Homology
BLAST of mRNA_H-canaliculatus_F_contig10.12.1 vs. uniprot
Match: A0A6H5KTK8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTK8_9PHAE) HSP 1 Score: 141 bits (356), Expect = 2.330e-34 Identity = 133/219 (60.73%), Postives = 142/219 (64.84%), Query Frame = 3 Query: 348 MNEVVKAGVLEVTVVQALGV-------ALPRTTRRKPSLLARVTVDGTTKSGQSAQRSNHPVWFPAEPLNPRDGAASSFPPHSDARESSDGG--------GAPRKSGHSVRIFGRAMGGSGSSSGNAPSGERGEVGGSLNWARARY-GGXXXXXXXXXGAGEXXXXXXXXXXXXXXXXXXXXXXXXXX--GSVARGLLFEVREFYGPTRIVVELVSGGN 950
M+EVVKAGVLEVTVVQA GV L RT RRKP+L+ARVTVDGTTKSGQ AQRS+HPVWFPA+PLN D ASS S AR + G HS R+FGRA S+G A ER G L AR RY GG XXXXX E XXXXXXXXXXXXXXXXXXX G VARGLLFEVREFYGPTRIVVELVSGG+
Sbjct: 1 MSEVVKAGVLEVTVVQATGVDLLAATSTLSRTARRKPALVARVTVDGTTKSGQPAQRSHHPVWFPAQPLNLGDMNASSST--SRARGGTSGARNXXXXXXXXXXSVNHSARLFGRAF-----SNGTAHPPEREAANGPLGLARDRYRGGAGDGXXXXXXXSESGNPRHGXXXXXXXXXXXXXXXXXXXXXGGVARGLLFEVREFYGPTRIVVELVSGGS 212
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Model size | 953 |
| Cds size | 606 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622928625.1360447-CDS-H-canaliculatus_F_contig10:7195..7727 | 1622928625.1360447-CDS-H-canaliculatus_F_contig10:7195..7727 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10 7196..7727 - |
| 1696845498.6153228-CDS-H-canaliculatus_F_contig10:7195..7727 | 1696845498.6153228-CDS-H-canaliculatus_F_contig10:7195..7727 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10 7196..7727 - |
| 1622928625.1527586-CDS-H-canaliculatus_F_contig10:8146..8220 | 1622928625.1527586-CDS-H-canaliculatus_F_contig10:8146..8220 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10 8147..8220 - |
| 1696845498.6536477-CDS-H-canaliculatus_F_contig10:8146..8220 | 1696845498.6536477-CDS-H-canaliculatus_F_contig10:8146..8220 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10 8147..8220 - |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622928625.163817-UTR-H-canaliculatus_F_contig10:8220..8289 | 1622928625.163817-UTR-H-canaliculatus_F_contig10:8220..8289 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig10 8221..8289 - |
| 1696845498.6822412-UTR-H-canaliculatus_F_contig10:8220..8289 | 1696845498.6822412-UTR-H-canaliculatus_F_contig10:8220..8289 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig10 8221..8289 - |
| 1622928625.1792421-UTR-H-canaliculatus_F_contig10:9705..9983 | 1622928625.1792421-UTR-H-canaliculatus_F_contig10:9705..9983 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig10 9706..9983 - |
