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Homology
BLAST of mRNA_H-canaliculatus_F_contig100.28.1 vs. uniprot
Match: D7FQ37_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ37_ECTSI) HSP 1 Score: 310 bits (794), Expect = 4.010e-98 Identity = 155/166 (93.37%), Postives = 159/166 (95.78%), Query Frame = 1 Query: 1678 GYVTEAYDDFPDYVPNMGAWGESKPGNTPEAYPADSLDLEAFWNGGAEAVDFHDIPVVDRPCFVEMKQFIDNEGLTMLPSETELLERDIQNERRARAKARKERFADEPDEDLVDDTLDDVPLGDEIEVGVIDVPPPPVDFDDSDGYDDGYDLDEGGIQGAESEGMY 2175
GYVTEAYDDFPDYVPNMGAWGESKPGNTPEAYPADSLDL+AFWNGGAEAVDFHDIPVVDRP FVEMKQFIDNEGLTMLPSETELLERDIQ ERRARAKARKERFADEPDEDLVDDTLDD+PL DEIEVGVIDVPPPPVDFDDSDGYDDGYD D G + GAES+GMY
Sbjct: 9 GYVTEAYDDFPDYVPNMGAWGESKPGNTPEAYPADSLDLDAFWNGGAEAVDFHDIPVVDRPVFVEMKQFIDNEGLTMLPSETELLERDIQTERRARAKARKERFADEPDEDLVDDTLDDLPLDDEIEVGVIDVPPPPVDFDDSDGYDDGYDPDTGDLGGAESDGMY 174
BLAST of mRNA_H-canaliculatus_F_contig100.28.1 vs. uniprot
Match: A0A6H5JNX0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNX0_9PHAE) HSP 1 Score: 307 bits (787), Expect = 3.740e-96 Identity = 154/166 (92.77%), Postives = 159/166 (95.78%), Query Frame = 1 Query: 1678 GYVTEAYDDFPDYVPNMGAWGESKPGNTPEAYPADSLDLEAFWNGGAEAVDFHDIPVVDRPCFVEMKQFIDNEGLTMLPSETELLERDIQNERRARAKARKERFADEPDEDLVDDTLDDVPLGDEIEVGVIDVPPPPVDFDDSDGYDDGYDLDEGGIQGAESEGMY 2175
GYVTEAYDDFPDYVPNMGAWGESKPG+TPEAYPADSLDL+ FWNGGAEAVDFHDIPVVDRP FVEMKQFIDNEGLTMLPSETELLERDIQNERRARAKARKERFADEPDEDLVDDTLDD+PL DEIEVGVIDVPPPPVDFDDSDGYDDGYD D GG+ AES+GMY
Sbjct: 71 GYVTEAYDDFPDYVPNMGAWGESKPGSTPEAYPADSLDLDDFWNGGAEAVDFHDIPVVDRPVFVEMKQFIDNEGLTMLPSETELLERDIQNERRARAKARKERFADEPDEDLVDDTLDDLPLDDEIEVGVIDVPPPPVDFDDSDGYDDGYDPDMGGLGEAESDGMY 236
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-01_007610.1 |
| Exons | 5 |
| Model size | 2299 |
| Cds size | 675 |
| Stop | 1 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622928627.926292-UTR-H-canaliculatus_F_contig100:45099..45220 | 1622928627.926292-UTR-H-canaliculatus_F_contig100:45099..45220 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig100 45100..45220 - |
| 1696845500.8794773-UTR-H-canaliculatus_F_contig100:45099..45220 | 1696845500.8794773-UTR-H-canaliculatus_F_contig100:45099..45220 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig100 45100..45220 - |
| 1622928627.9944773-UTR-H-canaliculatus_F_contig100:48289..49194 | 1622928627.9944773-UTR-H-canaliculatus_F_contig100:48289..49194 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig100 48290..49194 - |
