mRNA_H-canaliculatus_F_contig10045.77.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig10045.77.1 vs. uniprot
Match: D8LH66_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH66_ECTSI) HSP 1 Score: 263 bits (673), Expect = 1.150e-86 Identity = 141/162 (87.04%), Postives = 144/162 (88.89%), Query Frame = 1 Query: 1 MPSTLSKASGSADPTIATTDIHRGCGDTNQTPLMVASVIGSSRVVRDLLRQGASVSVADSDGCTALHHSVHHKHLGVSKDLIEAGADLEARPGGVYGTPLHVTATKGFCQGMVMLIDAGANVDSRLDDGATPLFFAASDGRLEAVRVLLRANANPLLSACGS 486 MPSTLSKASGS DPTIATT I RGCGDTNQTPLMVASVIGSSRVVRDLLRQGASVSVADSDGCTALHHSV+H HL VSKDLIEAGADLEAR GG TPLHV ATKGFCQGM +L+D SRLDDGATPLF AASDGRLEAVRVLLRANANPLLSACGS Sbjct: 1 MPSTLSKASGSIDPTIATTGIDRGCGDTNQTPLMVASVIGSSRVVRDLLRQGASVSVADSDGCTALHHSVYHNHLAVSKDLIEAGADLEARHGG-KDTPLHVAATKGFCQGMKLLMD------SRLDDGATPLFLAASDGRLEAVRVLLRANANPLLSACGS 155
BLAST of mRNA_H-canaliculatus_F_contig10045.77.1 vs. uniprot
Match: A0A6H5K1W5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1W5_9PHAE) HSP 1 Score: 222 bits (565), Expect = 3.540e-64 Identity = 141/210 (67.14%), Postives = 147/210 (70.00%), Query Frame = 1 Query: 25 SGSADPTIATTDIHRGCGDTNQTPLMVASVIGSSRVVRDLLRQGASVSVADSDGCTALHHSVHHKHLGVSKDLIEAGADLEARPGGVYGTPLHVTATKGFCQGMVMLIDAGANVDSRLDDGATPLFFAASDGRLEAVRVLLRANANPLLSACGSXXXXXXXXXXXXXXXXELVYWYGIDRCTSDGGGLALVAAASRKHVDIVTFLCDAGV 654 SGS + IATTDI R CGDTNQTPLMVASVIGSSRVVRDLLRQGASVS+ADSDG ALHH+V+HKHL VSKDLIEAGADL+ARPGG+ TPLHV ATKGFCQ M NPLLSA XXXXXXXXXXXXXXXXELVYWYG D CTSDGG LAL AASR VDIVTFLCDAGV Sbjct: 399 SGSVERPIATTDIDRRCGDTNQTPLMVASVIGSSRVVRDLLRQGASVSLADSDGYPALHHAVYHKHLAVSKDLIEAGADLDARPGGI-DTPLHVAATKGFCQEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPLLSADXXXXXXXXXXXXXXXXXXELVYWYGTDGCTSDGGALALATAASRNQVDIVTFLCDAGV 607
BLAST of mRNA_H-canaliculatus_F_contig10045.77.1 vs. uniprot
Match: A0A6H5JHQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHQ8_9PHAE) HSP 1 Score: 214 bits (545), Expect = 5.050e-64 Identity = 125/218 (57.34%), Postives = 132/218 (60.55%), Query Frame = 1 Query: 1 MPSTLSKASGSADPTIATTDIHRGCGDTNQTPLMVASVIGSSRVVRDLLRQGASVSVADSDGCTALHHSVHHKHLGVSKDLIEAGADLEARPGGVYGTPLHVTATKGFCQGMVMLIDAGANVDSRLDDGATPLFFAASDGRLEAVRVLLRANANPLLSACGSXXXXXXXXXXXXXXXXELVYWYGIDRCTSDGGGLALVAAASRKHVDIVTFLCDAGV 654 MPSTLSKASGS + +ATTDI R CGDTN TPLMVASVIGSSRVV+DLLRQGASVSVADSDG TALHHSV+H+HL VS LIEAGADLEARPG LRANANPLLSA GS ELV+WYG DRCT+DGG LAL AASRKHVDIVTFLCDAGV Sbjct: 1 MPSTLSKASGSVERAVATTDIDRRCGDTNHTPLMVASVIGSSRVVKDLLRQGASVSVADSDGYTALHHSVYHRHLAVSISLIEAGADLEARPGXXXXXXXXXXXXXXXXX-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRANANPLLSAYGSLPLGTAVYNGHLKVVSELVHWYGTDRCTNDGGVLALATAASRKHVDIVTFLCDAGV 217
