mRNA_H-canaliculatus_F_contig10051.86.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig10051.86.1 vs. uniprot
Match: D8LES5_ECTSI (UVR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LES5_ECTSI) HSP 1 Score: 347 bits (891), Expect = 5.810e-113 Identity = 180/198 (90.91%), Postives = 190/198 (95.96%), Query Frame = 1 Query: 52 RREATLTEREGFAVAKKVLPEGGEGLEMDLEALRAMRSEVNKLKRSMRRAVEEEDYKTAGELRNQMSAIRAKDPLYVVSDLLGVAISKEKFKRAARLRDAKDWILRESRGSVFEVDRLVCLGNKASNIITTDPEGATVRRFLRKDQVQEITRTGQIQLPVWSPDGKMVAFSVLKAGSGGAPIESARILVYRESGSLVV 645
RREA LTEREGFA+ KKVLP GGEGLEMDLE LR MRS VNK+KRSMRRAVEEEDYKTAG+LRN+M+AIRAKDPLYVVSDLLGVA+SKEKFKRAARLRDAKDWILRESRGSVFEVDRLVCLG+KASNIITTDPEGATVRRFLR DQV EI+RTGQIQLPVWSPDGKMVAFSVLKAGSGGAPIESA+ILVYRESGSLV+
Sbjct: 177 RREAPLTEREGFAMVKKVLPGGGEGLEMDLEGLRDMRSNVNKIKRSMRRAVEEEDYKTAGDLRNEMAAIRAKDPLYVVSDLLGVAVSKEKFKRAARLRDAKDWILRESRGSVFEVDRLVCLGDKASNIITTDPEGATVRRFLRNDQVAEISRTGQIQLPVWSPDGKMVAFSVLKAGSGGAPIESAKILVYRESGSLVL 374
BLAST of mRNA_H-canaliculatus_F_contig10051.86.1 vs. uniprot
Match: A0A7S3XSM8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XSM8_HETAK) HSP 1 Score: 75.1 bits (183), Expect = 3.910e-12 Identity = 33/78 (42.31%), Postives = 54/78 (69.23%), Query Frame = 1 Query: 394 VDRLVCLGNKASNIITTDPEGATVRRFLRKDQVQEITRTGQIQLPVWSPDGKMVAFSVLKAGSGGAPIESARILVYRE 627
VDRL + + S+I+T +G+ VR+ L + ++QE+TR+GQ+Q P WSPDG+ +AF+ ++ G G I AR+++Y E
Sbjct: 4 VDRLCVMAAQGSSIVTCKRDGSGVRKLLPRTELQELTRSGQLQQPTWSPDGQKIAFTAMRIGEG--KIAEARLVIYNE 79
BLAST of mRNA_H-canaliculatus_F_contig10051.86.1 vs. uniprot
Match: A0A6H5KNT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNT6_9PHAE) HSP 1 Score: 67.8 bits (164), Expect = 2.900e-10 Identity = 35/42 (83.33%), Postives = 35/42 (83.33%), Query Frame = 1 Query: 52 RREATLTEREGFAVAKKVLPEGGEGLEMDLEALRAMRSEVNK 177
RRE LTEREGFAV KKVLP GGEGLEMDLE LR MRS VNK
Sbjct: 166 RREVPLTEREGFAVVKKVLPGGGEGLEMDLEGLRNMRSNVNK 207 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10051.86.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 3 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig10051.86.1 >prot_H-canaliculatus_F_contig10051.86.1 ID=prot_H-canaliculatus_F_contig10051.86.1|Name=mRNA_H-canaliculatus_F_contig10051.86.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=225bp GGGGGGGGAGAGGGTRARREATLTEREGFAVAKKVLPEGGEGLEMDLEALback to top mRNA from alignment at H-canaliculatus_F_contig10051:46..4604+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig10051.86.1 ID=mRNA_H-canaliculatus_F_contig10051.86.1|Name=mRNA_H-canaliculatus_F_contig10051.86.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=4559bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10051:46..4604+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10051:46..4604+ >mRNA_H-canaliculatus_F_contig10051.86.1 ID=mRNA_H-canaliculatus_F_contig10051.86.1|Name=mRNA_H-canaliculatus_F_contig10051.86.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1350bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10051:46..4604+ (Hapterophycus canaliculatus Oshoro5f female)back to top |