| 1696845500.9337091-UTR-H-canaliculatus_F_contig100:48289..49194 | 1696845500.9337091-UTR-H-canaliculatus_F_contig100:48289..49194 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig100 48290..49194 - |
| 1622928628.004518-UTR-H-canaliculatus_F_contig100:49222..49820 | 1622928628.004518-UTR-H-canaliculatus_F_contig100:49222..49820 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig100 49223..49820 - |
| 1696845500.946179-UTR-H-canaliculatus_F_contig100:49222..49820 | 1696845500.946179-UTR-H-canaliculatus_F_contig100:49222..49820 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig100 49223..49820 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622928627.9411407-CDS-H-canaliculatus_F_contig100:45220..45397 | 1622928627.9411407-CDS-H-canaliculatus_F_contig100:45220..45397 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig100 45221..45397 - |
| 1696845500.891476-CDS-H-canaliculatus_F_contig100:45220..45397 | 1696845500.891476-CDS-H-canaliculatus_F_contig100:45220..45397 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig100 45221..45397 - |
| 1622928627.9515204-CDS-H-canaliculatus_F_contig100:46288..46392 | 1622928627.9515204-CDS-H-canaliculatus_F_contig100:46288..46392 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig100 46289..46392 - |
| 1696845500.8993204-CDS-H-canaliculatus_F_contig100:46288..46392 | 1696845500.8993204-CDS-H-canaliculatus_F_contig100:46288..46392 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig100 46289..46392 - |
| 1622928627.966875-CDS-H-canaliculatus_F_contig100:47436..47568 | 1622928627.966875-CDS-H-canaliculatus_F_contig100:47436..47568 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig100 47437..47568 - |
| 1696845500.907306-CDS-H-canaliculatus_F_contig100:47436..47568 | 1696845500.907306-CDS-H-canaliculatus_F_contig100:47436..47568 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig100 47437..47568 - |
| 1622928627.981423-CDS-H-canaliculatus_F_contig100:48027..48289 | 1622928627.981423-CDS-H-canaliculatus_F_contig100:48027..48289 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig100 48028..48289 - |
| 1696845500.921113-CDS-H-canaliculatus_F_contig100:48027..48289 | 1696845500.921113-CDS-H-canaliculatus_F_contig100:48027..48289 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig100 48028..48289 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig100.28.1 >prot_H-canaliculatus_F_contig100.28.1 ID=prot_H-canaliculatus_F_contig100.28.1|Name=mRNA_H-canaliculatus_F_contig100.28.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=225bp
