mRNA_H-canaliculatus_F_contig1006.93.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1006.93.1
Unique NamemRNA_H-canaliculatus_F_contig1006.93.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1006.93.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1006contigH-canaliculatus_F_contig1006:28223..29534 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1312
Cds size735
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1006.93.1prot_H-canaliculatus_F_contig1006.93.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1006 28619..29353 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928634.0905344-UTR-H-canaliculatus_F_contig1006:28222..286181622928634.0905344-UTR-H-canaliculatus_F_contig1006:28222..28618Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1006 28223..28618 +
1696845505.181825-UTR-H-canaliculatus_F_contig1006:28222..286181696845505.181825-UTR-H-canaliculatus_F_contig1006:28222..28618Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1006 28223..28618 +
1622928634.109842-UTR-H-canaliculatus_F_contig1006:29353..295341622928634.109842-UTR-H-canaliculatus_F_contig1006:29353..29534Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1006 29354..29534 +
1696845505.203306-UTR-H-canaliculatus_F_contig1006:29353..295341696845505.203306-UTR-H-canaliculatus_F_contig1006:29353..29534Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1006 29354..29534 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928634.1005728-CDS-H-canaliculatus_F_contig1006:28618..293531622928634.1005728-CDS-H-canaliculatus_F_contig1006:28618..29353Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1006 28619..29353 +
1696845505.1914217-CDS-H-canaliculatus_F_contig1006:28618..293531696845505.1914217-CDS-H-canaliculatus_F_contig1006:28618..29353Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1006 28619..29353 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1006.93.1

>prot_H-canaliculatus_F_contig1006.93.1 ID=prot_H-canaliculatus_F_contig1006.93.1|Name=mRNA_H-canaliculatus_F_contig1006.93.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=245bp
MLERHSRRLHAILGSQTSERVPRDRDQPEEGHDARALYCSPVSAVAAGDS
LLLLAAEPPTPTTHLLALGEADMAPTQKSKMDDRSDGDVFVESVLNDDTL
KVAARCIEELLAPRSRTCHAEAATHRPKKTLRKEENAEHRPFIVDCRAHP
QVVQGKRRRPTDASLCCCCFQHRGIAWARLGRDPETSVSDVRIPSKQTGA
SRVGAIGVDYFSRAERSMETSTARCHDELPWNKSNIDRVVRAAV*
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mRNA from alignment at H-canaliculatus_F_contig1006:28223..29534+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1006.93.1 ID=mRNA_H-canaliculatus_F_contig1006.93.1|Name=mRNA_H-canaliculatus_F_contig1006.93.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1312bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1006:28223..29534+ (Hapterophycus canaliculatus Oshoro5f female)
GGCGTCCGTGCTTCTGGTTCAGAAGGTTGCGTATCACATGGCACAACTAA
GTTCCTCGTCGATCACCCCCGCACCCAATACACTGAATCACCACAAGTGA
CTGCCGGTGTGAGTTCTACCGAAATAAGTCAATAATCTCCTTTTCGCACA
CACTGACGCGCGCTGGAGGGCAAGAATAGAATCTATGGAGCATTCATGGC
TGCCATCAAGCAACACTGGTCGGGGCTGTAGCGAAGAAGGCGCGCACGAG
