mRNA_H-canaliculatus_F_contig10046.80.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig10046.80.1 vs. uniprot
Match: D8LGI7_ECTSI (TIP120 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGI7_ECTSI) HSP 1 Score: 164 bits (415), Expect = 2.760e-43 Identity = 76/83 (91.57%), Postives = 80/83 (96.39%), Query Frame = 3 Query: 354 YLPGILDAFEKSVKHQYLLLSSLKEVIVCHATTPGLDFSPFVDQVLPHLFQHCTSDEEGVRNMVAECLGALTSMHPQKLVPEL 602
YLPGILDAFE+SVKHQYLLLSSLKEVIVCHA TPGL+F P+VDQVLPHLFQHCTSDEEGVRNMVAECLG LTSMHPQ+LVPEL
Sbjct: 835 YLPGILDAFERSVKHQYLLLSSLKEVIVCHANTPGLEFGPYVDQVLPHLFQHCTSDEEGVRNMVAECLGVLTSMHPQRLVPEL 917
BLAST of mRNA_H-canaliculatus_F_contig10046.80.1 vs. uniprot
Match: A0A836CDP2_9STRA (Armadillo-type protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDP2_9STRA) HSP 1 Score: 120 bits (300), Expect = 5.780e-28 Identity = 61/84 (72.62%), Postives = 67/84 (79.76%), Query Frame = 3 Query: 354 YLPGILDAFEKSVKHQYLLLSSLKEVIVCHATT-PGLDFSPFVDQVLPHLFQHCTSDEEGVRNMVAECLGALTSMHPQKLVPEL 602
YLP +LDA E S +HQYLLLSSLKEVIVCHA P LDFS +DQVLPHLF HC S EEGVRNMVA CLGAL +MHP ++VP L
Sbjct: 261 YLPVVLDALE-STRHQYLLLSSLKEVIVCHARARPPLDFSAALDQVLPHLFGHCQSPEEGVRNMVAACLGALATMHPDRVVPAL 343
BLAST of mRNA_H-canaliculatus_F_contig10046.80.1 vs. uniprot
Match: A0A7S2CRP2_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CRP2_9STRA) HSP 1 Score: 115 bits (289), Expect = 5.200e-27 Identity = 54/83 (65.06%), Postives = 67/83 (80.72%), Query Frame = 3 Query: 354 YLPGILDAFEKSVKHQYLLLSSLKEVIVCHATTPGLDFSPFVDQVLPHLFQHCTSDEEGVRNMVAECLGALTSMHPQKLVPEL 602
YLP IL++ + +H YLLLS+LKEVI+ HA T GLDF P+++QVLPHL +HC S EEGVRNMVAECLGAL +MHP+ +VP L
Sbjct: 100 YLPVILESLNAN-RHHYLLLSALKEVILLHANTTGLDFGPYIEQVLPHLLKHCESAEEGVRNMVAECLGALITMHPEVIVPAL 181
BLAST of mRNA_H-canaliculatus_F_contig10046.80.1 vs. uniprot
Match: A0A7S2UZY3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZY3_9STRA) HSP 1 Score: 106 bits (264), Expect = 2.380e-25 Identity = 50/70 (71.43%), Postives = 60/70 (85.71%), Query Frame = 3 Query: 393 KHQYLLLSSLKEVIVCHATTPGLDFSPFVDQVLPHLFQHCTSDEEGVRNMVAECLGALTSMHPQKLVPEL 602
+ QYLLL++LKEVI+ HA T GLDFS +V+ VLPHL++HC S EEGVRNMVAECLGALTSMHP++LV L
Sbjct: 5 RQQYLLLAALKEVIMYHACTAGLDFSLYVEMVLPHLYRHCESPEEGVRNMVAECLGALTSMHPEQLVSGL 74
BLAST of mRNA_H-canaliculatus_F_contig10046.80.1 vs. uniprot
Match: A0A7S2FNG9_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FNG9_9STRA) HSP 1 Score: 95.9 bits (237), Expect = 1.970e-19 Identity = 50/82 (60.98%), Postives = 60/82 (73.17%), Query Frame = 3 Query: 357 LPGILDAFEKSVKHQYLLLSSLKEVIVCHATTPGLDFSPFVDQVLPHLFQHCTSDEEGVRNMVAECLGALTSMHPQKLVPEL 602
LP IL +S +H YLLLS+LKEV+V HATT DF ++DQV+PHL +H S EEGVRNMVAECLGAL +MH +VP L
Sbjct: 897 LPLILTYMARS-RHHYLLLSALKEVLVLHATT-SQDFGSYIDQVIPHLLKHGQSPEEGVRNMVAECLGALITMHADSIVPML 976
BLAST of mRNA_H-canaliculatus_F_contig10046.80.1 vs. uniprot
Match: A0A7R9VF31_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VF31_9STRA) HSP 1 Score: 92.8 bits (229), Expect = 1.940e-18 Identity = 46/90 (51.11%), Postives = 61/90 (67.78%), Query Frame = 3 Query: 354 YLPGILDAFEKS-VKHQYLLLSSLKEVIVCHAT------TPGLDFSPFVDQVLPHLFQHCTSDEEGVRNMVAECLGALTSMHPQKLVPEL 602
+LP ILDA E++ K QYLLLS+L+E+I CH D SP + +LPHLF+HC +EEGVR MVAECLG+LT + P ++P+L
Sbjct: 221 FLPAILDALEENREKKQYLLLSALRELIHCHQLGGXXXXXSAADISPSIPLILPHLFKHCADEEEGVRTMVAECLGSLTCLQPAVILPQL 310
