mRNA_H-canaliculatus_F_contig10028.64.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig10028.64.1 vs. uniprot
Match: D8LU88_ECTSI (Ubiquitin domain-containing protein (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU88_ECTSI) HSP 1 Score: 218 bits (554), Expect = 5.200e-63 Identity = 105/118 (88.98%), Postives = 112/118 (94.92%), Query Frame = 1 Query: 1 GGAVNRRIVLMRRDCEHTSERTEPFLVLTAEVQDKDSLEGSLQLLVAGEMLSGDNCYLCEKCGQRVTAQRRCAIKQLPSTLIVHLKRFEFDLSTMRRHKLNHRCSFPMELDMAPWTLE 354 GG + +++ RDCEHTSERTEPF+VLTAEVQDK+SLEGSLQLLVAGEML+GDNCYLCEKCGQRVTAQRRCAIKQLPSTLIVHLKRFEFDLSTMRRHKLNHRCSFPMELDMAPWTLE Sbjct: 2799 GGTLAYQVI--SRDCEHTSERTEPFIVLTAEVQDKESLEGSLQLLVAGEMLTGDNCYLCEKCGQRVTAQRRCAIKQLPSTLIVHLKRFEFDLSTMRRHKLNHRCSFPMELDMAPWTLE 2914
BLAST of mRNA_H-canaliculatus_F_contig10028.64.1 vs. uniprot
Match: A0A6H5KTV6_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTV6_9PHAE) HSP 1 Score: 216 bits (550), Expect = 1.790e-62 Identity = 104/118 (88.14%), Postives = 111/118 (94.07%), Query Frame = 1 Query: 1 GGAVNRRIVLMRRDCEHTSERTEPFLVLTAEVQDKDSLEGSLQLLVAGEMLSGDNCYLCEKCGQRVTAQRRCAIKQLPSTLIVHLKRFEFDLSTMRRHKLNHRCSFPMELDMAPWTLE 354 GG + +++ RDCEHTSERTEPF+VLTAEVQDK+SLEGSLQLLVAGEML+GDNCYLCEKCGQRVTAQRRCAIKQLPSTLIVHLKRFEFDL TMRRHKLNHRCSFPMELDMAPWTLE Sbjct: 1816 GGTLAYQVI--SRDCEHTSERTEPFIVLTAEVQDKESLEGSLQLLVAGEMLTGDNCYLCEKCGQRVTAQRRCAIKQLPSTLIVHLKRFEFDLGTMRRHKLNHRCSFPMELDMAPWTLE 1931
BLAST of mRNA_H-canaliculatus_F_contig10028.64.1 vs. uniprot
Match: A0A835YQG3_9STRA (USP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQG3_9STRA) HSP 1 Score: 151 bits (382), Expect = 1.020e-43 Identity = 73/108 (67.59%), Postives = 83/108 (76.85%), Query Frame = 1 Query: 1 GGAVNRRIVLMRRDCEHTSERTEPFLVLTAEVQDKDSLEGSLQLLVAGEMLSGDNCYLCEKCGQRVTAQRRCAIKQLPSTLIVHLKRFEFDLSTMRRHKLNHRCSFPM 324 GG + +IV C HTS R EPFL+LTAEVQ KD+L +L L +GE L GDN YLCE+CG+RV AQRRCAIK LP TLIVHLKRFEF+L TM RHKLNHRC+FPM Sbjct: 105 GGTLQYQIVPREPGCAHTSTRDEPFLMLTAEVQTKDTLAAALDLFTSGETLDGDNKYLCEQCGRRVAAQRRCAIKDLPPTLIVHLKRFEFNLETMTRHKLNHRCAFPM 212
BLAST of mRNA_H-canaliculatus_F_contig10028.64.1 vs. uniprot
Match: A0A7S4ITW2_9EUKA (Ubiquitin carboxyl-terminal hydrolase (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4ITW2_9EUKA) HSP 1 Score: 134 bits (336), Expect = 6.600e-35 Identity = 64/118 (54.24%), Postives = 84/118 (71.19%), Query Frame = 1 Query: 1 GGAVNRRIVLMRRDCEHTSERTEPFLVLTAEVQDKDSLEGSLQLLVAGEMLSGDNCYLCEKCGQRVTAQRRCAIKQLPSTLIVHLKRFEFDLSTMRRHKLNHRCSFPMELDMAPWTLE 354 GG V +++ ++CEH SER EPF L+ V+ K SLE SL+L V G+ML GDN Y C KC ++VTA +RC I+ LP+TLIVH+KRFEFDL MRR K+N C FP +L++ P+T E Sbjct: 181 GGTVCNQVI--SKECEHVSERQEPFYSLSVTVKGKSSLEESLELYVEGDMLEGDNKYQCSKCDKKVTALKRCCIESLPNTLIVHMKRFEFDLEEMRRMKVNDHCKFPFDLNVEPYTKE 296
