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Homology
BLAST of mRNA_H-canaliculatus_F_contig10022.58.1 vs. uniprot
Match: A0A6H5L3X6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3X6_9PHAE) HSP 1 Score: 138 bits (347), Expect = 1.750e-37 Identity = 74/95 (77.89%), Postives = 81/95 (85.26%), Query Frame = 2 Query: 98 SDGEFSVDMDMLDDITSDEGFELGEMEILLAAAKGRQTLPAKAFSLARLLFRRALPVSFADTRDARMLLMSRARGAGRDRAMHNFENLLTVCTDD 382
SDG+FSVDMD++DD+T+DEGFELGEMEILLAA K RQTL AKA SL RLL RRALP SF DTRDA MLLMSRAR AGR++AM FENLLTV T D
Sbjct: 143 SDGQFSVDMDIVDDVTNDEGFELGEMEILLAAVKARQTLAAKAASLGRLLARRALPTSFTDTRDAHMLLMSRARSAGREKAMRKFENLLTVETGD 237
BLAST of mRNA_H-canaliculatus_F_contig10022.58.1 vs. uniprot
Match: D7G286_ECTSI (Centrin-1, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G286_ECTSI) HSP 1 Score: 145 bits (365), Expect = 5.370e-37 Identity = 77/95 (81.05%), Postives = 83/95 (87.37%), Query Frame = 2 Query: 98 SDGEFSVDMDMLDDITSDEGFELGEMEILLAAAKGRQTLPAKAFSLARLLFRRALPVSFADTRDARMLLMSRARGAGRDRAMHNFENLLTVCTDD 382
SDG+FSVDMDM+DD+T+DEGFELGEMEILLAA K RQTL AKA SL RLL RRALP+S DTRDARMLLMSRAR AGRD+AMH FENLLTV T D
Sbjct: 2822 SDGQFSVDMDMVDDVTNDEGFELGEMEILLAAVKARQTLAAKAASLGRLLARRALPISLTDTRDARMLLMSRARSAGRDKAMHQFENLLTVETGD 2916
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Model size | 514 |
| Cds size | 309 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622928630.9049866-UTR-H-canaliculatus_F_contig10022:3217..3338 | 1622928630.9049866-UTR-H-canaliculatus_F_contig10022:3217..3338 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig10022 3218..3338 + |
| 1696845503.0207853-UTR-H-canaliculatus_F_contig10022:3217..3338 | 1696845503.0207853-UTR-H-canaliculatus_F_contig10022:3217..3338 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig10022 3218..3338 + |
| 1622928630.964344-UTR-H-canaliculatus_F_contig10022:4863..4947 | 1622928630.964344-UTR-H-canaliculatus_F_contig10022:4863..4947 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig10022 4864..4947 + |
| 1696845503.079541-UTR-H-canaliculatus_F_contig10022:4863..4947 | 1696845503.079541-UTR-H-canaliculatus_F_contig10022:4863..4947 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig10022 4864..4947 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622928630.920629-CDS-H-canaliculatus_F_contig10022:3338..3389 | 1622928630.920629-CDS-H-canaliculatus_F_contig10022:3338..3389 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10022 3339..3389 + |
| 1696845503.0461245-CDS-H-canaliculatus_F_contig10022:3338..3389 | 1696845503.0461245-CDS-H-canaliculatus_F_contig10022:3338..3389 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10022 3339..3389 + |
| 1622928630.9359531-CDS-H-canaliculatus_F_contig10022:4038..4151 | 1622928630.9359531-CDS-H-canaliculatus_F_contig10022:4038..4151 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10022 4039..4151 + |
| 1696845503.0567322-CDS-H-canaliculatus_F_contig10022:4038..4151 | 1696845503.0567322-CDS-H-canaliculatus_F_contig10022:4038..4151 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10022 4039..4151 + |
| 1622928630.951836-CDS-H-canaliculatus_F_contig10022:4718..4863 | 1622928630.951836-CDS-H-canaliculatus_F_contig10022:4718..4863 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10022 4719..4863 + |
| 1696845503.0668473-CDS-H-canaliculatus_F_contig10022:4718..4863 | 1696845503.0668473-CDS-H-canaliculatus_F_contig10022:4718..4863 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10022 4719..4863 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig10022.58.1 >prot_H-canaliculatus_F_contig10022.58.1 ID=prot_H-canaliculatus_F_contig10022.58.1|Name=mRNA_H-canaliculatus_F_contig10022.58.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=103bp
