mRNA_H-canaliculatus_F_contig1002.52.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig1002.52.1 vs. uniprot
Match: D7FJE2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJE2_ECTSI) HSP 1 Score: 1170 bits (3028), Expect = 0.000e+0 Identity = 781/1324 (58.99%), Postives = 910/1324 (68.73%), Query Frame = 1 Query: 1 TASQTEEETEAHLVLTELFTLEAEDDDVASDSEDGH-DHALIASPATAEVRTAGEEKSKHDEKDLNQEEALRSSARVLESGQTTNSNSRRSQSPTTQAMETQLRTMMNGITSSIDVASGTLQESAGDVLQRLMRDLHETEREVARQLQSVQAQMSREACTWLHRQTAGGLDRALIQGLEVRLTEVDDRCLAVVAKAFQDRRAVIESGMKEIVDEMVGAFDRHLEDSAASSKQHFRWMKRRYREKVDVNRAASKIELKDTILLDRCILEDKTKEIDDQYKEDIARLRVEFQLERSTLGKQRRELEQSVEVLRLEKVQAEEDASQAHRYIEALEDGAALHSEDGSVRSHKHSPRGGGRKSVGTRGSSRHASLRTGSAQASRRSSNHHQLHRQDSLNPGGNSPRGGAPRHAFAVAGAGAGASPRSPRSPRQTAAGGHTGGRSSLRGVHHQLAGG------GAAVAVASPQDTARSPRGGGSGQNTGR----------LASXXXXXXKAFVAGEGGGSVANNIGSSRQLINPAARHEEARQRFEKDVASKLMEVIEKKKLAHLQEELADEVKNREAATARLELMSQAIPKLHKDLTRVQDQLVQSRMENNELRNINTVLTTDLVRASTLGRQDR---NTAVSDAEAILIDHAAAGDRDPIGSTKHL-----SLRRAAGSIVGALRLDNRQ-NGRGGEGGGAGQQQEGTAGLRKAKEMGQWVVLQPTAENAPVPHGGSEE--LSTNEGANEGIARELITTLKRQVTGLEQERDAAAANAAVLLSDMDDLREERGHK---HSSEEAKLAADETQTGKKMGAVRLECENLKEIRRDLESKLAKMQVESDENEYLRRRLEAIERTTLKLNIGGGPSDLQILRERLDLESAEVVRLRSTVAGLQEEKLVLAEEKVDLEYELERLTKFKAEFENLAESSLNDSDSEGLKGGDGGGSAAAGCGDG-KWKQQAKRLQKYVKWQLAEAENQAQRDRAQMALESRSHDILMAEMSVLARRYRRELGRRCEVNRTLLQRLAELEGQVRPSCVRTGHFNADHHHRRRKVLQIAAVSTVATVGQCGNPRGGRTKTRDRAGSGRSGLRHHQRGNPAAAAPTLSPVALVPVHTIENAPEVVAASATARQRELVSASASVPMLAMVEAPTESKQN--DTGMLRSRPRTSTGSERRSRNNTALEVLATKGSGKNAKAEETLLKKGVDALARQLRSTVREEFFGPPSESARERVKDFRAATARHTTRDAMVLGKPLSSITGSVLTNVPLAARTRGVAGDVQLENQENR--RAWGASSAKIRRKEVES-GDG-GDERGGESSAGVFW 3858
T TEEE EA LVLTELFTL EDD V SDSED H D AL AS E + E+ D + QE RSSAR +E GQTT +NSRRSQSPTTQAMET R MMNGI SS+DVASG LQESAG+VL+ L+ D+ +TER VA QLQSVQ ++S EACTWL +Q A GLDR Q E+RL +D +CLA VAKAFQD+RA IE MKE +DEMV AFDRHLEDSAAS+KQ+FRWMKRRYREK+D+NRAAS+IELKDTILLD+CILEDKTKEI DQYKE++ RLRVEFQLERSTL KQ RELEQSVEVLRLEK+QAEEDA QAHRYIEALEDGA HSEDGSVRSHKHSPRGG +S G SRHAS R GSAQ SR S HH L RQ+SLNPG SP RHAF AG GA SPRSPR AAGGH GGR S RG A G V V + Q+ A SPRG GS NTGR +AS AF+A E G NN SSRQLINP ARHEEARQRFE DVASKLM+VIEKKKLA+L+EELADE+KNREAA ARL +M Q IPKLH+DL VQ QLVQSRME NELR INTV+TTDL +A++ Q R AV +AE L DH PIG+ + S R AAG++VGA+R RQ G G E QQ+ T LRKAKEMGQWVV P E+ G EE + N+ A + REL++ LKRQ++ LE ER A A AA L SDMDD R + G K ++S A +ET ++ +++ E ENLKE+RRDLESK+AKMQVESDEN +LRRRLEAIERTTLKLNIGG +DLQILRERL+LE+AEV RLR TVA LQ +K+++ EEK LEY+++RL +FKAEFENLA+ S+NDS+S GL G G A CGDG KWKQ+AK+LQ+Y+KWQLAEAE QAQRDRAQMAL+SRSH+ILMAEM+VL +RYRRE GR EVNRTLLQ+LAEL+ Q +DH RRRKV A V GQ NP+ GR K R+ A +G GLRHHQ TLS VALVP HTIEN P VVAA A+AR++ ++++ +L E +N + R+RPRTSTG E R+RN ++++A K + + E+ LKK V+ LARQLRS VREEFFGP S+SARER KD AAT RHTTRD M+L KPLS+ITGSVLTNVPL AR V G+++ + R R+W + + GDG G RGG AG FW
Sbjct: 41 TIDATEEEKEAGLVLTELFTLGVEDD-VVSDSEDDHSDRALAASTTATEAQGPRIEEQGKDNHE--QEAQARSSARGMEGGQTTTTNSRRSQSPTTQAMETHCRMMMNGIASSVDVASGLLQESAGEVLRCLVLDVQDTERTVAEQLQSVQPELSGEACTWLKQQAARGLDRGQSQAFELRLAGIDTQCLASVAKAFQDQRAAIERRMKETIDEMVSAFDRHLEDSAASTKQNFRWMKRRYREKIDINRAASRIELKDTILLDKCILEDKTKEIRDQYKEEVGRLRVEFQLERSTLRKQCRELEQSVEVLRLEKMQAEEDALQAHRYIEALEDGAPNHSEDGSVRSHKHSPRGG--RSPRGGGHSRHAS-RNGSAQNSRHPS-HHMLQRQESLNPG-TSPS----RHAFLSAGNGASGSPRSPR--HMLAAGGHAGGRLSPRGASKGGASTLPDCQTGRGVGVGATQEAAVSPRGAGSAHNTGRXXXXXXXXXRMASGQNTGRNAFLACEDNGG--NN--SSRQLINPTARHEEARQRFENDVASKLMQVIEKKKLANLEEELADEIKNREAANARLAMMEQVIPKLHEDLKNVQAQLVQSRMETNELRKINTVMTTDLAQAASSEGQVRIRDAAAVREAETTLRDH-------PIGNAAAVAGGAPSFRHAAGAVVGAIRFSTRQLAGAGREPRAGPAQQQDTVALRKAKEMGQWVVQNPPEEHQ---EGEQEEYPVDDNDSAED---RELVSKLKRQISALEDERRAPVAGAAGLRSDMDDFRNDDGGKERAYTSGGTPNAGEETLADRRFASIKFEVENLKEVRRDLESKIAKMQVESDENSFLRRRLEAIERTTLKLNIGGVSNDLQILRERLELEAAEVSRLRGTVAALQNDKVMMTEEKASLEYDIQRLAQFKAEFENLADISINDSESNGLNGDSGTAGGAVDCGDGGKWKQRAKKLQQYIKWQLAEAETQAQRDRAQMALKSRSHEILMAEMAVLVKRYRRERGRLYEVNRTLLQQLAELDAQ------------SDHDPRRRKV-HTAGPPGVTANGQPTNPKYGRGKAREWAITGGGGLRHHQGAKVVTDTTTLSSVALVPTHTIENTPAVVAAVASARRKGPAMSASAAALLTAGEERVAGARNGGENDFSRARPRTSTGCESRARNRIGVDLVAKKRCDRRGRKEKASLKKEVETLARQLRSGVREEFFGPLSQSARERAKDMSAATKRHTTRDPMILAKPLSAITGSVLTNVPLPARVATVGGEMEPSYNQGRTSRSWSRPTRCEQNASAGGYGDGYGHHRGG---AGAFW 1317
BLAST of mRNA_H-canaliculatus_F_contig1002.52.1 vs. uniprot
Match: A0A6H5L653_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L653_9PHAE) HSP 1 Score: 923 bits (2385), Expect = 3.460e-314 Identity = 664/1326 (50.08%), Postives = 781/1326 (58.90%), Query Frame = 1 Query: 229 