Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Model size | 657 |
| Cds size | 558 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622928627.0043924-UTR-H-canaliculatus_F_contig100:34238..34337 | 1622928627.0043924-UTR-H-canaliculatus_F_contig100:34238..34337 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig100 34239..34337 + |
| 1696845500.0248418-UTR-H-canaliculatus_F_contig100:34238..34337 | 1696845500.0248418-UTR-H-canaliculatus_F_contig100:34238..34337 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig100 34239..34337 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622928627.0229044-CDS-H-canaliculatus_F_contig100:34337..34691 | 1622928627.0229044-CDS-H-canaliculatus_F_contig100:34337..34691 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig100 34338..34691 + |
| 1696845500.1016107-CDS-H-canaliculatus_F_contig100:34337..34691 | 1696845500.1016107-CDS-H-canaliculatus_F_contig100:34337..34691 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig100 34338..34691 + |
| 1622928627.040309-CDS-H-canaliculatus_F_contig100:36503..36707 | 1622928627.040309-CDS-H-canaliculatus_F_contig100:36503..36707 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig100 36504..36707 + |
| 1696845500.1333005-CDS-H-canaliculatus_F_contig100:36503..36707 | 1696845500.1333005-CDS-H-canaliculatus_F_contig100:36503..36707 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig100 36504..36707 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig100.25.1 >prot_H-canaliculatus_F_contig100.25.1 ID=prot_H-canaliculatus_F_contig100.25.1|Name=mRNA_H-canaliculatus_F_contig100.25.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=186bp
MCPTKVDDGNSSTESSRTSSYSSDDESSLDCIISNSSVIPPPSLTEDTTL
LASPEPCTQAAQVRKMTLASLLSLAIAISVGCFGICLAGLCGADDGRSGG
GQKAELKTDLDVARLPQEGKPHIWERPIRGVLRRLRDGQEGRRKRRRLES
EQENSREGPGEDMGRKSNRKKRKQNGDGSRSSGGEG back to topmRNA from alignment at H-canaliculatus_F_contig100:34239..36707+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-canaliculatus_F_contig100.25.1 ID=mRNA_H-canaliculatus_F_contig100.25.1|Name=mRNA_H-canaliculatus_F_contig100.25.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2469bp|location=Sequence derived from alignment at H-canaliculatus_F_contig100:34239..36707+ (Hapterophycus canaliculatus Oshoro5f female)
CTTGGTGCTTCCAACTTCTTCTACCACACACGCCCGACGTGAAAGCCGCG
CGCGTTGGGTGCCTGAATACGGTTGACCTCTTCCCGAGGCCTCCGTTCGA
TGTGCCCGACCAAGGTAGACGATGGAAACAGCAGCACTGAAAGCAGCAGA
ACGAGCAGCTACAGCTCGGACGATGAAAGCAGCCTGGACTGCATCATCAG
CAACAGCAGTGTGATTCCGCCGCCATCTTTGACTGAAGACACAACGTTGT
TGGCGTCTCCGGAGCCGTGCACACAAGCCGCCCAAGTACGAAAAATGACA
TTGGCGTCGTTGTTAAGCCTCGCTATTGCCATAAGCGTTGGATGCTTTGG
AATCTGCTTGGCAGGGTTGTGTGGGGCGGATGACGGCAGGAGCGGCGGGG
GGCAGAAGGCGGAGTTGAAGACTGACCTTGATGTGGCCCGACTACCCCAG
GAGGTAAGTCAGCCAGCGTCTGGTGCGGACAGCAGTACTTGGGAAACAAA
CCGCACCTGTTCGACTCGCGAACAAAGAACGAGAGTCACCCGAAGTTCAT
CATCGCCGCCGGCGAAGCCCATGTGGCGCGCTACCCACGACCTTTCGTTC
TTCATGATAATTTCCGTTTCGAAGTTGCCTTGCTGGTGCCAGCAGCGGAC
CAGGGGACGAGAGTGGAGGTTTGGGAAATCGTCCGTAGAGAGCACACGAG
ACGTTCACAGACTCCTCTCGGCAAAGTGTGCGAGCTGCTGAAGCATCTCA
GCGTCTATGAGGTAGTCTTAATGCTGCTGTTGTTCTATTATTGTATTGCC
CGCTTCCGCACGGATTTCAACTGCTGGAAATCACTCCTCTCGGCAAAGTG
CGCGAGTTGCTGAAGCATCTCAGCCTCTCTGAGATACCATTTAGTCGTCA
