN +PL RA+DD   SP+D NYPGRY++DP CR   EE +Q+   +EG  +      MRY LPDI C+H IL M Y
Sbjct:   61 VKQRAYDNVDSATLDAYGGGEEFPLY----FGEFADNGNYLETNEIAKRHGVCGDPEQNADEGTNVYSTANINWDPLDSFTSGQVLEMDIVMNAYHWGHCEFFVCNTDDMDDPDGVPTQECFNMHPLTRADDDGDASPIDPNYPGRYYVDPECR--EEETEQSSNSIEGYNIK-----MRYVLPDIECEHCILQMVY 246
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10070.100.1 vs. uniprot
Match: D7FZR0_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZR0_ECTSI)

HSP 1 Score: 208 bits (529), Expect = 3.370e-62
Identity = 99/197 (50.25%), Postives = 127/197 (64.47%), Query Frame = 1 
Query:    1 VKERQLARTDPDVLAKYGGGDVWPMAAAWDLGEVLPNGNYLENDDIAVSHGVCGDTPQSGDTNENVYSTPNSEWEVLEDYEPGAIIDIDVIITNYHWGHIEFFLCCTADLDDPDGVPKQSCFNKYPLNRAEDDSFNSPVDTNYPGRYFIDPPCRGENEEVDQTRPELEGVLMDGTVNHMRYQLPDITCDHAILMMRY 591
             K R +   DPDVL  +GGG  +P+A       + PNGNYLE +++AV HGVCGD  Q+     N YST +S WE L  Y  G +++  +++  +HWGH+EFF+C  AD +DPDG+P Q CFN+YPL RAE D  NSP+D N+PGRY+ DP CRG+  EVDQT+P L  +   G    MRY LPDI C H IL M Y
Sbjct:   59 TKARGIELMDPDVLESHGGGSEFPLAFV----PLAPNGNYLEPNEVAVRHGVCGDPEQTKPAGSNTYSTASSNWEPLATYRSGQVLEFVIVMNAHHWGHLEFFIC-NAD-NDPDGIPTQECFNEYPLTRAEGDDDNSPIDPNFPGRYYCDPTCRGQTGEVDQTKP-LHAI--SGENMKMRYVLPDIECSHCILQMVY 246
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10070.100.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JNS7_9PHAE2.580e-8056.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMP7_9PHAE8.960e-8057.35Chitin-binding type-4 domain-containing protein n=... [more]
D8LED9_ECTSI1.070e-7756.37EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D8LED7_ECTSI8.910e-7657.35EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5JN72_9PHAE5.720e-7150.22Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7G4D7_ECTSI7.660e-7152.53EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D8LED5_ECTSI1.560e-6759.20EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5JJ37_9PHAE5.960e-6352.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LMS9_ECTSI1.570e-6249.24EsV-1-166 n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LM... [more]
D7FZR0_ECTSI3.370e-6250.25EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10070contigH-canaliculatus_F_contig10070:1954..4688 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score254.6
Seed ortholog evalue3.8e-65
Seed eggNOG ortholog2880.D8LED7
KEGG koko:K01315
KEGG Pathwayko04080,ko04610,ko05150,ko05164,map04080,map04610,map05150,map05164
EggNOG free text desc.protein xylosyltransferase activity
EggNOG OGsKOG4157@1,KOG4157@2759
EC3.4.21.7
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko04147,ko04516
Hectar predicted targeting categoryother localisation
Exons4
Model size600
Cds size600
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10070.100.1prot_H-canaliculatus_F_contig10070.100.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10070 1954..4688 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928634.7260768-CDS-H-canaliculatus_F_contig10070:1953..21271622928634.7260768-CDS-H-canaliculatus_F_contig10070:1953..2127Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10070 1954..2127 +
1696845505.668383-CDS-H-canaliculatus_F_contig10070:1953..21271696845505.668383-CDS-H-canaliculatus_F_contig10070:1953..2127Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10070 1954..2127 +
