mRNA_H-canaliculatus_F_contig10034.70.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig10034.70.1 vs. uniprot
Match: D7FXK3_ECTSI (ATP-dependent DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXK3_ECTSI) HSP 1 Score: 495 bits (1274), Expect = 1.210e-167 Identity = 263/335 (78.51%), Postives = 284/335 (84.78%), Query Frame = 1 Query: 1 LRSLREKGVDAASLTSSSASQAHAAAVMDDI------------TLGGXXXXXXXXGGRGKGA---PRTKLLYVTPEKLAKGGELTAALEGLASRGLISLLAVDEAHCVSTWGHDFRPAYLKLGAFRKKHLQGVPCIALTATATKEVCTDIMKQLAFRQGSRVLKTSFDRPEIHLSVRYKDAMDSGGALQSLVGLLRERRGQSGIVYCHKRATAEDLAKALTRELRDEALLDGGKAFLALPYHGKMSGADRTEAQAKFMSGEADVIAGSVAFGMGVDKANVRFVVHWDLPKSMEGLYQELGRAGRDGSQAVSIVYHSQESVGLLAFLARKPRPLTG 960 LR L EKGV+AASLTSSSAS++ AAAVMDDI T G R GA P+ KLLYVTPEKLAKGGELT AL GLA RGLISLLAVDEAHCVSTWGHDFRPAYL+LGAFRKKHL+GVPC+ALTATAT+EVC DI KQL FR+GSRVLKTSF+R EIHLSV YKDAMD GGAL+ LVG LRERRGQSGIVYCHKR TAE+LAKAL R LR+E+LLDGGKAFLA+PYHGKMS DRTEAQAKFMSGE DVIAGSVAFGMGVDK++VRFVVHWDLPKSMEGLYQELGRAGRDGS+AVS+VYHS+E+VGLLAFLARKPRPL G Sbjct: 88 LRGLYEKGVEAASLTSSSASRSRAAAVMDDILAYGGGSGSGHSTKEGVTSEKGGPNSRADGARAAPKIKLLYVTPEKLAKGGELTTALAGLAKRGLISLLAVDEAHCVSTWGHDFRPAYLELGAFRKKHLKGVPCLALTATATEEVCADIKKQLGFREGSRVLKTSFNRAEIHLSVHYKDAMD-GGALEHLVGFLRERRGQSGIVYCHKRDTAEELAKALNRALREESLLDGGKAFLAMPYHGKMSDHDRTEAQAKFMSGEVDVIAGSVAFGMGVDKSDVRFVVHWDLPKSMEGLYQELGRAGRDGSKAVSVVYHSRETVGLLAFLARKPRPLAG 421
BLAST of mRNA_H-canaliculatus_F_contig10034.70.1 vs. uniprot
Match: A0A6H5KCP0_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCP0_9PHAE) HSP 1 Score: 407 bits (1045), Expect = 2.200e-132 Identity = 206/245 (84.08%), Postives = 223/245 (91.02%), Query Frame = 1 Query: 232 SRGLISLLAVDEAHCVSTWGHDFRPAYLKLGAFRKKHLQGVPCIALTATATKEVCTDIMKQLAFRQGSRVLKTSFDRPEIHLSVRYKDAMDSGGALQSLVGLLRERRGQSGIVYCHKRATAEDLAKALTRELRDEALLDGGKAFLALPYHGKMSGADRTEAQA--KFMSGEADVIAGSVAFGMGVDKANVRFVVHWDLPKSMEGLYQELGRAGRDGSQAVSIVYHSQESVGLLAFLARKPRPLTG 960 +RGLISLLAVDEAHCVSTWGHDFRPAYL+LGAFRKKHL+GVPC+ALTATAT+EVC DI KQL FR+GSRVLKTSF+R EIHLSV YKDAMD GGAL+ LVG LRER GQSGIVYCHKR TAE+LAKAL R LR E+LLDG KAFLA+PYHGKMS DRTEAQA KFMSGE DVI GSVAFGMGVDK++VRFVVHWDLPKSMEGLYQELGRAGRDGS+AVS+VYHS+E+V LLAFLARKPRPL G Sbjct: 18 TRGLISLLAVDEAHCVSTWGHDFRPAYLELGAFRKKHLKGVPCLALTATATEEVCADIKKQLGFREGSRVLKTSFNRAEIHLSVHYKDAMD-GGALEHLVGFLRERSGQSGIVYCHKRDTAEELAKALNRALRKESLLDGRKAFLAMPYHGKMSDHDRTEAQARAKFMSGEVDVITGSVAFGMGVDKSDVRFVVHWDLPKSMEGLYQELGRAGRDGSKAVSVVYHSRETVELLAFLARKPRPLAG 261
BLAST of mRNA_H-canaliculatus_F_contig10034.70.1 vs. uniprot
