mRNA_H-canaliculatus_F_contig10053.89.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
|
Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig10053.89.1 vs. uniprot
Match: D8LCJ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCJ8_ECTSI) HSP 1 Score: 358 bits (919), Expect = 1.690e-121 Identity = 167/213 (78.40%), Postives = 187/213 (87.79%), Query Frame = 1 Query: 28 DAACATSEFLCDLVAFLHDDVGLPTETLLRRLGFRVMRPGLPVGLDDIKDYVTRERVKKGGCCGVAEMMKFFAYTLTDYHRVVHLDTDTIILQPLDDLLDEGESLLYTADINMSNGKTPVMPVQGGFLVIRPDPRVFEDLVQIVKDTPFYPNRGWGRSEIGLFWGGITVQGLLPYYYERRAPPEVTYRAVDRCVYNNMVDRPDCQATDLSRVR 666
DAAC TSEFLCDLVAFLHD++GL TE LLRRLGFRVMRPGLP+ LD+I+D VTR R+ KGGCCG+AE+MK FAYTLT+YHRVVHLDTDTI+LQPLD LLD ESLLYTADINM + TPVMPVQGGFLV+RPDP VF+DLVQIVK T FYP++GWG S IGLFWGG+ VQG+LPYYYERRAP V YR+VDR VYNNMVDRP CQA D+S+VR
Sbjct: 87 DAACETSEFLCDLVAFLHDEIGLGTENLLRRLGFRVMRPGLPLSLDEIEDPVTRGRIAKGGCCGLAELMKLFAYTLTEYHRVVHLDTDTIVLQPLDALLDAEESLLYTADINMGSSYTPVMPVQGGFLVVRPDPEVFQDLVQIVKRTSFYPSKGWGGSMIGLFWGGVNVQGILPYYYERRAPAGVLYRSVDRSVYNNMVDRPSCQAVDISQVR 299
BLAST of mRNA_H-canaliculatus_F_contig10053.89.1 vs. uniprot
Match: A0A6H5JYN4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYN4_9PHAE) HSP 1 Score: 353 bits (905), Expect = 3.390e-118 Identity = 163/213 (76.53%), Postives = 184/213 (86.38%), Query Frame = 1 Query: 28 DAACATSEFLCDLVAFLHDDVGLPTETLLRRLGFRVMRPGLPVGLDDIKDYVTRERVKKGGCCGVAEMMKFFAYTLTDYHRVVHLDTDTIILQPLDDLLDEGESLLYTADINMSNGKTPVMPVQGGFLVIRPDPRVFEDLVQIVKDTPFYPNRGWGRSEIGLFWGGITVQGLLPYYYERRAPPEVTYRAVDRCVYNNMVDRPDCQATDLSRVR 666
DAAC TSEFLCDLVAFLHD++ L TE LLRRLGFRVMRPGLP+ LD+I+D VTR R+ KGGCCG AE+MK FAYTLT+YHRVVHLDTDTI+LQPLD LLD ESLLYT D+NM N TPVMPVQGGFLV+RPDP VF+DLVQ+VK TPFYP++GW S IGLFWGG+ VQG+LPYYYERRAP V+YR+VDR VYNNMVDRP CQA D+S+ R
Sbjct: 145 DAACETSEFLCDLVAFLHDEIELGTENLLRRLGFRVMRPGLPLNLDEIEDPVTRARIAKGGCCGPAELMKLFAYTLTEYHRVVHLDTDTIVLQPLDALLDAEESLLYTPDVNMGNSYTPVMPVQGGFLVVRPDPEVFQDLVQVVKRTPFYPSKGWAGSMIGLFWGGVNVQGILPYYYERRAPAGVSYRSVDRSVYNNMVDRPSCQAVDISQER 357
BLAST of mRNA_H-canaliculatus_F_contig10053.89.1 vs. uniprot
Match: W7U427_9STRA (Glycosyl transferase, family 8 (Fragment) n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7U427_9STRA) HSP 1 Score: 189 bits (481), Expect = 1.410e-56 Identity = 92/206 (44.66%), Postives = 133/206 (64.56%), Query Frame = 1 Query: 40 ATSEFLCDLVAFLHDDVGLPTETLLRRLGFRVMRPGLPVGLDDIKDYVTRERVKKGGCCGVAEMMKFFAYTLTDYHRVVHLDTDTIILQPLDDLLD-EGESLLYTADINMSNGKTPVMPVQGGFLVIRPDPRVFEDLVQIVKDTPFYPNRGWGRSEIGLFWGGITVQGLLPYYYERRAPPEVTYRAVDRCVYNNMVDRPDCQATDL 654