LESGQTTNSNSRRSQSPTTQAMETQLRTMMNGITSSIDVASGTLQESAGDVLQRLMRDLHETEREVARQLQSVQAQMSREACTWLHRQTAGGLDRALIQGLEVRLTEVDDRCLAVVAKAFQDRRAVIESGMKEIVDEMVGAFDRHLEDSAASSKQHFRWMKRRYREKVDVNRAASKIELKDTILLDRCILEDKTKEIDDQYKEDIARLRVEFQLERSTLGKQRRELEQSVEVLRLEKVQAEEDASQAHRYIEALEDGAALHSEDGSVRSHKHSPRGGGRKSVGTRGSSRHASLRTGSAQASRRSSNHHQLHRQDSLNPGGNSPRGGAPRHAFAVAGAGAGASPRSPRSPRQTAAGGHTGGRSSLRGVHHQLAGG------GAAVAVASPQDTARSPRGGGSG----------QNTGRLASXXXXXXKAFVAGEGGGSVANNIGSSRQLINPAARHEEARQRFEKDVASKLMEVIEKKKLAHLQEELADEVKNREAATARLELMSQAIPKLHKDLTRVQDQLVQSRMENNELRNINTVLTTDLVRASTLGRQDR---NTAVSDAEAILIDHAAAGDRDPIGSTKHLSLRRAAGSIVGALRLDNRQ--NGRGGEGGGAGQQQEGTAGLRKAKEMGQWVVLQPTAENAPVPHGGSEELSTNEGANEGIARELITTLKRQVTGLEQERDAAAANAAVLLSDMDDLREERGHK---HSSEEAKLAADETQTGKKMGAVRLECENLKEIRRDLESKLAKMQVESDENEYLRRRLEAIERTTLKLNIGGGPSDLQILRERLDLESAEVVRLRSTVAGLQEEKLVLAE-----------------------------------EKVDLEYELERLTKFKAEFENLAESSLNDSDSEGLKGGDGGGSAAAGCGDG-KWKQQAKRLQKYVKWQLAEAENQAQRDRAQMALESRSHDILMAEMSVLARRYRRELGRRCEVNRTLLQRLAELEGQVRPSCVRTGHFNA------------DHHHR--------------------------------------RRKVLQIAAVSTVATVGQCGNPRGGRTKTRDRAGSGRSGLRHHQRGNPAAAAPTLSPVALVPVHTIENAPEVVAASATARQRELVSASASVPMLAMVEAPTESKQN--DTGMLRSRPRTSTGSERRSRNNTALEVLATKGSGKNAKAEETLLKKGVDALARQLRSTVREEFFGPPSESARERVKDFRAATARHTTRDAMVLGKPLSSITGSVLTNVPLAARTRGVAGDVQLENQENRRAWGASSAKIRRKEVESGDGGD----ERGGESSAGVFW 3858
+E GQTT +NSRRSQSPTTQAMET R MMNGI SS+DVASG LQESAG+VL+ L+ D+ +TER VA QLQ VQ ++S EACTWL +Q A GLDR +Q E+RL +D +CLA VAKAFQD+RA IE MKE +DEMV AFDRHLEDSAAS+KQHFRWMKRRYREK+D+NRAAS+IELK +G Q E+ +ALEDGA HSEDGSVRSHKHSPRGG +S G SRHAS R GSAQ SR S +H L RQ+S NPG +S R HAF AG G SPRSPR AAGGH GGR S RG A G V V + Q+ A SPRG GS QNTGR+AS AF A EG G NN SSRQLINP RHEEARQRFE DVASKLM+VIEKKKLA+L+EELADE+KNREAA ARL +M Q IPKLH+DL VQ QLVQSRME NELR INTV+TTDL +A++ Q R AV +AE L DH G + R A ++VGA+R RQ RGG G G QQ+ T LRKAKEMGQWVV +N P H + N+ A + REL++ LKRQ++ LE ER A A L SDMDD R + G K ++S A +ET ++ ++RLE ENLKE+RRDLESK+AKMQVESDEN +LRRRLEAIERTTLKLNIGG +DLQILRERL+LE+AEV RLR TVA LQ +K+++ E EK LEY+++RL +FKAEFENLA+ S+NDS+S GL G G AA CGDG KWKQ+AK+LQ+YVKWQLAEAE QAQRDRAQMAL+SRSH+ILMAEM+VL +RYRRE R EVNRTLLQ+LAEL+ Q P TG FN H R RR ++ A VA GQ NP+ GR K R+ A +G GLRHHQ A TLS VALVP HTIEN P V L +N + R+RPRTS G E R+RN +++A + + + E+ LKK V+ LARQLRS VREEFFGP S+SARER KD AAT RHTTRD M+L KPLS+ITGSVLTNVPL A+ V +++ + R + S + +G GD RGG AG FW
