mRNA_H-canaliculatus_F_contig1002.53.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig1002.53.1 vs. uniprot
Match: D7FJE3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJE3_ECTSI) HSP 1 Score: 639 bits (1648), Expect = 1.730e-206 Identity = 420/832 (50.48%), Postives = 492/832 (59.13%), Query Frame = 2 Query: 1949 ANQEAREWRARRVRAAKMHHWTPVQVASWISHLLWKAEASRKLPLLFSGDAKGGIGSMLEDDTEVNTMKDCVIAPGGKTKEQEEPGANXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALPGVDPS-------NRGNGEIFSASEATIANNVTAVNLGMSRGSXXXXXXXXXXXXXXXXXXXYHDAYDDQSSSVEDGNANG-------------DNATGWADVEAGERTGYAGASVEPFAVKEGIDGSCVIEAMDDASGHAEDALTRFVKSSTRLARPAEVEKKRVELMVRELLTVRPYSAPSQLKIRAFCVAIVRSAEAPRDLTENQVDAQLPSLARVLTAGYRRQVEMVEQGLEFAAARIQGLVRGKHIRRIFASIWQEAEEYARNIVRGERDARLKKEKXXXXXXXXXXXXXXXXXXERYRLRLVPRVSSVTCSGMTVSLPPFLVAAARGARXXXXXXXXXXXXXXXXXXXXXXXXXXEETNNILDDNDRNWTKGRSGEANYAAGGGQIHVLLRQGAATELKGHLDSGRTTPSTSPTTRANSQAGWSGTARTKGGESGENPVQGRRRFLRAVGNGLSLSSLRPCTTYRLTLEVPPVIRNELLESARSLGLMEAIRSLETPTESDTHVANGGER--VGGDRN---ASSAGHLNVETLPDVPSEVSFLTCKVLTSASAVDPRDPSGVLSLRQWQSPYPGVAGERMDSPSSEDYVVVAPGRPEPLIALQWNEPRSNGLDVHSYVVERRVGRTGAWKKIRARDVGGDDGATVGGSTSERRDGGIRGAIRQRRSTDAVDAPLRTVSMDALRKVAVQGLSVAYR 4369
AN+EAREWR RRVRAAKMHHWTPV+VASWISHLL KAE S KLPLLFSGDAKGG SM DDT +++ VI P + ++ AN A P DP+ + +G + A +++IA +G ++G D +D + G+ N ++ GWA+VEAGERTGY+GA+VEPFAVKEGI+G C++EAM+DA GH EDALTRF+KSSTRLARPAEVE+KRVELMVRELLT+RPYS SQLK+RA V IVRSAEAPRD T ++++AQLPSLARVLTAGYRRQ MVEQGLEFAAARIQGL RGK IRR+ +SIWQ+A EYAR+IV+GER+AR+K+E XXXXXXXXXXXXXXXXX RYRLRLVPR SSVTC M VSLP FLVAAARGAR LSLS LRPCTTYRL L +PPVIRNELLESARSLG+ EAIRSLETPTES+T NGG GGD + AS++GHL+VETLPDVP EV L CKVLTSASAVDPRDPSGVLSLR+WQSPYP +A MD P ED+VV+APGRPEP+++LQW P +NGLD+ SY VERR+GRTGAW+K+R+R G T R DGG RQ + D VDAPLRT+S+D LR VAV GL+++YR
Sbjct: 66 ANREAREWRGRRVRAAKMHHWTPVEVASWISHLLRKAETSGKLPLLFSGDAKGGTTSMGGDDTGPGAVENRVINPTEEDAQESGTAANPTPEEGGGVVDSSDTTPVKTEGSSSPA--------------AAPPCDPAPSLADEVKKCSGVLADAQDSSIA------GVGQAQGD---------------------DNFDKNTDDGGHGDVNNXXXXXXXXXXXXENSNNGWAEVEAGERTGYSGAAVEPFAVKEGINGCCIMEAMEDALGHTEDALTRFIKSSTRLARPAEVEQKRVELMVRELLTIRPYSTASQLKLRALGVVIVRSAEAPRDPTNDEINAQLPSLARVLTAGYRRQAAMVEQGLEFAAARIQGLARGKKIRRVISSIWQQANEYARDIVQGEREARMKREXXXXXXXXXXXXXXXXXXARRYRLRLVPRASSVTCRSMVVSLPLFLVAAARGAR--------------------------------------------------------------------------------------------------------------------------SLSLSELRPCTTYRLALAIPPVIRNELLESARSLGVTEAIRSLETPTESETKDNNGGSDGVSGGDGDVGAASTSGHLDVETLPDVPGEVPLLKCKVLTSASAVDPRDPSGVLSLRRWQSPYPAIAN--MDGPVPEDFVVLAPGRPEPVVSLQWQGPENNGLDICSYTVERRIGRTGAWQKVRSR-----------GGTWRRGDGGGEDG-RQPLTFDEVDAPLRTISVDTLRAVAVNGLALSYR 720
BLAST of mRNA_H-canaliculatus_F_contig1002.53.1 vs. uniprot