ATS++ D +A +H +V + LRR G++V+ +PV + DI+ RE + K GCCG E++K +A+TLTDYHRVVHLD D+++LQP+D+L D E ++ +YT D M+N + VQGGFL++RP+ FE LV VK F GWG IG +GG+T+QGLLPYY+ + PE++ + +D C YN M D+P C+ L
Sbjct: 1 ATSKYGVDFIAIVHPNV-TTSRAALRRSGWKVIERDIPVDITDIQGTFLREHIAKSGCCGATELLKLYAWTLTDYHRVVHLDMDSMLLQPMDELFDKEDKTFMYTCDYGMTNERLKACMVQGGFLLLRPNVTEFERLVDTVKIGDFRQGSGWGGKGIGWGYGGMTIQGLLPYYFLSLSDPELSLQ-LDHCKYNTMFDQPQCKNASL 204
BLAST of mRNA_H-canaliculatus_F_contig10053.89.1 vs. uniprot
Match: A0A7R9U0G1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U0G1_9STRA) HSP 1 Score: 184 bits (467), Expect = 1.170e-52 Identity = 87/204 (42.65%), Postives = 130/204 (63.73%), Query Frame = 1 Query: 79 HDDVGLPTETL--------LRRLGFRVMRPGLPVGLDDIKDYVTRERVKKGGCCGVAEMMKFFAYTLTDYHRVVHLDTDTIILQPLDDLLDEGESLLYTADINMSNGKTPVMPVQGGFLVIRPDPRVFEDLVQIVKDTPFYPNRGWGRSEIGLFWGGITVQGLLPYYYERRAPPEVTYRAVDRCVYNNMVDRPDCQATDLSRVR 666
H V L TE + L +LGFR+++ P+ ++DI+ R ++ GCCG+ E++K +++TLT++ VVHLDTD+++ Q +D+L ES+LYT+D M+ GK V PVQGGF V+RP VF +V +V+ F RGWG +G F+GG+T+QGLLPY+Y AP E + +DRC+YNNMV+ P C+A ++
Sbjct: 220 HHFVALVTEEVFEGKSAATLAKLGFRLVKKSAPLRVEDIEGEFLRSKIADDGCCGIDELIKLYSFTLTEFDHVVHLDTDSMVAQNMDELWGHEESMLYTSDYGMAKGKPSVPPVQGGFFVVRPSLTVFSAMVDVVRKGHF-TQRGWGDKRVGRFYGGMTIQGLLPYFYAFLAPEEASAE-LDRCIYNNMVENPRCKAIPTEEIK 421
BLAST of mRNA_H-canaliculatus_F_contig10053.89.1 vs. uniprot
Match: R1CNT5_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1CNT5_EMIHU) HSP 1 Score: 176 bits (446), Expect = 2.020e-50 Identity = 90/198 (45.45%), Postives = 121/198 (61.11%), Query Frame = 1 Query: 52 FLCDLVAFLHDDVGLPTETLLRRLGFRVMRPGLPVGLDDIKDYVTRERVKKGGCCGVAEMMKFFAYTLTDYHRVVHLDTDTIILQP--LDDLLDEGES-LLYTADINMSNGKTPVMPVQGGFLVIRPDPRVFEDLVQIVKDTPFYPNRGWGRSEIGLFWGGITVQGLLPYYYERRAPPE-VTYRAVDRCVYNNMVDRP 633
++ LVA H V T L +GFRV+ PV + +I+ R+R+ + GCCG E+MK +A++L +Y RV+ LDTD+I+L+P L LL L YT D M P+QGGFL++RP P V +L++IV++ F P GWG S IG FWGG+TVQGLLPYYY RA V+ +DRCV+NNM D P
Sbjct: 68 YVSSLVALTHPTVSNATRAALALVGFRVLERPTPVAIPEIRGSFLRQRIVRSGCCGATELMKLWAWSLVEYDRVLLLDTDSIVLRPIPLGILLRMAPGDLAYTYDYGMGKRGLRTPPIQGGFLLVRPSPSVLAELLEIVREGDFRPGSGWGGSNIGHFWGGVTVQGLLPYYYTVRADRRRVSGMELDRCVFNNMADNP 265
BLAST of mRNA_H-canaliculatus_F_contig10053.89.1 vs. uniprot
Match: A0A836C6W8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C6W8_9STRA) HSP 1 Score: 175 bits (443), Expect = 4.180e-50 Identity = 99/216 (45.83%), Postives = 137/216 (63.43%), Query Frame = 1 Query: 28 DAACATSEFLCDLVAFLHDDVGLPTETLLRRLGFRVMRPGLPVGLDDIKDYVTRERVKK--GGCCGVAEMMKFFAYTLTDYH------RVVHLDTDTIILQPLDDLLDEGESLLYTADINMSNGKTPVMPVQGGFLVIRPDPRVFEDLVQIVKDTPFYPNRGWGRSEIGLFWGGITVQGLLPYYYERRAPPEVTYRAVDRCVYNNMVDRPDCQATD 651
