mRNA_H-canaliculatus_F_contig1004.72.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig1004.72.1 vs. uniprot
Match: A0A6H5KH15_9PHAE (Arrestin_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH15_9PHAE) HSP 1 Score: 464 bits (1195), Expect = 1.150e-153 Identity = 241/391 (61.64%), Postives = 297/391 (75.96%), Query Frame = 2 Query: 44 MGIEIDVSTRQRACFAGDTVKGAVRLKVTAKDGGSPAGDLVLRLVGLAKTRAMYEAVGVLPTVSGASTYTHRDTMSEDMEFLGFDVTLRSFGGKVDAGEYVIPFAVVLPPSLPPSMKEIGGDGSCAIAYGFKARLHRPGMLNFDAKDKAQLLVLGKPQEADVSPPVVIGPDTRALKRCFCLPSGSMSVGLQADRSVVGLSENLGLTVVARNDSSASVKSLHIEIVQETTWYAKGVKGSSVRAIESVTVPGTELRAAEVGDRRGRSPSAVADTARADLQQELAAGGGKRFEISVPLDASLTLQSEAIEVRHVLVVRLQTPSCVDSPDVWMPLRVQPGTS-ISPEVLAGANSSAASPPPPFSNVAPVSV--PQTAVQLAFTQELPPDSGPASK 1207
MGIE+D+STRQ CF GD ++G VRL VTAKD GSPAG LV+RLVGLAKTRAM+ A GV+PT SGA+ YT+RD +SED+EFLG+DV L FGGK +GE+ F+V LPPSLP SMKE GG+GSCAIAYGF+ARLHRPG+LNFDAK K QL VLGKP+E S PVV GP +A+K+C+CL SGSMS+G QADRSVVGL+E++G+ VVARNDSS +VK+L +E+VQET+W A G S R ++SV VPG EL AAE G +RG+S +A+ADTARADL+++LA+G G R E++VP D S+TL SE I+VRHVL VR+Q P CV+ PDVW L VQPGTS + P+V +S A P S PV+V P +AV+LA+ E P SG K
Sbjct: 1 MGIELDISTRQSTCFPGDVIQGTVRLNVTAKDAGSPAGSLVIRLVGLAKTRAMFIATGVVPTTSGAAPYTYRDMLSEDVEFLGYDVQLADFGGKAASGEHTYDFSVTLPPSLPASMKEQGGNGSCAIAYGFRARLHRPGLLNFDAKGKVQLKVLGKPEETSASSPVVAGPAVKAVKKCYCLQSGSMSLGFQADRSVVGLNESVGVIVVARNDSSVAVKNLRVELVQETSWTANGAGDVSTRVVKSVVVPGAELGAAEFGGQRGQSAAAIADTARADLERQLASGAGTRHELTVPADTSITLNSETIQVRHVLTVRIQGPRCVECPDVWTSLHVQPGTSGVVPKVHEETSSLA-----PSSTARPVTVTVPPSAVKLAYNHEQPRTSGTVGK 386
BLAST of mRNA_H-canaliculatus_F_contig1004.72.1 vs. uniprot
Match: D7FWP6_ECTSI (Arrestin_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWP6_ECTSI) HSP 1 Score: 406 bits (1044), Expect = 4.570e-131 Identity = 229/420 (54.52%), Postives = 278/420 (66.19%), Query Frame = 2 Query: 44 MGIEIDVSTRQRACFAGDTVKGAVRLKVTAKDGGSPAGDLVLRLVGLAKTRAMYEAVGVLPTVSGASTYTHRDTMSEDMEFLGFDVTLRSFGGKVDAGEYVIPFAVVLPPSLPPSMKEIGGDGSCAIAYGFKARLHRPGMLNFDAKDKAQLLVLGKPQEADVSPPVVIGPDTRALKRCFCLPSGS-----------------------------MSVGLQADRSVVGLSENLGLTVVARNDSSASVKSLHIEIVQETTWYAKGVKGSSVRAIESVTVPGTELRAAEVGDRRGRSPSAVADTARADLQQELAAGGGKRFEISVPLDASLTLQSEAIEVRHVLVVRLQTPSCVDSPDVWMPLRVQPGTS-ISPEVLAGANSSAASPPPPFSNVAPVSV--PQTAVQLAFTQELPPDSGPASK 1207
MGIEID+STRQ CF GD ++G VRL VTAKD GSPAG LV+RLVGLAKTRAM+ A GV+PT SGA+ YT+RDT+SED+EFLG+DV L FGG+ +GE+ F+V LPPSLP SMKE GG GSCAIAYGF+ARLHRPG+LNFDAK K QL VLGKPQE S PVV GP+ A+K+C+CL SGS MS+G QADRSVVGL+E++G+TVVARNDSS +VK+L IE+VQET+W A G S RA++SV VPG EL A E G +RGRS +A+ADTARADL+ +LA+G G R+E++VP D S+TL SE I QPGTS + P+V +S A P S PV+V P +AV+LA+ E P SG K
Sbjct: 1 MGIEIDISTRQSTCFPGDVIQGTVRLNVTAKDAGSPAGSLVIRLVGLAKTRAMFTATGVVPTESGAAPYTYRDTLSEDVEFLGYDVQLADFGGRAASGEHTYDFSVTLPPSLPASMKEQGGGGSCAIAYGFRARLHRPGLLNFDAKGKVQLKVLGKPQETSASSPVVAGPEVMAVKKCYCLQSGSCVAESRSTMDLGHRHARWQHGAPTNSHESMSLGFQADRSVVGLNESVGITVVARNDSSVAVKNLRIELVQETSWTANGAGDVSTRAVKSVVVPGAELGAVEFGGQRGRSAAAIADTARADLESQLASGAGTRYELTVPADTSITLNSETI---------------------------QPGTSGVVPKVHEETSSLA-----PSSTARPVTVTVPPSAVKLAYNHEQPRTSGAVGK 388
