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Homology
BLAST of mRNA_H-canaliculatus_F_contig1007.98.1 vs. uniprot
Match: D8LEG2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEG2_ECTSI) HSP 1 Score: 197 bits (500), Expect = 1.040e-51 Identity = 138/263 (52.47%), Postives = 164/263 (62.36%), Query Frame = 2
Query: 536 FTQMEKRVFDEAEELAEHRKALSLARVRLHEQQMEMALQMSEIRKALELMKRVDSIDDAPARRLAVELGTLACDRGERAARRAGGNSGDSSAVDNGSIEAMALGQGAVY---DGRRRFGGXXXXXXXXXXXAMRASSWRERSTEGLGVEDR-HHLFAVPCDGTARTMRAAASRAVGDARDGARVVGTGACAYADEAGARQALEKVRSLLSSDGGRWERTTRSRGRDGGTGGXXXXXXXXGMAGLSIHGWARKLQPVAIANGSF 1312
+MEK V DEAE LAE RKAL LARVRLHE QMEM LQMSEIRKALE+MKRVDSI+DAPARRLA+ELGTLACDRG+ AARRA NSGD A D G + +A + AVY DGR + A+S R +G+ V DR H LF PC+ T R A D V+ GA AYADEAGAR+AL+KVRS+++S G WE + S G+G XX GLS+HGWA++LQ AIA G++
Sbjct: 318 IAEMEKGVVDEAEGLAEQRKALVLARVRLHEHQMEMVLQMSEIRKALEVMKRVDSIEDAPARRLALELGTLACDRGQSAARRAE-NSGDFLAADGGDVGTLARRERAVYGSSDGR--------------GIQITAASCEGRGGQGVEVRDRSHQLFLTPCEETGR-----------GATD---VMRMGAGAYADEAGAREALDKVRSMIASGGKGWEVASGS-----GSGXXXADEGGGSWEGLSVHGWAQRLQAAAIATGAY 546
BLAST of mRNA_H-canaliculatus_F_contig1007.98.1 vs. uniprot
Match: A0A6H5JRQ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRQ9_9PHAE) HSP 1 Score: 190 bits (482), Expect = 1.170e-47 Identity = 134/262 (51.15%), Postives = 162/262 (61.83%), Query Frame = 2
Query: 542 QMEKRVFDEAEELAEHRKALSLARVRLHEQQMEMALQMSEIRKALELMKRVDSIDDAPARRLAVELGTLACDRGERAARRAGGNSGDSSAVDNGSIEAMALGQGAVYDGRRRFGGXXXXXXXXXXXAMRASSWRERSTEGLGVEDR-HHLFAVPCDGTARTMRAAA----SRAVGDARDGARVVGTGACAYADEAGARQALEKVRSLLSSDGGRWERTTRSRGRDGGTGGXXXXXXXXGMAGLSIHGWARKLQPVAIANGSF 1312
QME+ V +EAE LAE RKAL+LARVRLHE QMEM LQMSEIRKALE+MKRVDSI+DAPARRLA+ELGTLACDRG+ AARRA NS D A D + +A + AV+ G G + A+ R G+ V DR H + PC+ TA T AAA S A R V+ GA AYADEAGAR+AL+KVRS+++S G WE + S G+GG GL +HGWAR+LQ AIA G++
Sbjct: 600 QMERGVVNEAEGLAEQRKALALARVRLHEHQMEMVLQMSEIRKALEVMKRVDSIEDAPARRLALELGTLACDRGQSAARRAE-NSRDFLAADGDDVGTLARREWAVHGGSDGRG-----------FQITAAPCEGRGGLGVEVRDRSHQVLLAPCEETAGTTTAAAAATASTATCQGRGATDVMRMGAGAYADEAGAREALDKVRSVIASGGKEWEVASGS-----GSGGS--------WEGLPVHGWARRLQAAAIATGAY 836
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-21_004820.1 |
| Exons | 5 |
| Model size | 1553 |