Match: A0A176VZW5_MARPO (ATP-dependent DNA helicase n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176VZW5_MARPO) HSP 1 Score: 230 bits (586), Expect = 7.230e-66 Identity = 124/269 (46.10%), Postives = 173/269 (64.31%), Query Frame = 1 Query: 145 GAPRTKLLYVTPEKLAKGGELTAALEGLASRGLISLLAVDEAHCVSTWGHDFRPAYLKLGAFRKKHLQGVPCIALTATATKEVCTDIMKQLAFRQGSRVLKTSFDRPEIHLSVRYKDAMDSGGALQSLVGLLRERRGQSGIVYCHKRATAEDLAKALTRELRDEALLDGGKAFLALPYHGKMSGADRTEAQAKFMSGEADVIAGSVAFGMGVDKANVRFVVHWDLPKSMEGLYQELGRAGRDGSQAVSIVYHSQESVGLLAFLARKPRP 951 G P +LLYVTPE +A G +T ++ L RGL+SL+AVDEAHC+S+WGHDFRP+Y KL A R HL VP +ALTATA K+V D++K LA ++ +SF+RP I+ VRYKD + + A + L L++ IVYCH RAT +D+ L+++ + YH ++ R+EA ++ SG+ V+ +VAFGMG+D+ +VR V H+++PKS+EG YQE GRAGRDG A S++Y+ E GL+ FLARKP P Sbjct: 166 GRPSLRLLYVTPELIATPGFITR-IKKLHGRGLLSLIAVDEAHCISSWGHDFRPSYRKLSALRT-HLPDVPILALTATAAKKVQDDVVKSLALH-NPQIFISSFNRPNIYYEVRYKDLLKN--AYEDLRNLIKSNPDDCCIVYCHSRATCDDVGLRLSQDKISSRV-----------YHAGLAAKARSEALEEWTSGKVPVVIATVAFGMGIDRKDVRMVCHYNVPKSLEGFYQESGRAGRDGKPARSVIYYGLEDKGLMEFLARKPDP 418
BLAST of mRNA_H-canaliculatus_F_contig10034.70.1 vs. uniprot
Match: A0A1Y1I869_KLENI (ATP-dependent DNA helicase n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I869_KLENI) HSP 1 Score: 220 bits (561), Expect = 2.110e-62 Identity = 121/266 (45.49%), Postives = 165/266 (62.03%), Query Frame = 1 Query: 145 GAPRTKLLYVTPEKLAKGGELTAALEGLASRGLISLLAVDEAHCVSTWGHDFRPAYLKLGAFRKKHLQGVPCIALTATATKEVCTDIMKQLAFRQGSRVLKTSFDRPEIHLSVRYKDAMDSGGALQSLVGLLRERRGQSGIVYCHKRATAEDLAKALTRELRDEALLDGGKAFLALPYHGKMSGADRTEAQAKFMSGEADVIAGSVAFGMGVDKANVRFVVHWDLPKSMEGLYQELGRAGRDGSQAVSIVYHSQESVGLLAFLARK 942 G P TKLLYVTPE +A G + A L L RGL+SL+A+DE+HC+S WGHDFRP+Y +L A K+ L GVP +ALTATA K V DI++ L + + + SF+RP I VR+KD + + LV LL GQ IVYC R++ + LA L L G PYH + A+R+ +++G V+A ++AFGMG+D+A+VR VVH+++PKS+EG YQE GRAGRDG A S++Y+ E L+ F+ RK Sbjct: 140 GRPETKLLYVTPELIATKGFM-AKLRKLHGRGLLSLIAIDESHCISAWGHDFRPSYGRLAAL-KEQLPGVPVMALTATANKTVQEDILRSLNLERPL-IFQASFNRPNIRYEVRFKDVLPGQDPYRDLVRLLNAEPGQCAIVYCLSRSSCDGLAARL---------LSNG--IPCKPYHAGLPDAERSRTLKDWVTGRIPVVAATIAFGMGIDRADVRLVVHFNMPKSIEGFYQESGRAGRDGQPAKSVLYYGSEDESLMQFILRK 391
BLAST of mRNA_H-canaliculatus_F_contig10034.70.1 vs. uniprot