MLRSFFKIFVNYSPPMNMGVSIMKKVPFRMNKCNGTYTRNTAVRIIPHTN
TPISRRSWGYVTEAYDDFPDYVPNMGAWGESKPGNTPEAYPADSLDLEAF
WNGGAEAVDFHDIPVVDRPCFVEMKQFIDNEGLTMLPSETELLERDIQNE
RRARAKARKERFADEPDEDLVDDTLDDVPLGDEIEVGVIDVPPPPVDFDD
SDGYDDGYDLDEGGIQGAESEGMY* back to topmRNA from alignment at H-canaliculatus_F_contig100:45100..49820- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-canaliculatus_F_contig100.28.1 ID=mRNA_H-canaliculatus_F_contig100.28.1|Name=mRNA_H-canaliculatus_F_contig100.28.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=4721bp|location=Sequence derived from alignment at H-canaliculatus_F_contig100:45100..49820- (Hapterophycus canaliculatus Oshoro5f female)
GCCCACCAATCTGGTCAGCGAAGGCACAGACGGGCAGCTCTTATGCAGCA
GTATCGTAATACGCGGAGAAAGTTGACGCATAGCCAAGGCGAGTGGAATG
GTAGGGAAAATCATTTTCGAGATACAGGATCGATCGTGAAATCGGGGACA
CACAGAAGTCAACCCCACGCGCAACGGCGGCTGTACACTGAAACGCTTCC
ATGGACGCCGATTGTTTATGGTTGACGAAAAGCTTCGACCAACTCCTCAA
GTTAGCCAGGAGTTCGAGGTACACGAGAGGAGTTGTCCGCTGTCCTGTGG
GCTGCAGGCCACAGCTGGCTTCGCCATTTGTGCAGCCTTATGGTTTGATG
AAAAATAATTGGCGTTTTACACCCATGTTTATGGTCTCAGAATCTTACAA
AGATATCTTGCAAGATTTTCGTTCCACTTTGTGTTGGAGGAAAACTTCGC
GGAATTCTTCTCCACGATTTTCATGTCGTTCGAAATCGGCCATTTCGAGC
AAATCCTCGGCCAAGATGCGCTTTTCCGGCACCTCGTGAAAATATTGTCA
AGAGGCGGCGAGATTGTGTTGCTCTGTAGACTGCAGTCCACAACACTCGT
CGTTCCACCCCCACTACTCAACGCAGCGAGCTCGTAAAGGGCTCCGGACA
ACCCTAAATACTTTATCCCAGCATATCAGCCGCTGTGGCGTGGCGGGAGC
TCGTCAGTCGTGCGGAAACTACGCATTTGGGGAGGGTGGCTTGGGGAAAG
AGGAATCGTGTTCATTTGCGGCTCCAACCAGCGAAGAGTTCGCTGTTTGC
TTGTAGACGACACCATACCGCCACTCAGTCCTCACCCCCTAGCCCATGTA
TTCATACCAAACCTCCTGCGTTATCCTCTGCAGAGATGTGTCTCATCCGG
GCGCGCGAGTGTTGGCATAGGGTACCACCAATCGGCAGAGAGACGCGCGT
TCCGTGTACTCAATGTGTGCTGTTGGTTCCTCTTTGAAGCGGGTGAACAT
CTGTGGCTCTAGAGCGAAGTAGGAAAAAAACCCGATCCCATCACGTGCAC
GTGACATCTTCCAATCTTCCAGTACACAAGGCATGCGTCTCCCCGCTGAT
TGAAGAAGCCAACTGCTGATCTACGCCCACCCAGATCAGAAACGCTCGCG
GAAGTGATAGCGAAGGAGGTTCCACGTAAATGCGCATTCTCAAAAGACGA
GAGCGGGCGTGCGATGTAGAGTTGTCTCCTCTCCGGCAGATTCTCTTTTT
CCGTCGGGTTTCGAAATGTACTTCTACTGCTGAAGACACTTTGGTTTGCA
TGACTGGCGTGCATTTACTACTGCGAACGGCCAACACTTCGCAAGACGGT
ATGTTCAGGAGTGTCCGGAGGTCTTTTCGGGCTGCCTACATCCACAGTTC
ATGGCGCATCCGTAGTTACTGTACCATATGTCGTTGACAACCCTTAGACC
AAATTCCGCCGCCTGCTCGAACGTTTGAGATATCAACGATTTTTCTCCCA
AAGTAGCCGGAACGAAATCTTCGCTTGCAAAATGTTAAGATCATTTTTCA
AGATATTTGTGAATTATTCACCCCCCATGAACATGGGTGTTAGTATTATG
AAAAAAGTTCCCTTCCGCATGAACAAGTGCAACGGAACCTATACTCGCAA
CACTGCTGTGCGCATCATCCCCCATACGAACACGCCCATTTCGCGCCGCA