Sbjct: 1 MEGGQTTTTNSRRSQSPTTQAMETHCRMMMNGIASSVDVASGLLQESAGEVLRCLVLDVQDTERAVAEQLQRVQPELSGEACTWLKQQAASGLDRGQLQAFELRLAGIDTQCLASVAKAFQDQRATIERRMKETIDEMVSAFDRHLEDSAASTKQHFRWMKRRYREKIDINRAASRIELK--------------------------------------VGGQ-----------------PGENPVCCPELSQALEDGAPNHSEDGSVRSHKHSPRGG--RSPRGGGHSRHAS-RNGSAQNSRHPS-YHMLQRQESFNPGTSSSR-----HAFLSAGNGVSGSPRSPR--HMLAAGGHAGGRLSPRGASKGGASTLPDCQTGRGVGVGATQEAAVSPRGAGSAHNTGCGIGSRQNTGRMASGQNTGRNAFTACEGNGG--NN--SSRQLINPTLRHEEARQRFENDVASKLMQVIEKKKLANLEEELADEIKNREAANARLAMMEQVIPKLHEDLKNVQAQLVQSRMETNELRKINTVMTTDLAQAASSEGQVRIRDAAAVREAETTLRDHPIENAAAVAGGAR--LFRHTASTVVGAIRFSTRQIAGTRGGPGAGPAYQQD-TVALRKAKEMGQWVV-----QNPPEEHQAEYPVDDNDSAED---RELVSKLKRQISALEDERRVPVAGAGELRSDMDDFRNDDGGKERAYTSGGTPNAEEETLADRRFASIRLEVENLKEVRRDLESKIAKMQVESDENNFLRRRLEAIERTTLKLNIGGVSNDLQILRERLELEAAEVSRLRGTVAALQNDKVMITEAAAKAQDESVPLVQVEAERVSFERKIAGLERQHQQEKASLEYDIQRLAQFKAEFENLADISINDSESNGLDGDSGTAGGAADCGDGGKWKQRAKKLQQYVKWQLAEAETQAQRDRAQMALKSRSHEILMAEMAVLVKRYRRERSRLYEVNRTLLQQLAELDAQNTPF---TGCFNPLPPYLRPLYSALFHPSRIPYLLVHICIHSAAAAVXXXXXXXXXXXXXXXXRDDEPRRGNVRTAGPLGVAANGQPTNPKYGRGKAREWANTGGGGLRHHQGAKVVTATTTLSSVALVPTHTIENTPAVAXXXXXXXXXXXXXXXXXXXXLTAGGQRVAGARNGGEHDFSRARPRTSAGCENRARNKIGADLVAKERGDRRGRKEKASLKKEVETLARQLRSGVREEFFGPLSQSARERAKDMSAATKRHTTRDPMILAKPLSAITGSVLTNVPLPAKMATVVREMEPSYTQGRTSRSRSRPTRCEENASAGGFGDGYGHHRGG---AGAFW 1239 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1002.52.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1002.52.1 >prot_H-canaliculatus_F_contig1002.52.1 ID=prot_H-canaliculatus_F_contig1002.52.1|Name=mRNA_H-canaliculatus_F_contig1002.52.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=1287bp TASQTEEETEAHLVLTELFTLEAEDDDVASDSEDGHDHALIASPATAEVRback to top mRNA from alignment at H-canaliculatus_F_contig1002:639..15611- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig1002.52.1 ID=mRNA_H-canaliculatus_F_contig1002.52.1|Name=mRNA_H-canaliculatus_F_contig1002.52.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=14973bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1002:639..15611- (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1002:639..15611- >mRNA_H-canaliculatus_F_contig1002.52.1 ID=mRNA_H-canaliculatus_F_contig1002.52.1|Name=mRNA_H-canaliculatus_F_contig1002.52.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=7722bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1002:639..15611- (Hapterophycus canaliculatus Oshoro5f female)back to top |