Match: C3YZS6_BRAFL (DNA helicase n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=C3YZS6_BRAFL) HSP 1 Score: 213 bits (541), Expect = 2.740e-62 Identity = 124/274 (45.26%), Postives = 163/274 (59.49%), Query Frame = 1 Query: 151 PRTKLLYVTPEKLAKGGELTAALEGLASRGLISLLAVDEAHCVSTWGHDFRPAYLKLGAFRKKHLQGVPCIALTATATKEVCTDIMKQLAFRQGSRVLKTSFDRPEIHLSVRYKDAMDS------GGALQSL----VGLLRERRGQSGIVYCHKRATAEDLAKALTRELRDEALLDGGKAFLALPYHGKMSGADRTEAQAKFMSGEADVIAGSVAFGMGVDKANVRFVVHWDLPKSMEGLYQELGRAGRDGSQAVSIVYHSQESVGLLAFLARK 942 P+TKLLY+TPE A G LE L SR L++ LAVDEAHCVS WGHDFRP YLKLG+ R+K L+ VPCIALTATAT V DI+ L ++ + KTS RP + V+YK+ +D A+++L V ++ GIVYC R ++A LT+ K L+ YH + + R E Q +M G+ VI +++FGMGVDKA VRFV HW++PKSM G YQE GRAGRDG QA +Y+S+ + FL ++ Sbjct: 117 PKTKLLYITPELAATPG-FQQLLETLKSRKLLAHLAVDEAHCVSQWGHDFRPDYLKLGSLREK-LEDVPCIALTATATSAVQKDIINSLHLQEPVQKFKTSVFRPNLFYDVKYKEVLDDPYEDLKDFAVKALGEEGVEPVKGPHKGCGIVYCRTRDGCTEVAARLTK-----------KGLLSKAYHAGLKDSTREEVQMDWMEGKVPVIVATISFGMGVDKATVRFVAHWNIPKSMAGYYQESGRAGRDGKQAFCRLYYSRHERDQVCFLIKQ 377
BLAST of mRNA_H-canaliculatus_F_contig10034.70.1 vs. uniprot
Match: A0A8B6H9D8_MYTGA (DNA helicase n=1 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6H9D8_MYTGA) HSP 1 Score: 222 bits (566), Expect = 6.380e-62 Identity = 129/280 (46.07%), Postives = 163/280 (58.21%), Query Frame = 1 Query: 151 PRTKLLYVTPEKLAKGGELTAALEGLASRGLISLLAVDEAHCVSTWGHDFRPAYLKLGAFRKKHLQGVPCIALTATATKEVCTDIMKQLAFRQGSRVLKTSFDRPEIHLSVRYKDAMDSGGALQSLVGLLRERRGQS----------------GIVYCHKRATAEDLAKALTRELRDEALLDGGKAFLALPYHGKMSGADRTEAQAKFMSGEADVIAGSVAFGMGVDKANVRFVVHWDLPKSMEGLYQELGRAGRDGSQAVSIVYHSQESVGLLAFLARK 942 P TKLLYVTPE++A G + A + L R L L VDEAHCVS WGHDFRP YLKLG FRK+ + GVPCIALTATAT++V DI+KQL ++ KTS RP ++ VR K+ + G + L E +S GIVYC R ++A LTR K L+ PYH + R E Q +M G+ VIA +++FGMGVDK NVRFV HW LPKSM G YQE GRAGRDG+Q+ +Y+S++ ++FL K Sbjct: 114 PNTKLLYVTPEQVATDGFKSLA-DSLMKRKLFKYLIVDEAHCVSQWGHDFRPDYLKLGCFRKR-IPGVPCIALTATATEQVLKDIIKQLKLKEPIAKFKTSCFRPNLYYDVRMKETL--GDPYKDLSEFCLEALNRSQAQKEELLENWSKYGCGIVYCRTRDACAEVASQLTR-----------KGVLSKPYHAGLKSGIREEVQNDWMEGKFPVIAATISFGMGVDKPNVRFVAHWTLPKSMAGYYQESGRAGRDGNQSYCRLYYSRQERDTISFLINK 378
BLAST of mRNA_H-canaliculatus_F_contig10034.70.1 vs. uniprot
Match: UPI001FAE2F9E (LOW QUALITY PROTEIN: ATP-dependent DNA helicase Q5-like n=1 Tax=Girardinichthys multiradiatus TaxID=208333 RepID=UPI001FAE2F9E) HSP 1 Score: 210 bits (534), Expect = 1.550e-61 Identity = 123/274 (44.89%), Postives = 158/274 (57.66%), Query Frame = 1 Query: 139 GKGAPRTKLLYVTPEKLAKGGELTAALEGLASRGLISLLAVDEAHCVSTWGHDFRPAYLKLGAFRKKHLQGVPCIALTATATKEVCTDIMKQLAFRQGSRVLKTSFDRPEIHLSVRYKDAMDSG-----GALQSLVGLLRERRGQS-GIVYCHKRATAEDLAKALTRELRDEALLDGGKAFLALPYHGKMSGADRTEAQAKFMSGEADVIAGSVAFGMGVDKANVRFVVHWDLPKSMEGLYQELGRAGRDGSQAVSIVYHSQESVGLLAFLARK 