| Cds size | 786 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622928634.3893967-UTR-H-canaliculatus_F_contig1007:336..502 | 1622928634.3893967-UTR-H-canaliculatus_F_contig1007:336..502 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig1007 337..502 + |
| 1696845505.3887737-UTR-H-canaliculatus_F_contig1007:336..502 | 1696845505.3887737-UTR-H-canaliculatus_F_contig1007:336..502 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig1007 337..502 + |
| 1622928634.4496298-UTR-H-canaliculatus_F_contig1007:2740..3341 | 1622928634.4496298-UTR-H-canaliculatus_F_contig1007:2740..3341 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig1007 2741..3341 + |
| 1696845505.4450738-UTR-H-canaliculatus_F_contig1007:2740..3341 | 1696845505.4450738-UTR-H-canaliculatus_F_contig1007:2740..3341 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig1007 2741..3341 + |
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1007.98.1 >prot_H-canaliculatus_F_contig1007.98.1 ID=prot_H-canaliculatus_F_contig1007.98.1|Name=mRNA_H-canaliculatus_F_contig1007.98.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=262bp
MEKRVFDEAEELAEHRKALSLARVRLHEQQMEMALQMSEIRKALELMKRV
DSIDDAPARRLAVELGTLACDRGERAARRAGGNSGDSSAVDNGSIEAMAL
GQGAVYDGRRRFGGDGGGGGSDGGAAMRASSWRERSTEGLGVEDRHHLFA
VPCDGTARTMRAAASRAVGDARDGARVVGTGACAYADEAGARQALEKVRS
LLSSDGGRWERTTRSRGRDGGTGGGGADEGGGGMAGLSIHGWARKLQPVA
IANGSFTGSIQ* back to topmRNA from alignment at H-canaliculatus_F_contig1007:337..3341+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-canaliculatus_F_contig1007.98.1 ID=mRNA_H-canaliculatus_F_contig1007.98.1|Name=mRNA_H-canaliculatus_F_contig1007.98.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3005bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1007:337..3341+ (Hapterophycus canaliculatus Oshoro5f female)
CTCCCCGGACCCCAGACATAATGCAAAGACAATTCGACGGGTTTCAATAA
ACAACGGTTTGTTTCGTTTATGACTCAACAAACCTGCCTTTTATTTGTCA
ATTATGCGGACATTTGTCCCAATTCGACGTATCGTGCACGCATAATGCGC
CGGTTCGAAACTCTTCGTAAGTCCTGCCCAATACATACCGTTCCGACAAG
CGTAGTGACTACAGAGACAGCAATGCAGAAAGCTGCTCAAACATGTACTC
TCGTTTCTAAACCTGGTACCTCGTTCTGACTCAAGCTCTCTGCCATCCAC
ACACAAAACGCACAAGGTTCAGCATTAGAAGACGTGTATGAGCGCATCCT
ACCCCTACCCCCCCCCCCCCCCCCCCCCCCCCCCGCGACCCCCCCTCTCC
CCCCCCCCGCCCCCCCCCCCATCTTGGGCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCTCCCCCTTCCGTCTGACATCGCCACCCTTATGCCGTCTCCAC