BLAST of mRNA_H-canaliculatus_F_contig10045.77.1 vs. uniprot
Match: A0A6H5JL58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL58_9PHAE) HSP 1 Score: 191 bits (484), Expect = 1.250e-52 Identity = 116/218 (53.21%), Postives = 120/218 (55.05%), Query Frame = 1 Query: 1 MPSTLSKASGSADPTIATTDIHRGCGDTNQTPLMVASVIGSSRVVRDLLRQGASVSVADSDGCTALHHSVHHKHLGVSKDLIEAGADLEARPGGVYGTPLHVTATKGFCQGMVMLIDAGANVDSRLDDGATPLFFAASDGRLEAVRVLLRANANPLLSACGSXXXXXXXXXXXXXXXXELVYWYGIDRCTSDGGGLALVAAASRKHVDIVTFLCDAGV 654 MPSTLSKASGSADPTIATTDI R CG TNQTPLMVASVIGSSRVVRDLLRQGASVSVADSDG TALHH+V+HKHL VSK ANANPLLSA GS ELV+WYG DRCTSDGG LAL AASRKHVDIV FLC+AGV Sbjct: 422 MPSTLSKASGSADPTIATTDIDRRCGGTNQTPLMVASVIGSSRVVRDLLRQGASVSVADSDGYTALHHAVYHKHLAVSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANANPLLSAYGSLPLGMAVYHGHLEVVRELVHWYGTDRCTSDGGALALATAASRKHVDIVAFLCNAGV 638
BLAST of mRNA_H-canaliculatus_F_contig10045.77.1 vs. uniprot
Match: A0A6H5L5L0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5L0_9PHAE) HSP 1 Score: 177 bits (449), Expect = 1.390e-49 Identity = 124/219 (56.62%), Postives = 126/219 (57.53%), Query Frame = 1 Query: 1 MPSTLSKASGSADPTIATTDIHRGCGDTNQTPLMVASVIGSSRVVRDLLRQGASVSVADSDGCTALHHSVHHKHLGVSKDLIEAGADLEARPGGVYGTPLHVTATKGFCQGMVMLIDAGANVDSRLDDGATPLFFAASDGRLEAVRVLLRANANPLLSACGSXXXXXXXXXXXXXXXX-ELVYWYGIDRCTSDGGGLALVAAASRKHVDIVTFLCDAGV 654 MPSTLSKASGSADPTIATTDI R CGDTNQTPLMVASVIG SRVVRDLLRQGASVSVADSDG TALHH+V+HKHL VSK LSA GS XXXXXXXXXX ELVYWYGIDRCTSDGG LALV AASRKHVDIVTFL DAGV Sbjct: 7 MPSTLSKASGSADPTIATTDIDRRCGDTNQTPLMVASVIGPSRVVRDLLRQGASVSVADSDGYTALHHAVYHKHLAVSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSAYGSLPLYIMXXXXXXXXXXRELVYWYGIDRCTSDGGALALVTAASRKHVDIVTFLRDAGV 224
BLAST of mRNA_H-canaliculatus_F_contig10045.77.1 vs. uniprot