MDMLDDITSDEGFELGEMEILLAAAKGRQTLPAKAFSLARLLFRRALPVS
FADTRDARMLLMSRARGAGRDRAMHNFENLLTVCTDDRNDTTVPLKAQAV
VE* back to topmRNA from alignment at H-canaliculatus_F_contig10022:3218..4947+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-canaliculatus_F_contig10022.58.1 ID=mRNA_H-canaliculatus_F_contig10022.58.1|Name=mRNA_H-canaliculatus_F_contig10022.58.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1730bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10022:3218..4947+ (Hapterophycus canaliculatus Oshoro5f female)
GCAGAGGGATAGGTTCCTCGGAAGTGGAAGCGATAGCGATGAGTGCGACG
ACGATGACGACGACGAAGTAGAACACGGAAACGATAGCGACGGGACTTCG
GACGGCGAGTTCTCGGTGGACATGGACATGTTGGACGACATAACAAGCGA
TGAGGGTTTCGAGCTGGGCGAGGTGCGTTCCGGGTCTGAAAAGATTGACC
ACACGGGGGAAAGGGTGCTTCCAGGGTGTTGTGCGGATGTGCAGCCTTTA
GCTATAGGGAAGAAGTCCAAGTCGAGACGACCTGGACAATTTTGTCACAA
GTTTTTGATTGACATCATGTTTGCGAGAGTGCGTGCTTTGGGAATCAGCC
GGAGCTGGAGCGCCGGGGAGATCGAGAATCTCCATTTACCCGCCTCTGTC
ACCCCTGAGTTAAGCGACGGTTGCTTGTTGACACATGCGAAAAGAAACTG
ACATGACTGGTTATTAGCCTGCCGCGCGAGGTTAGCCGTTCAGGCCGTTT
CCCAATGCTGCTCTCGGGTGATGCAGAGACCAAAGGACAAAACGCGCTTT
GTCCCACATGACTTTGTCGATAAAAGAAGAGTCCCAGAAAGAACGCTCCC
TGCAGTATGGTTGTTGGAGGGTTTGCTGGCCCTCTCTCTGAGGACTGAAG
CTGCCCGACCACGATTAAAATATGGGAGCAACGGCATCTTCCGTCCCGTC
GTGTTGGAGATGCATTGACTCAGCTTAACACTGAGTTCTTCAACTTTTTG
GTTGGGCTGCACGATTCACATCTCGATGGTTGCACCACCCGGTCGAAACT
TTGCCGACGTGAATGTATCAGATGGAGATACTCTTGGCGGCGGCGAAGGG
TCGGCAAACCCTCCCAGCGAAAGCCTTCAGTTTGGCGCGATTGTTGTTTC
GCAGAGCCCTGCCGGTTTCTTTCGCGGACACGAGGTAATGGCTGCCTTCA
TTCGCTAGAACCCGCAACGCCTATCTCGTTTGGGGGCAATGTATCGAGGG
CAGATGTCGTTTCTGTTGATACATGTGTGGCAAGACGAACCACAGCGTGA
GGGCAGGGTTAGCCCCTTGAAACCAACCTAAAAATTTGGTGAAGAAAGAA
ATGGGCTTGGGCAGGTAACTCAACCATGCCCCGATACTCCCCGCCACCCT
TCCACGGAAGAAGGTTTTGCTCCGCTGCTTGTCCCTCGACAAACTCGACC
CTTCTTTCGCCCTTTTGAGCGACATTCACAATGAATGGGGTCCAATCCTG
GCCATTCTCTACAGCAACCTTTGCTGCTCTTCGAAACGTCACGAAGCACG
AGTACGATATTCTTCCGTGAGACGAAGCAGCACGAAGGGTTCTGCAGTTA
TCTACCGCGCGGCTTCTACAAGAATGATAGCAGTGAGAAGTCGAGTTCCC
GCCTGCCGCTTCGTCATCATAAATTTATGTAATGCCTCTCCGTCTCCTCC
TCCTCCGCCGTCGTTGACCCTCGGCCTTTGTTCCCCCAACGCGTTCCGCA
GAGACGCACGCATGCTTCTCATGAGTCGAGCGCGCGGCGCAGGAAGGGAC
AGAGCCATGCACAACTTCGAGAACTTGCTGACCGTCTGCACAGACGACCG
CAACGACACTACAGTACCGCTGAAGGCACAAGCCGTGGTAGAGTAGGCCC
TAAACGAGTACTATTTGTGAAAGGAATGCGCTCTTTTCCCGTTGCCGGGA
GAGCGGATGGTGCTCGGTCGGATGGCAGAG back to topCoding sequence (CDS) from alignment at H-canaliculatus_F_contig10022:3218..4947+ >mRNA_H-canaliculatus_F_contig10022.58.1 ID=mRNA_H-canaliculatus_F_contig10022.58.1|Name=mRNA_H-canaliculatus_F_contig10022.58.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=618bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10022:3218..4947+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGACATGTTGGACGACATAACAAGCGATGAGGGTTTCGAGCTGGGCGA
GATGGACATGTTGGACGACATAACAAGCGATGAGGGTTTCGAGCTGGGCG
AGATGGAGATACTCTTGGCGGCGGCGAAGGGTCGGCAAACCCTCCCAGCG
AAAGCCTTCAGTTTGGCGCGATTGTTGTTTCGCAGAGCCCTGCCGGTTTC
TTTCGCGGACACGAGATGGAGATACTCTTGGCGGCGGCGAAGGGTCGGCA
AACCCTCCCAGCGAAAGCCTTCAGTTTGGCGCGATTGTTGTTTCGCAGAG
CCCTGCCGGTTTCTTTCGCGGACACGAGAGACGCACGCATGCTTCTCATG
AGTCGAGCGCGCGGCGCAGGAAGGGACAGAGCCATGCACAACTTCGAGAA
CTTGCTGACCGTCTGCACAGACGACCGCAACGACACTACAGTACCGCTGA
AGGCACAAGCCGTGGTAGAGTAGAGACGCACGCATGCTTCTCATGAGTCG
AGCGCGCGGCGCAGGAAGGGACAGAGCCATGCACAACTTCGAGAACTTGC
TGACCGTCTGCACAGACGACCGCAACGACACTACAGTACCGCTGAAGGCA
CAAGCCGTGGTAGAGTAG back to top
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