D +CA S++ C VA L +V + +LL G+RV+ GLP+ LD IK + RER+K GCCG E++K +A+TLT+YH RV+H+D D ++LQPLD+ + + L+YT D M++ K MPVQGGFL++RP +F+ LV+IV+ F + GW +S IG FWGG T+QGLL YYY R PE + A D CV NNM+ DC+ D
Sbjct: 60 DLSCAHSDYQCKFVALLDPEVPVQRRSLLTAHGWRVLERGLPLDLDTIKTDL-RERLKTTTAGCCGAKELIKLWAFTLTEYHSADSNNRVIHVDIDAMVLQPLDEWIAKDVDLVYTEDAPMASNKHN-MPVQGGFLLLRPSLEIFQTLVEIVRKGDFTGD-GWNKSGIGWFWGGDTIQGLLAYYY-RAVKPERAFIA-DPCVVNNMLI-DDCRTRD 269
BLAST of mRNA_H-canaliculatus_F_contig10053.89.1 vs. uniprot
Match: A0A7S0SWJ4_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SWJ4_9STRA) HSP 1 Score: 173 bits (439), Expect = 1.570e-49 Identity = 84/196 (42.86%), Postives = 126/196 (64.29%), Query Frame = 1 Query: 46 SEFLCDLVAFLHDDVGLPTETLLRRLGFRVMRPGLPVGLDDIKDYVTRERVKKGGCCGVAEMMKFFAYTLTDYHRVVHLDTDTIILQPLDDLLDEGESLLYTADINMSNGKTPVMPVQGGFLVIRPDPRVFEDLVQIVKDTPFYPNRGWGRSEIGLFWGGITVQGLLPYYYERRAPPEVTYRAVDRCVYNNMVDRP 633
S++ +L+AF+ +V + +L+ G++V+ LPV LD+I++ +R+K GCCG E +K +A+TLT+YHRVVHLD D+++LQ +D+L D + +LYT D M G +PV P QGGFLV+RP F +I++ + GWG + IG FWGG T+QG++PYYY + + ++RCVYN MVD P
Sbjct: 34 SKYDAELIAFVVSNVQT-SRPILQAYGWKVIEKKLPVELDEIENKKYADRMKDSGCCGADEFLKLWAFTLTEYHRVVHLDMDSVVLQNMDELYDIDKEMLYTGDYGMK-GDSPVPPAQGGFLVVRPSLTTFSKFQEIIRKGDHSSSSGWGNTHIGNFWGGTTIQGIIPYYYY--SIDQNNSYELNRCVYNCMVDNP 225
BLAST of mRNA_H-canaliculatus_F_contig10053.89.1 vs. uniprot
Match: A0A7S3NFL9_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NFL9_9STRA) HSP 1 Score: 176 bits (447), Expect = 1.770e-49 Identity = 87/205 (42.44%), Postives = 127/205 (61.95%), Query Frame = 1 Query: 46 SEFLCDLVAFLHDDVGLPTETLLRRLGFRVMRPGLPVGLDDIKDYVTRERVKKGGCCGVAEMMKFFAYTLTDYHRVVHLDTDTIILQPLDDLLDE----GESL--LYTADINMSN---GKTPVMPVQGGFLVIRPDPRVFEDLVQIVKDTPFYPNRGWGRSEIGLFWGGITVQGLLPYYYERRAPPEVTYRAVDRCVYNNMVDRP 633
S++ L+AF+ + T T L G+RV+ LP+ + DI+ R R++K GCCG E++K +A+TLT+YHRVVH+D D +ILQPLD+L D+ G + +YT D M+ G P P QGGF++ +PD VF LV +V+ F +GWG + +G +WGG+T+QGL+PY++E+ P AVD C+YNNM P
Sbjct: 103 SKYGVALIAFVSPAISKKTRTALEACGYRVLERDLPLRIADIQGEYLRNRIEKNGCCGAWELLKLYAWTLTEYHRVVHVDMDVLILQPLDELYDDLKIWGPQVRAVYTYDWTMARPPWGTNP--PTQGGFIIAKPDIEVFNSLVDVVRKGDFQGGKGWGGTGVGAYWGGMTIQGLVPYFFEKLRPGSGF--AVDECIYNNMATNP 303
BLAST of mRNA_H-canaliculatus_F_contig10053.89.1 vs. uniprot
Match: A0A482SAB1_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SAB1_9ARCH) HSP 1 Score: 174 bits (442), Expect = 2.480e-49 Identity = 92/205 (44.88%), Postives = 125/205 (60.98%), Query Frame = 1 Query: 19 HHPDAACATSEFLCDLVAFLHDDVGLPTETLLRRLGFRVMRPGLPVGLDDIKDYVTRERVKKGGCCGVAEMMKFFAYTLTDYHRVVHLDTDTIILQPLDDLLDEGESLLYTADINMSNGKTPVMPVQGGFLVIRPDPRVFEDLVQIVKDTPFYPNRGWGRSEIGLFWGGITVQGLLPYYYERRAPPEVTYRAVDRCVYNNMVDRP 633