Match: A0A6H5KSL5_9PHAE (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A6H5KSL5_9PHAE) HSP 1 Score: 159 bits (402), Expect = 3.350e-43 Identity = 95/208 (45.67%), Postives = 123/208 (59.13%), Query Frame = 1 Query: 55 TDIHRGCGDTNQTPLMVASVIGSSRVVRDLLRQGASVSVADSDGCTALHHSVHHKHLGVSKDLIEAGADLEARPGGVY--------GTPLHVTATKGFCQGMVMLIDAGANVDSRLDDGATPLFFAASDGRLEAVRVLLRANANPLLSACGSXXXXXXXXXXXXXXXXELVYWYGIDRCTSDGGGLALVAAASRKHVDIVTFLCDAGV 654 T+I R C + T LM A+ G R+VR LLR GA VSV+ DG TALH ++ ++L V+K LI+AGA++EA+ V TPLH+ A +GFC+GMV LI+AGANVDSR+ DG+T ++ AA G LEAV +L + ANPLL + ELV +GID C +G AL AA H I+TFL DAGV Sbjct: 42 TEIDRRCDEHGVTALMCAANKGYLRIVRVLLRFGADVSVSTDDGHTALHFAIGGRNLAVTKALIKAGAEVEAKADLVRMESEVVQGQTPLHLAAGEGFCEGMVALINAGANVDSRMSDGSTAMYIAACLGNLEAVEILFQKKANPLLRVGPTHPLDIATHGGHLGVVQELVQRFGIDGCADEGAIGALETAAYENHEAIMTFLLDAGV 249
BLAST of mRNA_H-canaliculatus_F_contig10045.77.1 vs. uniprot
Match: A0A6H5JNS0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNS0_9PHAE) HSP 1 Score: 134 bits (337), Expect = 7.400e-34 Identity = 92/198 (46.46%), Postives = 107/198 (54.04%), Query Frame = 1 Query: 103 VASVIGSSRVVRDLLRQGASVSVADSDGCTALHHSVHHKHLGVSKDLIEAGADLEARPG-----GVYGTPLHVTATKGFCQGMVMLIDAGAN---------VDSRLDDGATPLFFAASDGRLEAVRVLLRANANPLLSACGSXXXXXXXXXXXXXXXXELVYWYGIDRCTSDGGGLALVAAASRKHVDIVTFLCDAGV 654 VAS +G RVVR LLR GA VS AD+DG TALH S+ +KHL VSK L++AGADLEAR GV TPLHV A KGF +GMVMLI AG + + D + PL AA +G+L VR EL +GID C+ DGG ALV AAS+ VDIVTFL D GV Sbjct: 37 VASTMGYLRVVRVLLRLGARVSAADNDGATALHLSIVNKHLAVSKALVKAGADLEARIDHHQALGVGCTPLHVAAAKGFHKGMVMLIHAGVKGFVGAKANPILAAYDGESLPLDVAAENGQLGVVR--------------------------------ELEQRFGIDGCSCDGGAQALVEAASQNQVDIVTFLFDNGV 202
BLAST of mRNA_H-canaliculatus_F_contig10045.77.1 vs. uniprot
Match: D8LP44_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP44_ECTSI) HSP 1 Score: 123 bits (308), Expect = 1.400e-29 Identity = 80/214 (37.38%), Postives = 106/214 (49.53%), Query Frame = 1 Query: 55 TDIHRGCGDTNQTPLMVASVIGSSRVVRDLLRQGASVSVADSDG-------------CTALHHSVHHKHLGVSKDLIEAGADLEARPGGVYG-TPLHVTATKGFCQGMVMLIDAGANVDSRLDDGATPLFFAASDGRLEAVRVLLRANANPLLSACGSXXXXXXXXXXXXXXXXELVYWYGIDRCTSDGGGLALVAAASRKHVDIVTFLCDAGV 654 T+I R C + T LM A+ G R+VR LLR GA VSV+ DG D + ++ V G TPLH+ +GFC GMV LIDAGANVDSR+ +G+T ++ AA G L+AV++LL+ ANP+L + ELV +G+D C+ +G AL AA H I+TFL DAGV Sbjct: 29 TEIDRRCEENGVTALMCAANKGYLRIVRVLLRFGADVSVSTDDGHXXXXXXXXXXXXXXXXXXXXXXXXXXXKADFLHPDQEV------VQGQTPLHLATGEGFCDGMVALIDAGANVDSRMSNGSTAMYIAACTGNLDAVKILLQERANPMLCVGPTHPLDIATHGGHLGVVQELVQRFGVDGCSDEGAIGALETAAYENHQTILTFLLDAGV 236
BLAST of mRNA_H-canaliculatus_F_contig10045.77.1 vs. uniprot