BLAST of mRNA_H-canaliculatus_F_contig10046.80.1 vs. uniprot
Match: A0A7S3V7P0_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V7P0_9STRA) HSP 1 Score: 92.4 bits (228), Expect = 3.180e-18 Identity = 45/84 (53.57%), Postives = 58/84 (69.05%), Query Frame = 3 Query: 354 YLPGILDAFEKSVKH-QYLLLSSLKEVIVCHATTPGLDFSPFVDQVLPHLFQHCTSDEEGVRNMVAECLGALTSMHPQKLVPEL 602
+LP ILDA EK+ K+ QYLLL++L+E+I CH G D SP + Q+LPHL H EEGVR MVA+CLG L + P ++PEL
Sbjct: 1089 FLPNILDALEKNDKNKQYLLLAALRELIYCHQQGFGGDISPSIQQILPHLKTHLADKEEGVRTMVADCLGCLACLEPDVILPEL 1172
BLAST of mRNA_H-canaliculatus_F_contig10046.80.1 vs. uniprot
Match: A0A7S2QZD8_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2QZD8_9STRA) HSP 1 Score: 88.6 bits (218), Expect = 3.480e-17 Identity = 44/84 (52.38%), Postives = 55/84 (65.48%), Query Frame = 3 Query: 354 YLPGILDAFE-KSVKHQYLLLSSLKEVIVCHATTPGLDFSPFVDQVLPHLFQHCTSDEEGVRNMVAECLGALTSMHPQKLVPEL 602
+LP IL A E KS K QYLLLS+L+E+I CH G D + + +LPHL HC EEGVR MVAECLG+L + P ++P L
Sbjct: 53 FLPAILGALEDKSQKDQYLLLSALRELIHCHQLGGGSDIAASIPLILPHLITHCGDKEEGVRTMVAECLGSLVCLQPDVVLPSL 136
BLAST of mRNA_H-canaliculatus_F_contig10046.80.1 vs. uniprot
Match: A0A7S2N4P0_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2N4P0_9STRA) HSP 1 Score: 89.0 bits (219), Expect = 4.300e-17 Identity = 46/87 (52.87%), Postives = 59/87 (67.82%), Query Frame = 3 Query: 354 YLPGILDAFEK-SVKHQYLLLSSLKEVIVCHATTPGL---DFSPFVDQVLPHLFQHCTSDEEGVRNMVAECLGALTSMHPQKLVPEL 602
+LP ILDA E+ S K QYLLLS+L+E+I C+ T G D S V +LPHL HC+ EEGVR MVAEC+G+LT + P ++P L
Sbjct: 243 FLPAILDALEQNSQKKQYLLLSALRELIHCYQTGGGAGGGDISSSVPLILPHLVNHCSDKEEGVRTMVAECMGSLTCLEPDVMLPRL 329
BLAST of mRNA_H-canaliculatus_F_contig10046.80.1 vs. uniprot
Match: A0A0K9RK16_SPIOL (TIP120 domain-containing protein n=5 Tax=Chenopodiaceae TaxID=1804623 RepID=A0A0K9RK16_SPIOL) HSP 1 Score: 87.8 bits (216), Expect = 1.240e-16 Identity = 46/84 (54.76%), Postives = 56/84 (66.67%), Query Frame = 3 Query: 351 RYLPGILDAFEKSVKHQYLLLSSLKEVIVCHATTPGLDFSPFVDQVLPHLFQHCTSDEEGVRNMVAECLGALTSMHPQKLVPEL 602
+YLP ILD + K QYLLL SLKEVIV +T + VD++L LF HC S+EEGVRN+VAECLG + + P KLVP L
Sbjct: 886 KYLPFILDQIDHQQKKQYLLLHSLKEVIVRQSTDKAEFQASSVDKILNLLFNHCESEEEGVRNVVAECLGKVALIEPTKLVPAL 969 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10046.80.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig10046.80.1 >prot_H-canaliculatus_F_contig10046.80.1 ID=prot_H-canaliculatus_F_contig10046.80.1|Name=mRNA_H-canaliculatus_F_contig10046.80.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=121bp MLIVLVLLSLLLPSKLSLFPSAAVLSFTLLLLLFGTRRYLPGILDAFEKSback to top mRNA from alignment at H-canaliculatus_F_contig10046:3574..4870+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig10046.80.1 ID=mRNA_H-canaliculatus_F_contig10046.80.1|Name=mRNA_H-canaliculatus_F_contig10046.80.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1297bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10046:3574..4870+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10046:3574..4870+ >mRNA_H-canaliculatus_F_contig10046.80.1 ID=mRNA_H-canaliculatus_F_contig10046.80.1|Name=mRNA_H-canaliculatus_F_contig10046.80.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=726bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10046:3574..4870+ (Hapterophycus canaliculatus Oshoro5f female)back to top |