1622928634.738747-CDS-H-canaliculatus_F_contig10070:2804..29211622928634.738747-CDS-H-canaliculatus_F_contig10070:2804..2921Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10070 2805..2921 +
1696845505.6822286-CDS-H-canaliculatus_F_contig10070:2804..29211696845505.6822286-CDS-H-canaliculatus_F_contig10070:2804..2921Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10070 2805..2921 +
1622928634.7529328-CDS-H-canaliculatus_F_contig10070:3334..35041622928634.7529328-CDS-H-canaliculatus_F_contig10070:3334..3504Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10070 3335..3504 +
1696845505.6929257-CDS-H-canaliculatus_F_contig10070:3334..35041696845505.6929257-CDS-H-canaliculatus_F_contig10070:3334..3504Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10070 3335..3504 +
1622928634.767599-CDS-H-canaliculatus_F_contig10070:4549..46881622928634.767599-CDS-H-canaliculatus_F_contig10070:4549..4688Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10070 4550..4688 +
1696845505.7012446-CDS-H-canaliculatus_F_contig10070:4549..46881696845505.7012446-CDS-H-canaliculatus_F_contig10070:4549..4688Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10070 4550..4688 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10070.100.1

>prot_H-canaliculatus_F_contig10070.100.1 ID=prot_H-canaliculatus_F_contig10070.100.1|Name=mRNA_H-canaliculatus_F_contig10070.100.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=200bp
VKERQLARTDPDVLAKYGGGDVWPMAAAWDLGEVLPNGNYLENDDIAVSH
GVCGDTPQSGDTNENVYSTPNSEWEVLEDYEPGAIIDIDVIITNYHWGHI
EFFLCCTADLDDPDGVPKQSCFNKYPLNRAEDDSFNSPVDTNYPGRYFID
PPCRGENEEVDQTRPELEGVLMDGTVNHMRYQLPDITCDHAILMMRYREY
back to top

mRNA from alignment at H-canaliculatus_F_contig10070:1954..4688+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10070.100.1 ID=mRNA_H-canaliculatus_F_contig10070.100.1|Name=mRNA_H-canaliculatus_F_contig10070.100.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2735bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10070:1954..4688+ (Hapterophycus canaliculatus Oshoro5f female)
GTAAAGGAACGGCAGCTCGCCCGGACGGATCCTGATGTGCTTGCAAAATA
CGGTGGTGGCGACGTGTGGCCCATGGCGGCGGCATGGGATCTCGGTGAAG
TTTTGCCTAACGGTAACTACCTTGAGAACGACGATATCGCCGTATCGCAC
GGCGTCTGCGGGGACACGCCGCAGGTAAGGGAGACTTGGCAAGTCTCGTC
ATTTCTTTCACGGTAGCAGGGGCAGGTACGATAGCAGTAGTAGCAGCAAA
CACGAGTGCGGGCGAACGACAGAATCGGAATGTTAATGTTTTAGAAAGTG
TGCTCCCGTATAAAGTCATCAGGCTAATTCCTTTCCACCTGGTTTACCAG
ATAGACTACAAGGACAAGAGATTAGAGCACACGAGTGCGCAATGCGTCTA
AGGTGGACCCTTTCATCGCATGAGCGCGATCCGGTCACATCTTTCTCATC
GTTCGGGATCAGCTGATGGAGCATTCCCGAAGTCTCTCGCAGTCCTTCAA
TCCGATACGAGACCGTTGCGCATGTTTTGTTCATGCGTCTGATTTCATTT
TCACAATGATGTTGGTTGACATTTTGATGTTTGCCGCTGAACGGTACCAA
GAGAACGAAGAGTCTCCGTAGCCTGCCGGCCCGATCTTATGGGGGTTGTG
CTGTTCGGATCAAGGACAAAACAAATCACACCTACATGCGGCACATGTTC
ATACCGCTCTTTGTACCCGCCGGTACAGCGCTACCAGTGCTCCCCAAACG
TGGATTTCCTTGGAAACACCACATTTTTTCGAATCGGCACTATGCGCTTT
GTTCTCTGTTGCGTACGTCCCACCCCCTCCCTGGGGCTTGCGCACTTGAA
GAGCGGCGACACTAATGAAAACGTCTACAGCACCCCCAACTCTGAGTGGG
AGGTCCTGGAAGATTACGAGCCCGGAGCCATCATCGACATCGACGTCATC
ATCACCAACTACCACTGGGTGAGTATGAGAGGCGGTCAAGAAGGCAAGGA
GGGGGCAAAAGGAGGAAAACCTGGTGCTTCCGTGGGAGACCACGTCAGCT
TTATTTGATTACTGCGATCGCGTTCTTGAGGAGTGTAAGGCGTGGATGAT
GCCTGGGATGATACCTGTACATGTGGTCGACAACCTCGTTCCGGTCTTGA