GTACGCTGGAACATAATCGCTCGCCCTCGTGAACGTTTACACAGATGGAG
AAAAGAGTGTTTGACGAGGCGGAAGAATTGGCGGAACATCGTAAGGCACT
TTCGCTGGCGAGAGTGCGCCTGCACGAGCAACAGATGGAAATGGCGCTGC
AGGCGAGTCGCGTCCGGTTTCATATTGGTGGGTGAATAGCGTCGTCCGTG
CTTTGTCTGCTAGGGGAAATCACCAGCATATCGCAATCAAACCCAAGTGG
GATCAGTACTGCCGGAAGGAAGATTCTCTTCCTTTCGATACCTTCTCCTT
CGTAACCTCCCCTTCTCCTTCGTAACCGTCCCCATCCTGATGCTGCTCCC
CGTAAAAGCTGAATGAACTGCGATCCATTTGTACACTTCAATGCATGCGT
CGACGGCGCAGATGTCGGAGATTCGCAAAGCACTCGAGTTGATGAAACGC
GTTGATTCGATCGACGACGCGCCAGCCCGACGTCTGGCCGTCGAGCTAGG
AACGCTCGCGTGCGACCGAGGGGAGAGGGCGGCGCGCCGAGCAGGAGGAA
ACTCGGGGGATAGTTCTGCCGTTGATAATGGCAGCATCGAGGCGATGGCT
CTGGGACAGGGTGCGGTTTATGATGGGCGTAGACGTTTTGGCGGAGACGG
CGGTGGCGGTGGTAGCGACGGTGGTGCTGCAATGAGAGCCTCTTCCTGGC
GAGAAAGGAGCACGGAAGGTTTGGGGGTTGAAGATCGCCATCATCTGTTT
GCCGTACCATGTGACGGCACAGGTAAGAAAAAAAATGCGGGAAATTCCGG
AGCAGCCTGCACCAAAGCACGATGAAGAGTCTCCACGATATCTCTCGTTA
ATCGGTCCCGTGCCCATAACGAACGGTATCATCGTGGGGTACGTCGCTGA
AGCACGCCGCTTTCGTGCATCGCCGAAAGTTGAAGCTCGTCGGTGTTCAG
AGGAGTCGAGTACGCTCGACGCCCATTTGGGGTTCCTTGTACCATATGGC
TATGTCACGCGGTGGGAGCGCAAGAAGGCTTTGAAAGACATCATAACGAA
CATAGCCGACGAAAAGTAGTCGACCCCGTTGCAAACCGTGCTTCGAATCA
CCCCCTCCACGGGGGCTCATTTGCATCCACACGATCGCCATGCGTGCATG
ACTCGGGGATGACGTCCGTGTGCGCCAGCTCGCACGATGCGGGCGGCTGC
TTCGAGAGCGGTGGGCGACGCGCGAGATGGAGCGCGCGTGGTGGGGACAG
GGGCCTGCGCGTATGCGGACGAGGCTGGTGCGAGGCAAGCTCTTGAGAAG
GTATGTGGCCAGCGCTAGCAGTACGGATCGACTCGGCCTTAATTGTTCTC
TATACGATGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCTTCTCTCTCTCTCGCTGTG
GGCAGCAAGCTACACCAACCTCGTGCTGTGCGTGCTCAAGTCTGAACTTC
AGAAAAACTTAGACTCTTCTCAACTGTTCGACATGAATGAGTGCCAGCAA
AGAGAACTCGATGCTATCATCATCATCACCACCATCTTCATCAACAAATG
AAACAAAAACAAACAAGGATCAACGCAGCAACAATGCCATCAATGAGAAG
CGACCCGGATTTTCTGGGCCTTTCAACTTCGCGTGGCACCTATCCTGAAC
TGGCGACAGGTACGCTCTTTGTTATCCTCGGATGGGGGACGTTGGGAACG
GACAACTAGATCACGCGGCCGAGACGGTGGCACCGGCGGAGGCGGCGCCG
ACGAAGGAGGGGGGGGCATGGCAGGCCTCTCGATTCACGGCTGGGCAAGG
AAGCTCCAGCCGGTCGCAATAGCTAACGGGTCATTCACCGGTAGCATTCA
ATGAAGTCCCCGTTGCTTTCTGCCCGTGTAGAAGTAAATGTGGAAGCAGA
GTAACTTACGCGCACATCCGATGAGCGTGTAACCGGCTGCCGATGTGTTG
TCCTGCCATCATGATTTTGTCTGGGTCGAGGCAAAAGAGGAGGTAAATAA
TACGTTTGCAGCCTGGGGGAGTAAAGTGTCTGGGCTGACACATCATGCCC
GAAAAACTTTGGGGTTTGATGTGGGTTGACTCCTTGGAAGCGGCTCGTAA
AGCAGCAGCCGTCGCCTGCGGTGATGCAGAACCGGCCCAAACCTCAGGAC
CGGGCATTCAACAACTTCGCGGTTCAGCTTGCCGGATGGAAGAACGTCCA
CACGCTGCTGGGAGGTTTTCACTTCCCACGTTGCCCTGAGAAACATACGG