BLAST of mRNA_H-canaliculatus_F_contig1004.72.1 vs. uniprot
Match: D7FWP5_ECTSI (Arrestin_N domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWP5_ECTSI) HSP 1 Score: 399 bits (1024), Expect = 4.810e-128 Identity = 211/393 (53.69%), Postives = 281/393 (71.50%), Query Frame = 2 Query: 44 MGIEIDVSTRQRACFAGDTVKGAVRLKVTAK-DGGSPAGDLVLRLVGLAKTRAMYEAVGVLPTVSGASTYTHRDTMSEDMEFLGFDVTLRSFGGKVDAGEYVIPFAVVLPPSLPPSMKEIGGDG-SCAIAYGFKARLHRPGMLNFDAKDKAQLLVLGKPQEADVSPPVVIGPDTRALKRCFCLPSGSMSVGLQADRSVVGLSENLGLTVVARNDSSASVKSLHIEIVQETTWYAKGVKGSSVRAIESVTVPGTELRAAEVGDRRGRSPSAVADTARADLQQELAAGGGKRFEISVPLDASLTLQSEAIEVRHVLVVRLQTPSCVDSPDVWMPLRVQPGTSISPEVLAGA-----NSSAASPPPPFS-------NVAPVSVPQTAVQLAFTQEL 1180
MGI+I +STRQ AC+AGD ++GAV L V+AK + GS A +LVLRL G+AKTR MY+ + S A +YTHR+ ++E EFL +DV L +FGGK +G + PF V+LPP LPPSM+E G G SC I YGF+ARLHRPGML+FDAK KA+L VL KP EA + PV++GP T+ +K+ C SGSMS+G QAD S VGL+E +GLTVVARNDSSA VK++H+EI Q +TW+A+G K S R + +V VPGT+LRA+E G++RGRS + +ADTARADLQ++L AG G +++ VP ++ LTLQ++ IEV+H L V L+TP C+ SPDVW PL V GT+ +P+ ++G +S A PF+ NV PVSVPQ+AV + +T +
Sbjct: 1 MGIDITISTRQGACYAGDVIEGAVHLNVSAKNEEGSSADELVLRLYGVAKTRVMYDTTNMAHNNSNAQSYTHREMLTEKKEFLSYDVQLAAFGGKAASGSHSFPFQVMLPPGLPPSMEENGSQGGSCEIFYGFEARLHRPGMLHFDAKGKAKLTVLSKPHEAGAATPVLVGPATQTVKKFCCFKSGSMSIGFQADHSEVGLNETVGLTVVARNDSSAEVKTMHVEIKQVSTWFARGYKESKTRTVAAVVVPGTQLRASEKGNQRGRSSAVIADTARADLQEQLGAGAGTHYDLLVPGNSLLTLQADLIEVKHTLSVMLKTPHCISSPDVWTPLLVHAGTTSAPDGVSGEGLFVPHSGEAI---PFATGLDDEGNVKPVSVPQSAVTMEYTNNI 390
BLAST of mRNA_H-canaliculatus_F_contig1004.72.1 vs. uniprot
Match: A0A7S1D0Y4_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D0Y4_CYCTE) HSP 1 Score: 79.3 bits (194), Expect = 1.370e-11 Identity = 83/328 (25.30%), Postives = 140/328 (42.68%), Query Frame = 2 Query: 257 RDTMSEDMEFLGFDVTLRSFGGK-VDAGEYVIPFAVVLPPSLPPSMKEIGGDGSCAIAYGFKARLHRPGMLNFDAKDKAQLLVLGKPQEADVSPPVVIGPDTRALKRCFCLPSGSMSVGLQADRSVVGLSENLGLTVVARNDSSASVKSLHIEIVQETTWYAKGV----KGSSVRAIESVTVPGT-ELRAAEVGDRRGRSPSAVADTARADLQQELAAGGGKRFEISVPLDASLTLQSEAIEVRHVLVVRLQTPSCVDSPDVWMPLRV---QPGTSISPEVLAGAN---SSAASPPPPFSNVAPVSVPQTAVQLAFTQ----ELPPDS 1192
+ + ++ +FL + L+ GK V AG YV PF++ LP SLP SM GG I Y A G +FD V +P + P + P T A+K GS++ G + VG L L V RNDS+ ++ + ++++ T K +++ E + +PG + ++ + + +T A + L EI VP + T + I+V H L ++L T + D+ + +PL++ T + PE +A S A PPP + V P + ++ F ++PP+S
Sbjct: 27 KPSFKQETQFLHVNAVLQDMRGKTVKAGNYVYPFSIHLPDSLPASMSSSGGRVEAQIQYKIAATF---GKTHFDRV----FGVTSRPLPPTMVP-CFVEPKTEAIKAMGLRTVGSVTFGAMVRDAHVGRGNTLSLAVACRNDSTVDIRRVEFKLIELITLSPKNQVPFQDKTTLLHCEDIALPGLIKGKSTRTAINQRQRSIDFHETNYAAIYDALL-HDSNTIEIPVPARSRDTHKGGIIKVEHYLKIKLHTNAFTDNVSIKIPLQIGNASTSTPLPPEAVASGTMVVDSEAVPPPLVPADSYVDRPASPAEIPFVSAVLLDIPPES 345
BLAST of mRNA_H-canaliculatus_F_contig1004.72.1 vs. uniprot