BLAST of mRNA_H-canaliculatus_F_contig10028.64.1 vs. uniprot
Match: UPI000644FF27 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644FF27) HSP 1 Score: 131 bits (329), Expect = 1.040e-32 Identity = 68/137 (49.64%), Postives = 86/137 (62.77%), Query Frame = 1 Query: 1 GGAVNRRIVLMRRDCEHTSERTEPFLVLTAEVQDKDSLEGSLQLLVAGEMLSGDNCYLCEKCGQRVTAQRRCAIKQLPSTLIVHLKRFEFDLSTMRRHKLNHRCSFPMELDMAPWTLEVRRRGWTVCLASCPLVPSP 411 G +VN+ I ++C H SER EPF ++ EV++K ++ SLQL V E L GDN Y C +C Q+V R +K LP+TLI+H KRFEFDL TMRR KLN FPMELDMAP+T EV R + A +P P Sbjct: 1436 GASVNQFI---SQECSHVSEREEPFYTMSVEVKNKKDIQESLQLFVESETLDGDNKYFCSQCSQKVKCLMRRCVKSLPNTLIIHNKRFEFDLDTMRRTKLNDALKFPMELDMAPYTKEVLERKEAIEKAKAQGLPEP 1569
BLAST of mRNA_H-canaliculatus_F_contig10028.64.1 vs. uniprot
Match: L8GPA8_ACACA (Ubiquitinyl hydrolase 1 n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GPA8_ACACA) HSP 1 Score: 127 bits (319), Expect = 2.310e-31 Identity = 62/118 (52.54%), Postives = 81/118 (68.64%), Query Frame = 1 Query: 1 GGAVNRRIVLMRRDCEHTSERTEPFLVLTAEVQDKDSLEGSLQLLVAGEMLSGDNCYLCEKCGQRVTAQRRCAIKQLPSTLIVHLKRFEFDLSTMRRHKLNHRCSFPMELDMAPWTLE 354 GGA++ +I+ +DC H SER E F L+ ++++K S+ SL L V G+ML GDN + C +C +V A +RC +K LP LIVHLKRFEFDL TM+R KLN C FPM LDM P+T E Sbjct: 1511 GGALSNQII--SKDCTHVSEREENFFTLSLDIKNKKSILESLALYVEGDMLEGDNKFHCSECNAKVDALKRCCVKNLPDNLIVHLKRFEFDLETMKRIKLNDSCQFPMILDMEPYTKE 1626
BLAST of mRNA_H-canaliculatus_F_contig10028.64.1 vs. uniprot
Match: A0A0D2WMI0_CAPO3 (Ubiquitinyl hydrolase 1 n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2WMI0_CAPO3) HSP 1 Score: 125 bits (314), Expect = 1.100e-30 Identity = 62/117 (52.99%), Postives = 79/117 (67.52%), Query Frame = 1 Query: 1 GGAVNRRIVLMRRDCEHTSERTEPFLVLTAEVQDKDSLEGSLQLLVAGEMLSGDNCYLCEKCGQRVTAQRRCAIKQLPSTLIVHLKRFEFDLSTMRRHKLNHRCSFPMELDMAPWTL 351 GG + ++I+ +DCEH S R E L EV++K S+ SL L V GEML GDN Y C C + VTA++R + LP TLIVHLKRFEFD+ T+RR+K+N C FP ELDM P+TL Sbjct: 1938 GGQLIQQII--SQDCEHVSSRVEDCFALQCEVKNKKSILESLALYVEGEMLDGDNKYFCATCSRHVTAKKRACVFSLPQTLIVHLKRFEFDMETLRRYKINDYCEFPHELDMEPYTL 2052
BLAST of mRNA_H-canaliculatus_F_contig10028.64.1 vs. uniprot
Match: A0A6B2KX30_9EUKA (USP domain-containing protein n=2 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2KX30_9EUKA) HSP 1 Score: 124 bits (311), Expect = 2.610e-30 Identity = 55/118 (46.61%), Postives = 84/118 (71.19%), Query Frame = 1 Query: 1 GGAVNRRIVLMRRDCEHTSERTEPFLVLTAEVQDKDSLEGSLQLLVAGEMLSGDNCYLCEKCGQRVTAQRRCAIKQLPSTLIVHLKRFEFDLSTMRRHKLNHRCSFPMELDMAPWTLE 354 GG + +++ ++ C+H ER EPF ++ +++ K++LE +L+L V GEML+G+N Y+CE CG+ V+ +RC IK LP L++HLKRFEFD T+ R K++ CSFPM L+M P+T E Sbjct: 104 GGNLTNQLIGVQ-GCDHKREREEPFYTISVDIKQKENLESALELFVQGEMLTGENKYMCESCGEPVSTLKRCCIKDLPHMLVIHLKRFEFDYDTLDRKKVSSPCSFPMLLNMEPYTAE 220
