mRNA_H-canaliculatus_F_contig10048.81.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig10048.81.1 vs. uniprot
Match: D7G3I4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3I4_ECTSI) HSP 1 Score: 356 bits (914), Expect = 3.510e-107 Identity = 232/436 (53.21%), Postives = 262/436 (60.09%), Query Frame = 1 Query: 1 SFSGLGSTSDVRARDLKKIHLDEALNVTSHRVGNVKELASSFRGESRPENVEVFHKRHKEQEAEYRHKVHQGKETLKKTSQGTDAMYNFVLKLNLATTEGKARFMKKWAIGRIANGETVSPREGWKFLQSLGIGVQKVSPSPAASASANPVSPAGDDAAEIRSAAKPAAAXXXXXXXXXXXXXXXXXXXXXXXXXXAAPFVRGRGRTRNLPAARAG----------------PKGESAAWEVAMSQAVGAVVRVDPDACAPKLAFHRRRRSGSEPRKTPNEVPRAPETCRAPKSKSFFFSNSSSSSETVNVKESAQQQP-----NADPRARRSSFNNIGSGSKGGGFGFLEEDEGELDDFVRDLSVSPAGSC--------------------LLGQRPQSQAFGARGPSLDSFRASVSSSRMSLSPAGPPDLSPER 1185
++S STSDVRARDLKK HLDEA N+TS+R VK++AS F+GESRPENVEVFHKRHKEQEA+YRHKVHQGKETLKKTSQGTDAMYNFVLKLNLATTEGK RFMKKWAIGRIANGE+++PREGWKFL+SLGI V K AA+ A P SP+ D +SA A RGRGRT N PA G K ESAAWEVAMSQAVGAVV+VD DACAPKL RRRRSGSEPR+TP+++PRAP+TCRAPK+K FF V + P N D + ++ G G G G LS+SPAGS + G+RPQSQAF +RGPSLDS RASVSSSRMSLSP LSP R
Sbjct: 184 NYSVFSSTSDVRARDLKKTHLDEARNLTSNRARKVKDIASGFKGESRPENVEVFHKRHKEQEADYRHKVHQGKETLKKTSQGTDAMYNFVLKLNLATTEGKERFMKKWAIGRIANGESINPREGWKFLKSLGIDVPKPRSPNAATDFARPGSPSEKDITTAQSAPNKQTTTGMITP---------------------AAASRGRGRTGNTPATAGGYGRPGGGGGGFAVGDAAKQESAAWEVAMSQAVGAVVKVDADACAPKLGLERRRRSGSEPRRTPSDLPRAPDTCRAPKTKPFFXXXXXXXXSDVKAAPPSPLPPAPMSDNGDCLLEQDEADDFGDGGSRGFSG-------------AGLSLSPAGSVTGGLALNMKLWRQEGEGGDGVGGRRPQSQAFDSRGPSLDSLRASVSSSRMSLSPCR--SLSPPR 583
BLAST of mRNA_H-canaliculatus_F_contig10048.81.1 vs. uniprot
Match: A0A6H5KR12_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR12_9PHAE) HSP 1 Score: 337 bits (863), Expect = 2.540e-100 Identity = 235/473 (49.68%), Postives = 266/473 (56.24%), Query Frame = 1 Query: 1 SFSGLGSTSDVRARDLKKIHLDEALNVTSHRVGNVKELASSFRGESR---------------------------------PENVEVFHKRHKEQEAEYRHKVHQGKETLKKTSQGTDAMYNFVLKLNLATTEGKARFMKKWAIGRIANGETVSPREGWKFLQSLGIGVQKVSPSPAASASANPVSPAGDDAAEIRSAAKPAAAXXXXXXXXXXXXXXXXXXXXXXXXXXAAPFVRGRGRTRNLPAARAG----------------PKGESAAWEVAMSQAVGAVVRVDPDACAPKLAFHRRRRSGSEPRKTPNEVPRAPETCRAPKSKSFFFSNSSSSSETVNVKESAQQQPNADPRARRSSFNNIGSGSKGGGFGFLEEDEGELDDFV---------RDLSVSPAGSC--------------------LLGQRPQSQAFGARGPSLDSFRASVSSSRMSLSPAGPPDLSPER 1185
++S S SDVRARDLKK HLDEA N+TS+R VK++AS F+GESR PENVEVFHKRHKEQEA+YRHKVHQGKETLKKTSQGTDAMYNFVLKLNLATTEGK RFMKKWAIGRIANGE+++PREGWKFL+SLGI V K AA+ A+P SP+ D+ +S A RGRGRT N PA G K ESAAWEVAMSQAVGA+V+VD DACAPKL RRRRSGSEPR+TP+ +PRAP+TCRAPK+KSF ++A P P A S G LEEDE DDF LS+SPAGS + G+RPQSQAFG+RGPSLDS RAS+SSSRMSLSP LSP R
Sbjct: 225 NYSVFSSNSDVRARDLKKTHLDEARNLTSNRARKVKDIASGFKGESRQATAVNTSTAGCHTSEPRTPVPDPGRNQLLFSEPENVEVFHKRHKEQEADYRHKVHQGKETLKKTSQGTDAMYNFVLKLNLATTEGKERFMKKWAIGRIANGESINPREGWKFLKSLGIDVPKPRSPNAAADFASPGSPSEKDSTTAQSGTTKQTTTGMTTP---------------------AAASRGRGRTGNTPATAGGYGRPGGGGGGFAVGDAAKQESAAWEVAMSQAVGALVKVDADACAPKLGLERRRRSGSEPRRTPSNLPRAPDTCRAPKTKSFXXXXXXXXXXXXXDVKAAPPSPL--PPAPMSD----------NGDRLLEEDE--ADDFGDGGSRGFSGAGLSLSPAGSVTGGLALNMKLWRQEGEGGDGVGGRRPQSQAFGSRGPSLDSLRASISSSRMSLSPCR--SLSPPR 660 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10048.81.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig10048.81.1 >prot_H-canaliculatus_F_contig10048.81.1 ID=prot_H-canaliculatus_F_contig10048.81.1|Name=mRNA_H-canaliculatus_F_contig10048.81.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=397bp SFSGLGSTSDVRARDLKKIHLDEALNVTSHRVGNVKELASSFRGESRPENback to top mRNA from alignment at H-canaliculatus_F_contig10048:281..4774+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig10048.81.1 ID=mRNA_H-canaliculatus_F_contig10048.81.1|Name=mRNA_H-canaliculatus_F_contig10048.81.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=4494bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10048:281..4774+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10048:281..4774+ >mRNA_H-canaliculatus_F_contig10048.81.1 ID=mRNA_H-canaliculatus_F_contig10048.81.1|Name=mRNA_H-canaliculatus_F_contig10048.81.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2382bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10048:281..4774+ (Hapterophycus canaliculatus Oshoro5f female)back to top |