GTTGGGGGTACGTAACGGAAGCCTACGACGACTTCCCAGACTACGTGCCC
AACATGGGCGCTTGGGGGGAATCGAAGCCAGGAAACACTCCTGGTGAGAG
TTATGGAAATAACCATGTGTCCATGAACGTATGCATGAGCTAGGGATATG
AAAGAACACGTGCAAGAAAGATGGGAAATCGGAGCAGGGGGTGAGAGGGG
AGAGGGGGACATGACGTGCAGTCCTGGTCCTGTTGTCGTGGCCTTGCCTG
CGTTGGTTTTGCGATGAAAACGGATAATAGGCGTGGTCACAATTCCATAT
CGAGCAGGGGCGCGAGTGTTGATGTGAATTTAATCTCGATGACTCTAGGT
CAAGATGAGCACAGGCGGAAAGGATGTTCCTGGATGGGCGTAGCAGCAAG
CTTGGCGGCATTTGTATCGACGTACACAAGAAAGTTTCCATGCCAACCAA
AACGGGCCACAAGCAAGTGATCTGTTCCCACGCCAGGCGCACCACAACAC
GCCTCGTTTTGACGTAGAGCAATGTATTTCCCGTGGGTCTTGGCCATTGC
AGAGGCTTACCCAGCGGACTCGCTGGATTTGGAGGCGTTCTGGAACGGGG
GGGCGGAGGCGGTTGACTTTCACGACATTCCTGTCGTCGACCGGCCTTGC
TTCGTGGAGATGAAGCAGTTCATCGACAACGAAGGTCAGTCAGCGAATCC
GTCCGGGAGGCGCTCGTGATCTTGCTAATTTTTATCGTACCGCGCGTTTT
CGACGTGGTAGGATGCTCGCGACAAATGCAGGACGCTTATGGGCCTGCGA
AGGCGCTCAAATATGGAACGCAAGTCAAATTTCGGATCCAGCCACAAGCA
GTTGCTCTTATTTCGACGCGCACATCGTGTGTAAGTAGTTGATTGTATCG
CCAGATCGCTACTACATTTCAAGTTCAGCTTCACGTGAGGGCAAGCTTCA
TGTGTGAGCTGCATGTACGCTACACATGCTGAATCCACGGCTTTCTGCAC
TGTTTAACCTGCATTCTGGTGTTGCCAGAGTTGCAAAGCAGTACAAGCGA
CTCAACAACCCAACGTCAACACCGACGGTGGCGCTAGACCTCCAAGCCCC
AACCCGCCAACCCTCGAACCATACCGTTACCCCTTTGGAACATCGCCCAC
ACGCCCACCCGTGTTTTTAAAACCTAAGACCCCTCTGCCCACGTTGAAAT
TCTCCGCTTGGAATTCGCCCCCAGACTCCCTCCCAAATACTTTTGGCCAT
GACCTCGCTACCCGGTCACCATGGGTCGAATGGACATCGAATCGACAGTC
CAGCAATAAAAGTTCACTCCCTACCCGACTCTTTCACAAACCCCGATAAC
CGGTCAGCAGTGCTCCGTGTTGTTGTAGATAGCAACGCCAACGTTCACGT
TGATTGGTAGCTATTGGCGTGGAAAAATAAGAAGCCACGTGGGTGGAGCG
GAGTCGGTTCGATCAGGAAGAACGCAAGTGGTGGCCTCGTTCCCGTGGGC
AGTGCAAGTTTGTTGAAGTGTTGTGTCGCTTTTTTCACGCTTGGGCTCAT
CAGGACGAGGGATCACTCCTCCAAAAGCGACGGCGACCGTCAACGGCCCG
GGGAGCTATCAAGTTTGAGTCGCCATCGCTTGCCTGGCTAGCGTGCGAAA
TCAGAAAGAATGCTGTGCGGCGCTCACCAGTTGGACGTTCCGTGTTTTTT
CTGCCCCACACACGTGACGAAAGCACAGGCCTTACGATGCTGCCGTCAGA
GACGGAACTGTTGGAGCGTGATATCCAAAACGAGCGAAGAGCTCGGGCGA
AAGCTAGGAAAGAGCGCTTCGCTGATGAACCGGTGAGTGCGCGGTGGGGG
CTACGTGAGGTGCTTGCGTTCAGCGGGATCCCGATAGGCTGATGCAGCCG
GCGAGCTTTCTACCTTATACTCCAATAAGTGTAGTTCGCTTATCGGGCCG
CGATTGCTGTGCGTGGTGTACAAGTAGGGCTTTCACTTCCCTAATGGAAC
GGGCTCGATATGTCCTACAAGGCTGTCGAGTCGGTAGGGTGGGTTGTTGG
CCGACAGAGCAACATCCTGGCCGTCTTGGCCTTGCATATACTTGCCTTTG
ATTGAATGCCCGGATTGTAAATCGAAAGGGCCAGGGAGCACGCTCTGTTT
ATCCGCATGGAGCTACCTTGCCTGACCCTTATCCGCTATTGCGACGCAGT
AAGCGGAGTGATGCATCTTGCGGGCACCTGACGACAGTGGTTGAGGTATC
AATATTTCACCCGATACTTCAACGAAGTCAAGCCTCAAATAGATCACGTT
TACCAGTCGGCATGTTGTCTGCGCTTCGCGTAAGCCGCGCAATAAGTCTA
AACCTTCTCCCGAGCCGCCCCTCGCTGAATTCTCGATTTTCTCTTTTTCA