BLAST of mRNA_H-canaliculatus_F_contig10028.64.1 vs. uniprot
Match: A0A4D9CWN0_9STRA (USP domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CWN0_9STRA) HSP 1 Score: 124 bits (310), Expect = 3.630e-30 Identity = 59/115 (51.30%), Postives = 84/115 (73.04%), Query Frame = 1 Query: 1 GGAVNRRIVLMRRDCEHTSERTEPFLVLTAEVQDKDSLEGSLQLLVAGEMLSGDNCYLCEKCGQRVTAQRRCAIKQLPSTLIVHLKRFEFDLSTMRRHKLNHRCSFPMELDMAPW 345 G +VN+ ++ R+C H SE TEPF +L ++++K+SLE SL L V+GE+L+GDN Y C +CG++V A RR A++ +P LI+HLKRFEFDL M + K+N RCSFP+ L M P+ Sbjct: 876 GTSVNQ---IISRECPHRSETTEPFPMLKVDIKNKESLEDSLALYVSGELLAGDNKYYCAECGRKVEAVRRTALQHIPPILIIHLKRFEFDLEHMIKFKVNDRCSFPLHLTMDPY 987
BLAST of mRNA_H-canaliculatus_F_contig10028.64.1 vs. uniprot
Match: D3BM73_POLPP (Ubiquitin domain-containing protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BM73_POLPP) HSP 1 Score: 122 bits (306), Expect = 1.300e-29 Identity = 65/137 (47.45%), Postives = 84/137 (61.31%), Query Frame = 1 Query: 1 GGAVNRRIVLMRRDCEHTSERTEPFLVLTAEVQDKDSLEGSLQLLVAGEMLSGDNCYLCEKCGQRVTAQRRCAIKQLPSTLIVHLKRFEFDLSTMRRHKLNHRCSFPMELDMAPWTLEVRRRGWTVCLASCPLVPSP 411 G +VN+ I ++C H SER EPF ++ EV++K + SLQL V E L GDN Y C +C Q+V R +K+LP+TLI+H KRFEFDL MRR KLN + FPM LDMAP+T E R + A +P P Sbjct: 1383 GASVNQFI---SQECPHVSEREEPFYTISLEVKNKRDILDSLQLFVESETLDGDNKYFCSQCSQKVKCLMRRCVKKLPNTLIIHNKRFEFDLDLMRRTKLNDQLKFPMSLDMAPYTKECLERKEAIENAKAKGLPIP 1516 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10028.64.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig10028.64.1 >prot_H-canaliculatus_F_contig10028.64.1 ID=prot_H-canaliculatus_F_contig10028.64.1|Name=mRNA_H-canaliculatus_F_contig10028.64.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=127bp MRRDCEHTSERTEPFLVLTAEVQDKDSLEGSLQLLVAGEMLSGDNCYLCEback to top mRNA from alignment at H-canaliculatus_F_contig10028:2139..3257- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig10028.64.1 ID=mRNA_H-canaliculatus_F_contig10028.64.1|Name=mRNA_H-canaliculatus_F_contig10028.64.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1119bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10028:2139..3257- (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10028:2139..3257- >mRNA_H-canaliculatus_F_contig10028.64.1 ID=mRNA_H-canaliculatus_F_contig10028.64.1|Name=mRNA_H-canaliculatus_F_contig10028.64.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=762bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10028:2139..3257- (Hapterophycus canaliculatus Oshoro5f female)back to top |