CTCTGCTGCTCTTTTTTCATCTACTGTAGTCCTCGATTCCGGACGGATTT
CAACTGCTGGAAATCACTCTATATGGCTCATCGCTCTGTCATCGCACCAC
TCCCATCCTCTGGTCAAGTTTGTCTTCATACGCTACCTGCCCGTTCGGGG
CGAACTCTGTCGTGATGCCGACGCAGTTGTCGAAGGCGTTGTGGCGTGTG
GTGGGAAGGCTTCGGTTTTGTTCCTGATGTGGGAAAACATGTCAATCATC
GAGAGACAGCCCCAGGGGTTATCGAAGGCCCGTTTTCCGCTACAATCGCT
TCGCCTCGCGCAATCAGCACAGGGGATGATTTGAAAAGGAATTGACAAGA
GCCCTCTGGGGCAGTGTATGCCTAAGACGGTACTCCTTTAGTGTTGTTAA
CATTTTTTCAAAAAATCATGTAGCCCGTCCGATCCTCTACAAGTCTACTG
CTTCGCCAAATGGCTCGTACAGACCGTTCATACATCCAAAATGCCGCTAT
ATGCCAGGCGGGAGACTTTCAACTTGGAATTTGTTTTCAACTCGTAACCA
AAACCACGAAGGGCAATTAGTTTGCGGGGACGTGACGAACGACAAGGGCA
CCAGTAGACACGTCCCTAGAATCCAAGGGGCTAGAACAGCGCATGACTCA
ACAACGGGTTTCAAAGATAGGTCTCGAACAAGGTGGACCAGACTTGTTGA
ATACCATGTGGAAGAATGGCGTTTTTCTGTTGAGTGAACCACCTTCCTTA
GCATTGGCGAGACGAAGAGCTTGATGGTTGTACAGAAGAGCTCAGCGCTG
GTCTGCAGGGGTCTCCCGGGATCGGCTTAATATGTTGAGCACACGAACCA
CGGTGGACATGGTTGCCCTCTGGAGTACCGGGGGCGAGCGGGCTTGTCTT
TCGAATTGTTGCTGGCCTCTCTTCGGCCGCCGGCAATTCGATACTCATCC
AAGGAAGATCCCTTCACCCATGTGTCAAACCCCAAAGTTCGACCCCCCTC
CAAGCCAAAGGCATAGCAGGGTAGTGTTTTATGTTTTGCCTCTACGCTAA
TACCCTGAACGATCCGGCGGCCTTCTATTCGTCACCTCATGCTCGCGCAC
GTATGATACAGGCGACATAGCCGTCGAGCAGGGTACTTATACCAGTAAAC
ACCGAAAGAAACAGAATGCTGATGTTCCGTTCACGCCAACCTTCGTCCAT
GACTTGAACTTGATCATCGAATTTCCAGAAAGTATCTCCAGCCATGTGCC
TGCGGCTCTTCTAGTACATGTGAGACCGACTCAAATTATGAGACTCGAGG
TCCTTTGCGTTTCAGTCTCTCCTTTTCTGCTTCACTTTCTTGTTAATGCT
TGCTTTTGTCAACAGGGAAAGCCCCACATCTGGGAGCGACCGATTAGAGG
CGTCCTCCGGAGGTTGCGGGATGGGCAGGAAGGCAGGAGAAAGAGACGAA
GGCTCGAGTCAGAACAGGAGAACAGCAGGGAGGGGCCCGGCGAAGACATG
GGCAGAAAAAGCAACCGTAAGAAGAGAAAACAAAACGGCGACGGCAGCAG
GAGCAGCGGAGGCGAAGGA back to topCoding sequence (CDS) from alignment at H-canaliculatus_F_contig100:34239..36707+ >mRNA_H-canaliculatus_F_contig100.25.1 ID=mRNA_H-canaliculatus_F_contig100.25.1|Name=mRNA_H-canaliculatus_F_contig100.25.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1116bp|location=Sequence derived from alignment at H-canaliculatus_F_contig100:34239..36707+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTGCCCGACCAAGGTAGACGATGGAAACAGCAGCACTGAAAGCAGCAG
AACGAGCAGCTACAGCTCGGACGATGAAAGCAGCCTGGACTGCATCATCA
GCAACAGCAGTGTGATTCCGCCGCCATCTTTGACTGAAGACACAACGTTG
TTGGCGTCTCCGGAGCCGTGCACACAAGCCGCCCAAGTACGAAAAATGAC
ATTGGCGTCGTTGTTAAGCCTCGCTATTGCCATAAGCGTTGGATGCTTTG
GAATCTGCTTGGCAGGGTTGTGTGGGGCGGATGACGGCAGGAGCGGCGGG
GGGCAGAAGGCGGAGTTGAAGACTGACCTTGATGTGGCCCGACTACCCCA
GGAGATGTGCCCGACCAAGGTAGACGATGGAAACAGCAGCACTGAAAGCA
GCAGAACGAGCAGCTACAGCTCGGACGATGAAAGCAGCCTGGACTGCATC
ATCAGCAACAGCAGTGTGATTCCGCCGCCATCTTTGACTGAAGACACAAC
GTTGTTGGCGTCTCCGGAGCCGTGCACACAAGCCGCCCAAGTACGAAAAA
TGACATTGGCGTCGTTGTTAAGCCTCGCTATTGCCATAAGCGTTGGATGC
TTTGGAATCTGCTTGGCAGGGTTGTGTGGGGCGGATGACGGCAGGAGCGG
CGGGGGGCAGAAGGCGGAGTTGAAGACTGACCTTGATGTGGCCCGACTAC
CCCAGGAGGGAAAGCCCCACATCTGGGAGCGACCGATTAGAGGCGTCCTC
CGGAGGTTGCGGGATGGGCAGGAAGGCAGGAGAAAGAGACGAAGGCTCGA
GTCAGAACAGGAGAACAGCAGGGAGGGGCCCGGCGAAGACATGGGCAGAA
AAAGCAACCGTAAGAAGAGAAAACAAAACGGCGACGGCAGCAGGAGCAGC
GGAGGCGAAGGAGGAAAGCCCCACATCTGGGAGCGACCGATTAGAGGCGT
CCTCCGGAGGTTGCGGGATGGGCAGGAAGGCAGGAGAAAGAGACGAAGGC
TCGAGTCAGAACAGGAGAACAGCAGGGAGGGGCCCGGCGAAGACATGGGC
AGAAAAAGCAACCGTAAGAAGAGAAAACAAAACGGCGACGGCAGCAGGAG
CAGCGGAGGCGAAGGA back to top
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