GCCGAAATGTATTTTCGATACGAGTGAAACCCCCATGCCTGTTTCATTTG
CACCCTTCACGAGTCTCATGTGCGTAAGATACAAGCAGTAGTTTTGCAAC
GCTCTTCGGCCCCAAAACACATTACTTTCCCCTCATATCCTTGTGCGCGC
CAGACCTTGGCACGCCAAACGCCTCTCCATCCCCCCACGCTTCTTTATCT
TTTTCAATGCACCCTCTCTTGTCCGTTCGATCATCCGATGTCATCGTGTT
TTCGTGTTTCGTTTTCATGTGTGTGGTGGTGCAAACGTTCCTCGAAACGG
CGCGTGAACCACGACCGTATCAGGATGAGGACCTGGTTGACGACACACTG
GACGACGTGCCCCTGGGCGACGAAATTGAGGTCGGCGTCATCGACGTGCC
GCCACCGCCCGTCGATTTCGACGACAGCGATGGTTACGATGACGGATACG
ATTTAGACGAGGGTGGTATTCAAGGAGCTGAGAGCGAAGGAATGTACTAG
GCGAAAGCGCCGGCTCAACTTCGAGGTGATATGGTTGTAGAATCGGTTAG
CTTCTCCTTGGTTACCTCGAGGCAGCAGTTATTCCTCGCTATGCAGAACA
CTTATGATCGGTTTTGACGGG back to topCoding sequence (CDS) from alignment at H-canaliculatus_F_contig100:45100..49820- >mRNA_H-canaliculatus_F_contig100.28.1 ID=mRNA_H-canaliculatus_F_contig100.28.1|Name=mRNA_H-canaliculatus_F_contig100.28.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1350bp|location=Sequence derived from alignment at H-canaliculatus_F_contig100:45100..49820- (Hapterophycus canaliculatus Oshoro5f female)
ATGTTAAGATCATTTTTCAAGATATTTGTGAATTATTCACCCCCCATGAA
CATGGGTGTTAGTATTATGAAAAAAGTTCCCTTCCGCATGAACAAGTGCA
ACGGAACCTATACTCGCAACACTGCTGTGCGCATCATCCCCCATACGAAC
ACGCCCATTTCGCGCCGCAGTTGGGGGTACGTAACGGAAGCCTACGACGA
CTTCCCAGACTACGTGCCCAACATGGGCGCTTGGGGGGAATCGAAGCCAG
GAAACACTCCTGATGTTAAGATCATTTTTCAAGATATTTGTGAATTATTC
ACCCCCCATGAACATGGGTGTTAGTATTATGAAAAAAGTTCCCTTCCGCA
TGAACAAGTGCAACGGAACCTATACTCGCAACACTGCTGTGCGCATCATC
CCCCATACGAACACGCCCATTTCGCGCCGCAGTTGGGGGTACGTAACGGA
AGCCTACGACGACTTCCCAGACTACGTGCCCAACATGGGCGCTTGGGGGG
AATCGAAGCCAGGAAACACTCCTGAGGCTTACCCAGCGGACTCGCTGGAT
TTGGAGGCGTTCTGGAACGGGGGGGCGGAGGCGGTTGACTTTCACGACAT
TCCTGTCGTCGACCGGCCTTGCTTCGTGGAGATGAAGCAGTTCATCGACA
ACGAAGAGGCTTACCCAGCGGACTCGCTGGATTTGGAGGCGTTCTGGAAC
GGGGGGGCGGAGGCGGTTGACTTTCACGACATTCCTGTCGTCGACCGGCC
TTGCTTCGTGGAGATGAAGCAGTTCATCGACAACGAAGGCCTTACGATGC
TGCCGTCAGAGACGGAACTGTTGGAGCGTGATATCCAAAACGAGCGAAGA
GCTCGGGCGAAAGCTAGGAAAGAGCGCTTCGCTGATGAACCGGCCTTACG
ATGCTGCCGTCAGAGACGGAACTGTTGGAGCGTGATATCCAAAACGAGCG
AAGAGCTCGGGCGAAAGCTAGGAAAGAGCGCTTCGCTGATGAACCGGATG
AGGACCTGGTTGACGACACACTGGACGACGTGCCCCTGGGCGACGAAATT
GAGGTCGGCGTCATCGACGTGCCGCCACCGCCCGTCGATTTCGACGACAG
CGATGGTTACGATGACGGATACGATTTAGACGAGGGTGGTATTCAAGGAG
CTGAGAGCGAAGGAATGTACTAGGATGAGGACCTGGTTGACGACACACTG
GACGACGTGCCCCTGGGCGACGAAATTGAGGTCGGCGTCATCGACGTGCC
GCCACCGCCCGTCGATTTCGACGACAGCGATGGTTACGATGACGGATACG
ATTTAGACGAGGGTGGTATTCAAGGAGCTGAGAGCGAAGGAATGTACTAG back to top
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