ACACACCGCGATCCAAGGGGTCACCACGACATACATTCAGATAAACGCCT
TCGCGATGCAATCGACACACGAAAACGTCGAGGTCGGGGTTTCTCGCGGT
CAGAACGAACCTCTACTGCAGAACACCCCGGGAAGCCTTGAGCTGAATGC
TAGAGAGGCATTCTAGGCGATTGCATGCGATTCTAGGTAGCCAGACGTCA
GAACGTGTTCCAAGGGATAGGGACCAGCCGGAAGAGGGTCATGACGCCAG
GGCCTTGTATTGTTCACCTGTTTCTGCCGTCGCGGCCGGTGACAGTCTCC
TTTTGCTCGCTGCGGAGCCCCCGACGCCGACAACACATCTTCTCGCCCTT
GGTGAAGCAGACATGGCCCCTACGCAAAAGAGCAAGATGGACGACCGTAG
CGACGGAGATGTTTTCGTGGAGTCAGTCTTGAATGACGACACCTTAAAAG
TCGCCGCTCGTTGTATTGAAGAACTACTGGCGCCTCGTAGCAGAACCTGC
CACGCAGAGGCTGCCACGCACAGGCCGAAGAAGACTCTGCGCAAGGAGGA
AAACGCTGAACACAGGCCGTTCATCGTTGACTGTAGAGCGCACCCTCAGG
TTGTACAAGGGAAAAGACGAAGACCAACAGACGCCTCTCTCTGCTGCTGC
TGTTTCCAGCATCGAGGAATCGCTTGGGCGAGGCTCGGGCGGGATCCAGA
AACGAGCGTTTCAGACGTTCGTATCCCTTCCAAGCAGACGGGAGCAAGCA
GGGTTGGGGCGATTGGCGTCGACTACTTCTCAAGGGCCGAACGGAGCATG
GAAACAAGCACAGCGAGGTGTCACGACGAGCTTCCATGGAACAAAAGCAA
CATTGACAGGGTAGTGCGTGCGGCTGTTTAGCGTCACTTGCGAAGGGATT
TGTCCGGCCCTCAGCAGGGCTCCCGGCCTTGTTCAATGTCGTCCCGTTTT
AAGGCAGGTACCGCCCTAAGCCAGGTCTCAGACTACCTACACATGGTCGG
TAGAGGCCCTGCTCAAGACTACACAAGTCGTGGAGCGTAGAGTGCTCGAG
CCATTGGTGAAT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1006:28223..29534+

>mRNA_H-canaliculatus_F_contig1006.93.1 ID=mRNA_H-canaliculatus_F_contig1006.93.1|Name=mRNA_H-canaliculatus_F_contig1006.93.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1470bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1006:28223..29534+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCTAGAGAGGCATTCTAGGCGATTGCATGCGATTCTAGGTAGCCAGAC
GTCAGAACGTGTTCCAAGGGATAGGGACCAGCCGGAAGAGGGTCATGACG
CCAGGGCCTTGTATTGTTCACCTGTTTCTGCCGTCGCGGCCGGTGACAGT
CTCCTTTTGCTCGCTGCGGAGCCCCCGACGCCGACAACACATCTTCTCGC
CCTTGGTGAAGCAGACATGGCCCCTACGCAAAAGAGCAAGATGGACGACC
GTAGCGACGGAGATGTTTTCGTGGAGTCAGTCTTGAATGACGACACCTTA
AAAGTCGCCGCTCGTTGTATTGAAGAACTACTGGCGCCTCGTAGCAGAAC
CTGCCACGCAGAGGCTGCCACGCACAGGCCGAAGAAGACTCTGCGCAAGG
AGGAAAACGCTGAACACAGGCCGTTCATCGTTGACTGTAGAGCGCACCCT
CAGGTTGTACAAGGGAAAAGACGAAGACCAACAGACGCCTCTCTCTGCTG
CTGCTGTTTCCAGCATCGAGGAATCGCTTGGGCGAGGCTCGGGCGGGATC
CAGAAACGAGCGTTTCAGACGTTCGTATCCCTTCCAAGCAGACGGGAGCA
AGCAGGGTTGGGGCGATTGGCGTCGACTACTTCTCAAGGGCCGAACGGAG
CATGGAAACAAGCACAGCGAGGTGTCACGACGAGCTTCCATGGAACAAAA
GCAACATTGACAGGGTAGTGCGTGCGGCTGTTTAGATGCTAGAGAGGCAT
TCTAGGCGATTGCATGCGATTCTAGGTAGCCAGACGTCAGAACGTGTTCC
AAGGGATAGGGACCAGCCGGAAGAGGGTCATGACGCCAGGGCCTTGTATT
GTTCACCTGTTTCTGCCGTCGCGGCCGGTGACAGTCTCCTTTTGCTCGCT
GCGGAGCCCCCGACGCCGACAACACATCTTCTCGCCCTTGGTGAAGCAGA
CATGGCCCCTACGCAAAAGAGCAAGATGGACGACCGTAGCGACGGAGATG
TTTTCGTGGAGTCAGTCTTGAATGACGACACCTTAAAAGTCGCCGCTCGT
TGTATTGAAGAACTACTGGCGCCTCGTAGCAGAACCTGCCACGCAGAGGC
TGCCACGCACAGGCCGAAGAAGACTCTGCGCAAGGAGGAAAACGCTGAAC
ACAGGCCGTTCATCGTTGACTGTAGAGCGCACCCTCAGGTTGTACAAGGG
AAAAGACGAAGACCAACAGACGCCTCTCTCTGCTGCTGCTGTTTCCAGCA
TCGAGGAATCGCTTGGGCGAGGCTCGGGCGGGATCCAGAAACGAGCGTTT
CAGACGTTCGTATCCCTTCCAAGCAGACGGGAGCAAGCAGGGTTGGGGCG
ATTGGCGTCGACTACTTCTCAAGGGCCGAACGGAGCATGGAAACAAGCAC
AGCGAGGTGTCACGACGAGCTTCCATGGAACAAAAGCAACATTGACAGGG
TAGTGCGTGCGGCTGTTTAG
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