+H A S+F DL+AF+ V T T+LR+ G++++ LPV L +I++ +R+K GCCG E +K +AYTLT Y RV+HLD D II + LD L+ + LLYT D NM G +PV P QGGFLVIRP F++ I++ P +GWG S IG FWGG T+QG++PY+Y ++RC YNNMVD P
Sbjct: 83 YHSAAKGFPSDFNIDLIAFVTKKVKT-TRTVLRKFGWKILEKDLPVALSEIQNKDYADRMKDSGCCGADEFLKLWAYTLTQYERVIHLDMDCIIFKNLDKLVRIDKELLYTGDYNMKGG-SPVAPAQGGFLVIRPSLERFKEFQAIIRKGDHGP-QGWGGSHIGNFWGGQTIQGIMPYFYH--VIHNGDGEELNRCEYNNMVDNP 282
BLAST of mRNA_H-canaliculatus_F_contig10053.89.1 vs. uniprot
Match: A0A835Z761_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z761_9STRA) HSP 1 Score: 172 bits (437), Expect = 8.070e-48 Identity = 92/243 (37.86%), Postives = 132/243 (54.32%), Query Frame = 1 Query: 28 DAACATSEFLCDLVAFLHDDVGLPTETLLRRLGFRVMRPGLPVGLDDIKDYVTRERVKKGGCCGVAEMMKFFAYTLTDYHRVVHLDTDTIILQPLDDLLDEGESLLYTADINMSNGKTPVMPVQGGFLVIRPDPRVFEDLVQIVKDTPFYPNRGWGRSEIGLFWGGITVQGLLPYYYE-------RRAPPEVTYRA------------------------VDRCVYNNMVDRPDCQATDLSRV 663
D+ C S++ C VAF+ V L LG+RV+ G+P+ + I+ R R+ K GCCG +E++K +A++LT+Y+RV+HLD D ++LQP+D+L+ L+YT D+ M+ MPVQGGFL+ RP F++LV IVK + PN GW RS IG F GG T+QGLL YYY R PP + DRC +N+M D P+C++ + V
Sbjct: 110 DSVCRRSKYDCAKVAFVDPSVRAERRGPLSALGWRVLERGVPLDIAQIEGEKLRNRIDKSGCCGASELIKLWAFSLTEYYRVLHLDVDALMLQPVDELIARDVELVYTTDVKMAPNAHN-MPVQGGFLLCRPSQATFDELVGIVKKGDWAPNVGWARSGIGFFHGGPTIQGLLAYYYRHDRTLPNRALPPPLLLSPPXXPLQXXXXXXXRFLKPTELSYEADRCAFNHMWDTPECRSYAIGDV 351 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10053.89.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig10053.89.1 >prot_H-canaliculatus_F_contig10053.89.1 ID=prot_H-canaliculatus_F_contig10053.89.1|Name=mRNA_H-canaliculatus_F_contig10053.89.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=222bp MATRGSHHPDAACATSEFLCDLVAFLHDDVGLPTETLLRRLGFRVMRPGLback to top mRNA from alignment at H-canaliculatus_F_contig10053:142..4657+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig10053.89.1 ID=mRNA_H-canaliculatus_F_contig10053.89.1|Name=mRNA_H-canaliculatus_F_contig10053.89.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=4516bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10053:142..4657+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10053:142..4657+ >mRNA_H-canaliculatus_F_contig10053.89.1 ID=mRNA_H-canaliculatus_F_contig10053.89.1|Name=mRNA_H-canaliculatus_F_contig10053.89.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1332bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10053:142..4657+ (Hapterophycus canaliculatus Oshoro5f female)back to top |