942 G P+ KLLY+TPE +A L GL SRGL+S LAVDEAHCVS WGHDFRP YLKLG R + + GVPC+ALTATA K V DI++ L R + F R +H V ++D + + ++ + + GQ GIVYC R E +A LT+ LA YH + G DRTE Q ++M G+ VI +++FGMGVDKANVRFV HW+L KS+ G YQE GRAGRDG ++ Y+S+ L FL R+ Sbjct: 106 GSNQPKLKLLYITPEMVASAS-FQPCLTGLCSRGLLSYLAVDEAHCVSQWGHDFRPDYLKLGELRAR-IPGVPCLALTATAPKNVQEDIVQSLRLRSPMSFVTPVFRR-NLHYDVIFRDLLPNPYVHLCAFIKKALAMSSGSAGQDCGIVYCRTREGCETVAYQLTK-----------LGVLAKSYHAGLKGGDRTEVQNEWMQGKVLVIVATISFGMGVDKANVRFVAHWNLAKSLAGYYQESGRAGRDGLPSLCRTYYSRRDKEXLNFLIRQ 365
BLAST of mRNA_H-canaliculatus_F_contig10034.70.1 vs. uniprot
Match: A0A8C9TLY1_SCLFO (ATP-dependent DNA helicase n=2 Tax=Scleropages formosus TaxID=113540 RepID=A0A8C9TLY1_SCLFO) HSP 1 Score: 214 bits (546), Expect = 2.130e-61 Identity = 126/266 (47.37%), Postives = 158/266 (59.40%), Query Frame = 1 Query: 148 APRTKLLYVTPEKLAKGGELTAALEGLASRGLISLLAVDEAHCVSTWGHDFRPAYLKLGAFRKKHLQGVPCIALTATATKEVCTDIMKQLAFRQGSRVLKTSFDRPEIHLSVRYKDAM-DSGGALQSLVGLLRERRGQSGIVYCHKRATAEDLAKALTRELRDEALLDGGKAFLALPYHGKMSGADRTEAQAKFMSGEADVIAGSVAFGMGVDKANVRFVVHWDLPKSMEGLYQELGRAGRDGSQAVSIVYHSQESVGLLAFLARK 942 +PR KLLYVTPE L+ L GL+SRGL+S LAVDEAHCVS WGHDFRP YLKLG R L GVPC+ALTATA V DI + L R T R +H + Y++ + D G L + + GI+YC R + E++A LT LL LA PYH + ADRT+AQ +M G+ VI +++FGMGVDKANVRFVVHW+L KS+ YQE GRAGRDG ++ VY+S + + FL +K Sbjct: 108 SPRLKLLYVTPEMLSSAS-FQPCLSGLSSRGLVSYLAVDEAHCVSQWGHDFRPDYLKLGELRGL-LSGVPCLALTATAPARVREDICRALRLRSPLS-FSTPVFRSNLHYDIIYRELVPDQYGHLHTFIVKALGGSSGCGIIYCRTRHSCEEVAHQLT-------LL----GVLAKPYHAGLKAADRTDAQNDWMQGKVPVIVATISFGMGVDKANVRFVVHWNLAKSLASYYQESGRAGRDGLPSLCRVYYSVQDQNQIRFLIQK 359
BLAST of mRNA_H-canaliculatus_F_contig10034.70.1 vs. uniprot
Match: A0A6J8CDI8_MYTCO (DNA helicase n=1 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J8CDI8_MYTCO) HSP 1 Score: 219 bits (559), Expect = 4.390e-61 Identity = 128/280 (45.71%), Postives = 163/280 (58.21%), Query Frame = 1 Query: 151 PRTKLLYVTPEKLAKGGELTAALEGLASRGLISLLAVDEAHCVSTWGHDFRPAYLKLGAFRKKHLQGVPCIALTATATKEVCTDIMKQLAFRQGSRVLKTSFDRPEIHLSVRYKDAMDSGGALQSLVGLLRERRGQS----------------GIVYCHKRATAEDLAKALTRELRDEALLDGGKAFLALPYHGKMSGADRTEAQAKFMSGEADVIAGSVAFGMGVDKANVRFVVHWDLPKSMEGLYQELGRAGRDGSQAVSIVYHSQESVGLLAFLARK 942 P+TKLLYVTPE++A G + A E L R L L VDEAHCVS WGHDFRP YLKLG FRK+ + GVPCIALTATAT++V DI+KQL ++ KTS RP ++ V+ K+ + G + L E +S GIVYC R ++A LTR K + PYH + R E Q +M G+ VIA +++FGMGVDK NVRFV HW LPKSM G YQE GRAGRDG+Q+ +Y+S++ ++FL K Sbjct: 114 PKTKLLYVTPEQVATDGFKSLA-ESLMKRKLFKYLIVDEAHCVSQWGHDFRPDYLKLGYFRKR-IPGVPCIALTATATEQVLKDIIKQLKLKEPIAKFKTSCFRPNLYYDVKMKETL--GDPYKDLSEFCLEALNRSQAQKEELLENWSEYGCGIVYCRTRDACAEVASQLTR-----------KGVPSKPYHAGLKSGIREEVQNDWMEGKFPVIAATISFGMGVDKPNVRFVAHWTLPKSMAGYYQESGRAGRDGNQSYCRLYYSRQERDTISFLINK 378