Match: A0A6H5LN38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LN38_9PHAE) HSP 1 Score: 499 bits (1286), Expect = 8.920e-154 Identity = 347/814 (42.63%), Postives = 417/814 (51.23%), Query Frame = 2 Query: 2066 SRKLPLLFSGDAKGGIGSMLEDDTEVNTMKDCVIAPGGKTKEQEEPGANXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALPGVDPSNRGNGEIFSASEATI-ANNVTAVNLGMSRGSXXXXXXXXXXXXXXXXXXXYHDAYDDQSSSVEDGNANG------------DNAT-GWADVEAGERTGYAGASVEPFAVKEGIDGSCVIEAMDDASGHAEDALTRFVKSSTRLARPAEVEKKRVELMVRELLTVRPYSAPSQLKIRAFCVAIVRSAEAPRDLTENQVDAQLPSLARVLTAGYRRQVEMVEQGLEFAAARIQGLVRGKHIRRIFASIWQEAEEYARNIVRGERDARLKKEKXXXXXXXXXXXXXXXXXXERYRLRLVPRVSSVTCSGMTVSLPPFLVAAARGARXXXXXXXXXXXXXXXXXXXXXXXXXXEETNNILDDNDRNWTKGRSGEANYAAGGGQIHVLLRQGAATELKGHLDSGRTTPSTSPTTRANSQAGWSGTARTKGGESGENPVQGRRRFLRAVGNGLSLSSLRPCTTYRLTLEVPPVIRNELLESAR---------------------------SLGLMEAIRSLETPTESDTHVANGGERVG-----GDRNASSAGHLNVETLPDVPSEVSFLTCKVLTSASAVDPRDPSGVLSLRQWQSPYPGVAGERMDSPSSEDYVVVAPGRPEPLIALQWNEPRSNGLDVHSYVVERRVGRTGAWKKIRARDVGGDDGATVGGSTSERRDGGIRGAIRQRRSTDAVDAPLRTVSMDALRKVAVQGLSVAYR 4369
S KLPLL SGDAKGG SM DDT ++ VI P + ++ AN A P D + E+ S + A + + +G ++G D Y+ + GN N DN+ GWA+VEAGERTGY+GA+VEPFAVKEGI+G C++EAM+DA GH EDALTRF+KSSTRLARPAEVE+KRVELMVRELLT+RPYS SQLK+RA V IVRSAEAPRDLT ++++AQLP LARVLTAGYRRQ MVEQGLEFAAARIQGL RGKHIRR+ +SIWQ+A EYARNIV+GER+AR+K+EK E+ R+ PR + + +V R G T G + E QG R FL AVG LSLS LRPCTTYRL L +PPVIRNELLESAR SLG+ EAIRSLET TES G+ S++GHL+VETLPDVP EV L CKVLTSASAVDPRDPSGVLSLR+WQSPYP +A MD P ED+VV+APGRPEP+++LQW P +NGLD+ R+GRTGAW+K+R+R G T R DGG RQ + D VDAPLRT+S+D L++VAV GL++ YR
Sbjct: 116 SGKLPLLVSGDAKGGTTSMGGDDTGPGAAENRVINPTVENAQESGTAANPTPEEGGGVVDSSDTTPVKTEGSSSPA--------------AAPPCDSAPSLAEEVKKCSGVLVDAQDSSIAGVGQAQGD---------------------DNYEKNTDDGGHGNVNXXXXXXXXXXXSVDNSNNGWAEVEAGERTGYSGAAVEPFAVKEGINGCCIMEAMEDALGHTEDALTRFIKSSTRLARPAEVEQKRVELMVRELLTIRPYSTASQLKLRALGVVIVRSAEAPRDLTNDEINAQLPLLARVLTAGYRRQAAMVEQGLEFAAARIQGLARGKHIRRVMSSIWQQANEYARNIVQGEREARMKREKAQRAK-------------EKGRIFYRPRTT------------------------------------------------------------------------------RTNVRKRTG-----------------------------------TGNGGAREEAFQGPRTFLHAVGTSLSLSELRPCTTYRLALAIPPVIRNELLESARCAVGTIVHWMCFGSEGEAGKSDVSLQGSLGVTEAIRSLETSTESKXXXXXXXXXXXXXXXXGEGAESTSGHLDVETLPDVPGEVPLLKCKVLTSASAVDPRDPSGVLSLRRWQSPYPAIAN--MDGPVPEDFVVLAPGRPEPVVSLQWQGPENNGLDIC------RIGRTGAWQKVRSR-----------GGTGRRGDGGGEDG-RQPLTFDEVDAPLRTISVDTLKEVAVNGLALVYR 748 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1002.53.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1002.53.1 >prot_H-canaliculatus_F_contig1002.53.1 ID=prot_H-canaliculatus_F_contig1002.53.1|Name=mRNA_H-canaliculatus_F_contig1002.53.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=1708bp MCASSKEKECGNTSTLEGFEHKDVERVVNAVFGSSALQQLPRRFAMEDMVback to top mRNA from alignment at H-canaliculatus_F_contig1002:16444..30942+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig1002.53.1 ID=mRNA_H-canaliculatus_F_contig1002.53.1|Name=mRNA_H-canaliculatus_F_contig1002.53.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=14499bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1002:16444..30942+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1002:16444..30942+ >mRNA_H-canaliculatus_F_contig1002.53.1 ID=mRNA_H-canaliculatus_F_contig1002.53.1|Name=mRNA_H-canaliculatus_F_contig1002.53.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=10248bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1002:16444..30942+ (Hapterophycus canaliculatus Oshoro5f female)back to top |