ATTCTTCGCATCTTCTTCGCATCTGTTGAAGAGTGCTGGCAGACTCGAGT
ACTGTATCGTTTTTAGACTCGCATACTTCAGGAGCAAGTCAGCCAGACTC
GTCGGCGGTGCAACATTTCAAACGTAGACCTCCTGCACCTGGTCTGCCAA
CACCCGATGGCTTGATGCAATTCGCAAACGAAATATTGCACCCCCCCACT
TCCCCTGCCGTCGTCGTGAATCGTCTGCCAGGGCCACATAGAATTCTTCT
TGTGCTGCACCGCCGACCTCGACGATCCTGACGGGGTTCCGAAGCAGTCG
TGCTTCAACAAATACCCACTAAATCGAGCAGAGGATGATTCCTTCAACAG
CCCTGTAGACACAAATTACCCCGGGCGGTACTTCATCGACCCCCCCTGCA
GGTGGGACGCGTGGATTCACTTGAACACGAAGCGAGAGTTTGGAGTCACT
TTCAGCAGCTTGTGAGAGTGGAGGGTGGGTCTACCCCAATCCTGAGGTCT
CACCATGTTTCCTTCCCCGTCTTCAATCCAAAATCTACATCTAATATCCC
TGGCTGTGCGCGTGCATCATTTTAGCCGGCAGAGTTATGATGGAAGGCTT
TTCTGTTTCGAGAGTTAATCCTGTTCACGAAATCAAAGGGCGAAAACCAT
CACCCATTCTTACCATGCGCACTACATGAGAGAAGCGAGATGCCTGTACT
TCGTTGGTCACCATATTACTAAAAAACGGTCATGCTAAATAGCCGCGCAC
AAGGCTGTCACTCTGGGGAGTACGATGCAGCATGTTTCACGAAAATCTGC
TTTTGGGAGTTGGGAGAAGCTAGGCTCATCCGCAAGGAAAGTTTCTGCCA
CCGGCCAGATCATTTTCGGGTTATTTTGCACAGTCAGTTCTGCGGCACGT
GCACTCTTCGTCGCCGATTTTTCACCGAGTTGTTGCCGTATTGATGCGAG
ATCAAGCTCTTATCAAAACGCCTGGTGCGCCTGTCTCGAATAGACGTATG
CCGCGTTCTTTGATCTTTGAAGGCCTAGGAGGAATGGTAGCCCCACAGGT
CCTATGTTGCGGGCCAACATGATGGTGTGGTGGCCGGTAGCTCGTTCGAT
TTTCGATTAAAGCGGCTGCGTCTCCATATTCCATGCAAGTAACCCCAAAT
CGATTGCATCCAAGTCGAATTTAGATTTGGGTTTGGTATTCGGAGGGAAG
TGTCGAGACCAACCCTAAAATGGCGTATTGCGACAGCACTTACGCAGGCT
CAGATCGGAAGGTCGTGATGTTGTGAGATCGGGCCTGGATACCCGTTCCA
AATCACCAAGTTGACGCGTTGAACTAAGCACAGACCATCTATAAGCACGA
TGCCTTTGATAAGCGCGTTGCATGCGAGACAAACGGCAATTTCGCTTGTG
CTTTCTCTCCGTGTGGTAATGCGGTATGCTGTACTCGCGCTCGTAGGGGC
GAGAATGAGGAGGTGGACCAGACGAGACCGGAGCTGGAAGGGGTGCTGAT
GGATGGCACCGTGAACCACATGAGGTACCAGCTACCCGATATCACCTGCG
ACCACGCCATCCTGATGATGCGCTACCGTGAGTAC
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10070:1954..4688+

>mRNA_H-canaliculatus_F_contig10070.100.1 ID=mRNA_H-canaliculatus_F_contig10070.100.1|Name=mRNA_H-canaliculatus_F_contig10070.100.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1200bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10070:1954..4688+ (Hapterophycus canaliculatus Oshoro5f female)
GTAAAGGAACGGCAGCTCGCCCGGACGGATCCTGATGTGCTTGCAAAATA
CGGTGGTGGCGACGTGTGGCCCATGGCGGCGGCATGGGATCTCGGTGAAG
TTTTGCCTAACGGTAACTACCTTGAGAACGACGATATCGCCGTATCGCAC
GGCGTCTGCGGGGACACGCCGCAGGTAAAGGAACGGCAGCTCGCCCGGAC
GGATCCTGATGTGCTTGCAAAATACGGTGGTGGCGACGTGTGGCCCATGG
CGGCGGCATGGGATCTCGGTGAAGTTTTGCCTAACGGTAACTACCTTGAG
AACGACGATATCGCCGTATCGCACGGCGTCTGCGGGGACACGCCGCAGAG
CGGCGACACTAATGAAAACGTCTACAGCACCCCCAACTCTGAGTGGGAGG
TCCTGGAAGATTACGAGCCCGGAGCCATCATCGACATCGACGTCATCATC
ACCAACTACCACTGGAGCGGCGACACTAATGAAAACGTCTACAGCACCCC
CAACTCTGAGTGGGAGGTCCTGGAAGATTACGAGCCCGGAGCCATCATCG
ACATCGACGTCATCATCACCAACTACCACTGGGGCCACATAGAATTCTTC
TTGTGCTGCACCGCCGACCTCGACGATCCTGACGGGGTTCCGAAGCAGTC
GTGCTTCAACAAATACCCACTAAATCGAGCAGAGGATGATTCCTTCAACA
GCCCTGTAGACACAAATTACCCCGGGCGGTACTTCATCGACCCCCCCTGC
AGGGCCACATAGAATTCTTCTTGTGCTGCACCGCCGACCTCGACGATCCT
GACGGGGTTCCGAAGCAGTCGTGCTTCAACAAATACCCACTAAATCGAGC
AGAGGATGATTCCTTCAACAGCCCTGTAGACACAAATTACCCCGGGCGGT
ACTTCATCGACCCCCCCTGCAGGGGCGAGAATGAGGAGGTGGACCAGACG
AGACCGGAGCTGGAAGGGGTGCTGATGGATGGCACCGTGAACCACATGAG
GTACCAGCTACCCGATATCACCTGCGACCACGCCATCCTGATGATGCGCT
ACCGTGAGTACGGGCGAGAATGAGGAGGTGGACCAGACGAGACCGGAGCT
GGAAGGGGTGCTGATGGATGGCACCGTGAACCACATGAGGTACCAGCTAC
CCGATATCACCTGCGACCACGCCATCCTGATGATGCGCTACCGTGAGTAC
back to top