AATCGGTGTGCAACCTCCACCTCGAACAAGTCTGAGAGGCCTCCAAAAGA
ATCGACTGAGGTTCTGTTCAAGATTTCCCTTTCATTGGTTGGAGTGGGCG
CAGCATGAGGGCCGGAAATGCTGCACAGACCCGGAGGCGGTGGCTGTCTC
ATGAGTTTCGACGCGGAGGAGAACATCGATGACGCTACCACCGTGGATCT
GCAGC back to topCoding sequence (CDS) from alignment at H-canaliculatus_F_contig1007:337..3341+ >mRNA_H-canaliculatus_F_contig1007.98.1 ID=mRNA_H-canaliculatus_F_contig1007.98.1|Name=mRNA_H-canaliculatus_F_contig1007.98.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1572bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1007:337..3341+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGAGAAAAGAGTGTTTGACGAGGCGGAAGAATTGGCGGAACATCGTAA
GGCACTTTCGCTGGCGAGAGTGCGCCTGCACGAGCAACAGATGGAAATGG
CGCTGCAGATGGAGAAAAGAGTGTTTGACGAGGCGGAAGAATTGGCGGAA
CATCGTAAGGCACTTTCGCTGGCGAGAGTGCGCCTGCACGAGCAACAGAT
GGAAATGGCGCTGCAGATGTCGGAGATTCGCAAAGCACTCGAGTTGATGA
AACGCGTTGATTCGATCGACGACGCGCCAGCCCGACGTCTGGCCGTCGAG
CTAGGAACGCTCGCGTGCGACCGAGGGGAGAGGGCGGCGCGCCGAGCAGG
AGGAAACTCGGGGGATAGTTCTGCCGTTGATAATGGCAGCATCGAGGCGA
TGGCTCTGGGACAGGGTGCGGTTTATGATGGGCGTAGACGTTTTGGCGGA
GACGGCGGTGGCGGTGGTAGCGACGGTGGTGCTGCAATGAGAGCCTCTTC
CTGGCGAGAAAGGAGCACGGAAGGTTTGGGGGTTGAAGATCGCCATCATC
TGTTTGCCGTACCATGTGACGGCACAGATGTCGGAGATTCGCAAAGCACT
CGAGTTGATGAAACGCGTTGATTCGATCGACGACGCGCCAGCCCGACGTC
TGGCCGTCGAGCTAGGAACGCTCGCGTGCGACCGAGGGGAGAGGGCGGCG
CGCCGAGCAGGAGGAAACTCGGGGGATAGTTCTGCCGTTGATAATGGCAG
CATCGAGGCGATGGCTCTGGGACAGGGTGCGGTTTATGATGGGCGTAGAC
GTTTTGGCGGAGACGGCGGTGGCGGTGGTAGCGACGGTGGTGCTGCAATG
AGAGCCTCTTCCTGGCGAGAAAGGAGCACGGAAGGTTTGGGGGTTGAAGA
TCGCCATCATCTGTTTGCCGTACCATGTGACGGCACAGCTCGCACGATGC
GGGCGGCTGCTTCGAGAGCGGTGGGCGACGCGCGAGATGGAGCGCGCGTG
GTGGGGACAGGGGCCTGCGCGTATGCGGACGAGGCTGGTGCGAGGCAAGC
TCTTGAGAAGCTCGCACGATGCGGGCGGCTGCTTCGAGAGCGGTGGGCGA
CGCGCGAGATGGAGCGCGCGTGGTGGGGACAGGGGCCTGCGCGTATGCGG
ACGAGGCTGGTGCGAGGCAAGCTCTTGAGAAGGTACGCTCTTTGTTATCC
TCGGATGGGGGACGTTGGGAACGGACAACTAGATCACGCGGCCGAGACGG
TGGCACCGGCGGAGGCGGCGCCGACGAAGGAGGGGGGGGCATGGCAGGCC
TCTCGATTCACGGCTGGGCAAGGAAGCTCCAGCCGGTCGCAATAGCTAAC
GGGTCATTCACCGGTAGCATTCAATGAGTACGCTCTTTGTTATCCTCGGA
TGGGGGACGTTGGGAACGGACAACTAGATCACGCGGCCGAGACGGTGGCA
CCGGCGGAGGCGGCGCCGACGAAGGAGGGGGGGGCATGGCAGGCCTCTCG
ATTCACGGCTGGGCAAGGAAGCTCCAGCCGGTCGCAATAGCTAACGGGTC
ATTCACCGGTAGCATTCAATGA back to top
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