BLAST of mRNA_H-canaliculatus_F_contig10034.70.1 vs. uniprot
Match: UPI001C3DAD5E (ATP-dependent DNA helicase Q5-like n=2 Tax=Oncorhynchus tshawytscha TaxID=74940 RepID=UPI001C3DAD5E) HSP 1 Score: 207 bits (528), Expect = 4.780e-61 Identity = 125/273 (45.79%), Postives = 157/273 (57.51%), Query Frame = 1 Query: 148 APRTKLLYVTPEKLAKGGELTAALEGLASRGLISLLAVDEAHCVSTWGHDFRPAYLKLGAFRKKHLQGVPCIALTATATKEVCTDIMKQLAFRQGSRVLKTSFDRPEIHLSVRYKDAMDSGGALQSLVGLLRER-------RGQS-GIVYCHKRATAEDLAKALTRELRDEALLDGGKAFLALPYHGKMSGADRTEAQAKFMSGEADVIAGSVAFGMGVDKANVRFVVHWDLPKSMEGLYQELGRAGRDGSQAVSIVYHSQESVGLLAFLARK 942 +PR KLLY+TPE +A L GL SR L+S LAVDEAHCVS WGHDFRP YLKLG+ R + L G+PC+ALTATA ++V DI K L R F R +H V Y++ ++ + L +RE +GQ GIVYC R E +A LT+ LA PYH + DRTEAQ +M G+ VI +++FGMGVDK+NVRFV HW+L KS+ YQE GRAGRDG + Y+S + L FL RK Sbjct: 69 SPRLKLLYITPEMVASSA-FQPCLTGLLSRSLLSYLAVDEAHCVSQWGHDFRPDYLKLGSLRAR-LPGIPCVALTATAPQKVQEDIAKSLRLRSPLSFATPVF-RSNLHYEVVYRELLED--PYKHLHAFIREALTLGEGPKGQGCGIVYCRTRDGCETVAYQLTK-----------LGVLAKPYHAGLKAGDRTEAQTDWMQGKVLVIVATISFGMGVDKSNVRFVAHWNLAKSLASYYQESGRAGRDGLPSSCRTYYSPKDREQLNFLIRK 325 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10034.70.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig10034.70.1 >prot_H-canaliculatus_F_contig10034.70.1 ID=prot_H-canaliculatus_F_contig10034.70.1|Name=mRNA_H-canaliculatus_F_contig10034.70.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=320bp LRSLREKGVDAASLTSSSASQAHAAAVMDDITLGGGGGGGGGDGGRGKGAback to top mRNA from alignment at H-canaliculatus_F_contig10034:407..5151- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig10034.70.1 ID=mRNA_H-canaliculatus_F_contig10034.70.1|Name=mRNA_H-canaliculatus_F_contig10034.70.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=4745bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10034:407..5151- (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10034:407..5151- >mRNA_H-canaliculatus_F_contig10034.70.1 ID=mRNA_H-canaliculatus_F_contig10034.70.1|Name=mRNA_H-canaliculatus_F_contig10034.70.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1920bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10034:407..5151- (Hapterophycus canaliculatus Oshoro5f female)back to top |