Match: D7FXY7_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXY7_ECTSI) HSP 1 Score: 94.4 bits (233), Expect = 2.310e-19 Identity = 60/145 (41.38%), Postives = 77/145 (53.10%), Query Frame = 1 Query: 241 LIEAGADLEARPGGVYGTPLHVTATKGFCQGMVMLIDAGANVDSRLDDGATPLFFAASDGRLEAVRVLLRANANPLL------SACGSXXXXXXXXXXXXXXXXELVYWYGIDRCTSDGGGL-ALVAAASRKHVDIVTFLCDAGV 654 L+EAGA LE TPL + A G M L++AGAN++SR DGATPLF AA +G ++AVR+LL A +PLL S S EL+ GI C GG+ AL AA KH+D++T L +AGV Sbjct: 2 LVEAGAPLEVATKQQLCTPLQIAAVNGCAASMTTLLEAGANLNSRRFDGATPLFLAAWEGNVDAVRLLLLAKVDPLLTPHLGTSERASLPLDVAAGLGHLEVVNELIRQVGIGGCGGSSGGVRALQQAARNKHLDMLTVLTNAGV 146
BLAST of mRNA_H-canaliculatus_F_contig10045.77.1 vs. uniprot
Match: UPI001603C39C (transient receptor potential cation channel subfamily A member 1-like n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI001603C39C) HSP 1 Score: 78.6 bits (192), Expect = 2.950e-13 Identity = 52/124 (41.94%), Postives = 70/124 (56.45%), Query Frame = 1 Query: 88 QTPLMVASVIGSSRVVRDLLRQGASVSVADSDGCTALHHSVHHKH-LGVSKDLIEAGADLEARPGGVYGTPLHVTATKGFCQGMVMLIDAGANVDSRLDDGATPLFFAASDGRLEAVRVLLRAN 456 +TPLM+A++ G S +R LL GA V AD DG T LHH V H L + +A LE + G TPLH A GF + + L+ AGA+ +SR ++G T L AA GRL ++ LLR + Sbjct: 81 RTPLMLAALFGDSDSLRLLLSTGADVRRADCDGRTVLHHGVGHSRVLDILLQNKKAKRLLEKKDGAGC-TPLHHAAQGGFDKNVRSLLAAGADRNSRNNNGETALHEAARHGRLNVIKTLLRGS 203 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10045.77.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig10045.77.1 >prot_H-canaliculatus_F_contig10045.77.1 ID=prot_H-canaliculatus_F_contig10045.77.1|Name=mRNA_H-canaliculatus_F_contig10045.77.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=218bp MPSTLSKASGSADPTIATTDIHRGCGDTNQTPLMVASVIGSSRVVRDLLRback to top mRNA from alignment at H-canaliculatus_F_contig10045:17..670- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig10045.77.1 ID=mRNA_H-canaliculatus_F_contig10045.77.1|Name=mRNA_H-canaliculatus_F_contig10045.77.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=654bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10045:17..670- (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10045:17..670- >mRNA_H-canaliculatus_F_contig10045.77.1 ID=mRNA_H-canaliculatus_F_contig10045.77.1|Name=mRNA_H-canaliculatus_F_contig10045.77.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1308bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10045:17..670- (Hapterophycus canaliculatus Oshoro5f female)back to top |