Match: A0A7S2Y4Y6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2Y4Y6_9STRA) HSP 1 Score: 70.5 bits (171), Expect = 2.380e-9 Identity = 71/274 (25.91%), Postives = 121/274 (44.16%), Query Frame = 2 Query: 275 DMEFLGFDVTLRSFGGKVDAGEYVIPFAVVLPPSLPPSMKE-IGGDGSCAIAYGFKARLHRPG----MLNFDAKDKAQLLVLGKPQEADVSPPVVIGPDTRALKRCFCLPSGSMSVGLQADRSVVGLSENLGLTVVARNDSSASVKSLHIEIVQETTWYAKGVKGSSVRAIESVTVPGTELRAAEVGDRRGRSPSAVADTARADLQQELAAGGGKRFEISVPLDASL----TLQSEAIEVRHVLVVRLQTPSCVDSPDVWMPLRVQPGTSISPE 1069
D+ F+G D GKV+ GEY +PF LP LPPSM+ G C + Y A L G ML+ + + +L KP + P + P T + + FC +GS++ + D + + +T+ N +S VK + +++QE +W KG K S E++ V +L A R ++ + V + DL + A I+VPL + + + ++V H + + + T + +P+R+ G + PE
Sbjct: 24 DLSFIGED-------GKVEKGEYRVPFKFDLPAKLPPSMQRGESTTGCCFVHYILHATLKGSGALEGMLDDTYETSYPVTLLSKPMKQRPPKPYRVDPATERVSK-FCFNTGSITFAAKLDDTQLSPGSPCNITLACHNYTSTDVKKVEAKLIQEISW--KGRKRRSDVWRETIAV--VKLPTAPPKQGRAKNTAQVENELVEDLSSAIEAEAPSGT-ITVPLTTAGKVIDSFKGTLVKVMHKIEIHVVTGFGATNISSSIPVRI--GQAPEPE 282
BLAST of mRNA_H-canaliculatus_F_contig1004.72.1 vs. uniprot
Match: A0A1E7EZE8_9STRA (Arrestin_N domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EZE8_9STRA) HSP 1 Score: 62.8 bits (151), Expect = 1.870e-6 Identity = 40/135 (29.63%), Postives = 65/135 (48.15%), Query Frame = 2 Query: 320 GKVDAGEYVIPFAVVLPPSLPPSMKEIGGDGSCAIAYGFKARLHRPGMLNFDAKDKAQLLVLGKPQEADVSPPVVIGPDTRALKRCFCLPSGSMSVGLQADRSVVGLSENLGLTVVARNDSSASVKSLHIEIVQE 724
GK++ G+YV+PF+ LP LP +M+ G I+Y K L G+ +D +A + V V P PD + +K C C GS+SVG D + + + ++ RN S VK ++ E+ ++
Sbjct: 107 GKIEPGQYVMPFSTALPAFLPSNMEINAKGGYAKISYKIKMALKGSGVF-WDYTAEASVYVTSASIARYV--PFDGPPDEQKVKSCCCFGRGSISVGASVDNTSLAKGQQAVISYACRNQSRNDVKDIYAELQEQ 238 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1004.72.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 6 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1004.72.1 >prot_H-canaliculatus_F_contig1004.72.1 ID=prot_H-canaliculatus_F_contig1004.72.1|Name=mRNA_H-canaliculatus_F_contig1004.72.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=391bp MGIEIDVSTRQRACFAGDTVKGAVRLKVTAKDGGSPAGDLVLRLVGLAKTback to top mRNA from alignment at H-canaliculatus_F_contig1004:11760..15758+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig1004.72.1 ID=mRNA_H-canaliculatus_F_contig1004.72.1|Name=mRNA_H-canaliculatus_F_contig1004.72.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3999bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1004:11760..15758+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1004:11760..15758+ >mRNA_H-canaliculatus_F_contig1004.72.1 ID=mRNA_H-canaliculatus_F_contig1004.72.1|Name=mRNA_H-canaliculatus_F_contig1004.72.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2346bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1004:11760..15758+ (Hapterophycus canaliculatus Oshoro5f female)back to top |