Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 1 |
| Model size | 1021 |
| Cds size | 522 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622928632.1476827-UTR-H-canaliculatus_F_contig10037:3280..3670 | 1622928632.1476827-UTR-H-canaliculatus_F_contig10037:3280..3670 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig10037 3281..3670 + |
| 1696845503.8508086-UTR-H-canaliculatus_F_contig10037:3280..3670 | 1696845503.8508086-UTR-H-canaliculatus_F_contig10037:3280..3670 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig10037 3281..3670 + |
| 1622928632.174786-UTR-H-canaliculatus_F_contig10037:4192..4301 | 1622928632.174786-UTR-H-canaliculatus_F_contig10037:4192..4301 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig10037 4193..4301 + |
| 1696845503.8685558-UTR-H-canaliculatus_F_contig10037:4192..4301 | 1696845503.8685558-UTR-H-canaliculatus_F_contig10037:4192..4301 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig10037 4193..4301 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622928632.1619627-CDS-H-canaliculatus_F_contig10037:3670..4192 | 1622928632.1619627-CDS-H-canaliculatus_F_contig10037:3670..4192 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10037 3671..4192 + |
| 1696845503.8590071-CDS-H-canaliculatus_F_contig10037:3670..4192 | 1696845503.8590071-CDS-H-canaliculatus_F_contig10037:3670..4192 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10037 3671..4192 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig10037.71.1 >prot_H-canaliculatus_F_contig10037.71.1 ID=prot_H-canaliculatus_F_contig10037.71.1|Name=mRNA_H-canaliculatus_F_contig10037.71.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=174bp
MSPETTYFGITAGRASRARPCLCTCTHPPLPAGGANSSPYARDPTRILPS
SACSLGECPARPVTALFPVRAGGGTRSSIQAIERISDVARTAAAAAAAAP
ARQSETANRFEPGGRRRSARQSSFHSTGVITYTLRKATWHGAFALRAVSA
VRVLRRATPGCQPRAGKRGHTEV* back to topmRNA from alignment at H-canaliculatus_F_contig10037:3281..4301+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-canaliculatus_F_contig10037.71.1 ID=mRNA_H-canaliculatus_F_contig10037.71.1|Name=mRNA_H-canaliculatus_F_contig10037.71.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1021bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10037:3281..4301+ (Hapterophycus canaliculatus Oshoro5f female)
ACCGATAAACCGATAGGGACGGAGGGCGCTGTGTCGTTGGTGTTCGTGAG
GAGGCCAGGAGAGAGGGGGACGAACGACCCGCGCCCCCGCCCCCCATCCC
CCCCGCAGTCTCTCTCTCCACTCCTGCTTCGACCCCAGCGCCGACGGCAA
AGCTCGCGGGCTGCTCGCTGAGCGCAAAGCTCTCGAACTCCCACGCGTGT
ACATGCTGCCTGCGTCTGCCCTGACCACCTTGACGCCCAGCAGTGGCGCG
AGAGTTCTTGCTGGCGCACCTCCGCTTCGCTTCTACCCCACGCTGCTGTG
ACCACCGCTCTGCTTCTCATCGTGTGTCAAGGTAACTCCACCGGCAGAGA
GAAACCCGAGGTGATCCTTCCAAGCGGAACTCGCGGGTTGATGTCTCCCG
AGACAACATATTTCGGGATCACTGCTGGAAGAGCGAGTCGCGCGAGACCT
TGCCTCTGCACTTGTACCCACCCTCCTCTCCCGGCCGGTGGCGCGAACTC
TTCGCCGTACGCGAGGGATCCGACACGAATCCTACCCTCGAGTGCCTGCT
CGCTCGGAGAGTGTCCCGCTCGTCCCGTCACGGCTCTTTTTCCCGTAAGA
GCGGGCGGCGGCACGCGCTCATCCATCCAGGCAATTGAGCGGATATCGGA
CGTCGCGAGAACGGCAGCAGCAGCAGCAGCAGCAGCACCCGCGCGACAAA
GCGAAACCGCGAACAGGTTCGAGCCGGGCGGACGGCGGCGTTCGGCCCGC
CAAAGCAGCTTTCATTCGACGGGGGTGATAACATACACCCTCCGAAAGGC
TACCTGGCATGGTGCTTTCGCTCTTCGAGCTGTTTCCGCGGTTCGTGTTC
TGCGCAGGGCAACACCTGGGTGCCAACCGCGGGCAGGGAAACGCGGGCAC
ACCGAGGTGTGATTTCGAACAACAACAACAGTGAGATGGCCACCGCGCAA
GACCCAAAGGCGTGAACACTTACGTACGTACAGGCTACCTCCCCGCTACG
GGAAAAGACAAAAAAAATCGA back to topCoding sequence (CDS) from alignment at H-canaliculatus_F_contig10037:3281..4301+ >mRNA_H-canaliculatus_F_contig10037.71.1 ID=mRNA_H-canaliculatus_F_contig10037.71.1|Name=mRNA_H-canaliculatus_F_contig10037.71.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1044bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10037:3281..4301+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTCTCCCGAGACAACATATTTCGGGATCACTGCTGGAAGAGCGAGTCG
CGCGAGACCTTGCCTCTGCACTTGTACCCACCCTCCTCTCCCGGCCGGTG
GCGCGAACTCTTCGCCGTACGCGAGGGATCCGACACGAATCCTACCCTCG
AGTGCCTGCTCGCTCGGAGAGTGTCCCGCTCGTCCCGTCACGGCTCTTTT
TCCCGTAAGAGCGGGCGGCGGCACGCGCTCATCCATCCAGGCAATTGAGC
GGATATCGGACGTCGCGAGAACGGCAGCAGCAGCAGCAGCAGCAGCACCC
GCGCGACAAAGCGAAACCGCGAACAGGTTCGAGCCGGGCGGACGGCGGCG
TTCGGCCCGCCAAAGCAGCTTTCATTCGACGGGGGTGATAACATACACCC
TCCGAAAGGCTACCTGGCATGGTGCTTTCGCTCTTCGAGCTGTTTCCGCG
GTTCGTGTTCTGCGCAGGGCAACACCTGGGTGCCAACCGCGGGCAGGGAA
ACGCGGGCACACCGAGGTGTGAATGTCTCCCGAGACAACATATTTCGGGA
TCACTGCTGGAAGAGCGAGTCGCGCGAGACCTTGCCTCTGCACTTGTACC
CACCCTCCTCTCCCGGCCGGTGGCGCGAACTCTTCGCCGTACGCGAGGGA
TCCGACACGAATCCTACCCTCGAGTGCCTGCTCGCTCGGAGAGTGTCCCG
CTCGTCCCGTCACGGCTCTTTTTCCCGTAAGAGCGGGCGGCGGCACGCGC
TCATCCATCCAGGCAATTGAGCGGATATCGGACGTCGCGAGAACGGCAGC
AGCAGCAGCAGCAGCAGCACCCGCGCGACAAAGCGAAACCGCGAACAGGT
TCGAGCCGGGCGGACGGCGGCGTTCGGCCCGCCAAAGCAGCTTTCATTCG
ACGGGGGTGATAACATACACCCTCCGAAAGGCTACCTGGCATGGTGCTTT
CGCTCTTCGAGCTGTTTCCGCGGTTCGTGTTCTGCGCAGGGCAACACCTG
GGTGCCAACCGCGGGCAGGGAAACGCGGGCACACCGAGGTGTGA back to top
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