| 1696845498.69776-UTR-H-canaliculatus_F_contig10:9705..9983 | 1696845498.69776-UTR-H-canaliculatus_F_contig10:9705..9983 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig10 9706..9983 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig10.12.1 >prot_H-canaliculatus_F_contig10.12.1 ID=prot_H-canaliculatus_F_contig10.12.1|Name=mRNA_H-canaliculatus_F_contig10.12.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=202bp
MNEVVKAGVLEVTVVQALGVALPRTTRRKPSLLARVTVDGTTKSGQSAQR
SNHPVWFPAEPLNPRDGAASSFPPHSDARESSDGGGAPRKSGHSVRIFGR
AMGGSGSSSGNAPSGERGEVGGSLNWARARYGGGGGGGGGGGGAGEGGGG
GGSGGAEGSGGEDVEASDGSGGGSVARGLLFEVREFYGPTRIVVELVSGG
NG back to topmRNA from alignment at H-canaliculatus_F_contig10:7196..9983- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-canaliculatus_F_contig10.12.1 ID=mRNA_H-canaliculatus_F_contig10.12.1|Name=mRNA_H-canaliculatus_F_contig10.12.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2788bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10:7196..9983- (Hapterophycus canaliculatus Oshoro5f female)
CCTCGCCTCGCCTGACCCACTCCAAATATGAATGCGGACCCCCCGTTGAA
CTCTCCGACTCCTGCACAAGCGAAGTAGGCATGCCTCGTGTAAATGACAC
CCTGTGCTGGTGAGATCCCTCTTCTTCTTCGTGCCAGACTTCTGGGGCAC
ATGTTCTACAAGCTTGGGGCGAAGCGAGCGAGCAGGGTGCCCCGTTGGCC
ATCGAACTATTTTTGGTCGTCGTCCCGGAGGTATTAGCGGAGGAGACACC
GCCGACTTTGAAGACTCTGAAGACGCACGTGAGTCCGATACTCAGTGCTA
GGTGTGTCTTTCATCGGTCTACTGCACGGCGCTTGACCACTTGACAAGCT
TATACGAAGGGTGATACCGTTCATGAGATGATTCGCAAGTGAGGGGATCG
GCCTCATCGTTCGCTACGTGTAGCGGAGTCTCCAGGACGCTCCGCCGGAC
GGACTGCTGTACCCGATCCGGACCTCTCCGCACTCGGCTTGGGGCTTTGC
TACACCACAGCACTGGTAGTGGACCACAGACCACAGCAACCGACAATAGT
AGTGCCGCATCAACCGTTGTTTCTTTGTCGCGTCGATCACTTTCTGTCAA
CTCTCAATTGCTCAAATGAAAATCCGAAAAAGAAAAGAGAAACCGTCCGC
GATAGCGACACAACTTCTGTAGCAGCAATACAGTCGTAATGCAGATCTGT
AGACTGGACCAGACTACAAGTACAAGGTACTGTAATACTCCGAGTATCCC
GGTATCATGAACTCCTCACGCCATGGAGGGGAGTAGACCAGGTCCATGAG
AACTGAGAACTGCAATGCAATCGGAAAGTCCCCGCCACTGCTGTAGGCAA
CCCGTTTTGTAGACCACGCACCTGTCTTTCCGCCTGAGCGCATGAGGATT
CCCCAACTTTCATTAGGTGTTTGTAGACGTCGTCCTTCGCGGATTAAAGG
CACAGCTGTACCAGTGCACAGGTTACAGACAAGCCGTGCTGGTGCTCTGA
CGGAAAAGAGCAGTTCGGCTCCCGGGGTTTGCGGAGGGGGTGAAACTCGA
GTCCATCTCAGTTGTGGTGCAGTCGGAGCACGGGTAATCAGCTTGGCAAG
GGTCACTTGATACGCTGCCATGTATCAGAACGCACCATGGATTCCCCGAT
AATGTTTCCTGGAGAGCTCTTTTTGATGTATCGCGACGGATCTGTTTGGC
GGTTACGCACGTCAACTGCAGATAGGGCACGCTTGTTTGGTTCTCTTCCG
CAGCGCAGCAGAAGTACTGTACCAGGCATGCTTCTTCGTTGCTGGCAACC
CCTGCTGTAGACCGCATTTCAGGATTGGTCGCACAGCCTTCGCCAGTCAA
CTCCAAGCATACCGACAAACCTGGAACGAGTATTTGATCCAATATCCTAT
TAATTCTCTCGGGACGGGAGCACCACGGTTGGGGAAAATTTAGCTTAGAT
CTTTTTCATAACCCAGCGCGTCGGCGATGTCCTTTTTTTCTTGGCGATGA
TGTTGGTTCTGGCCTTGCGTGGATGAGCGCCGCAAATAAATCCTTGAATC
CCTTACCCAAAGGTCCACAGGCAACCAATCCTAAGCTTCTGTGTCCACAT
CTTACCGTAGGCTTTAAATCAAACGTTGCGTCTGTGGGCGGTGAAGCACC
CTCGTTTACGCCGTCTCACGCCGTCTCAACTGTCCGAAAAACAGGAGTGA
GGCACGAATCGAGTCGTCAATTCGCTCATTGGTCGTTTGGACCTCCCGAG
GGTGGATAGGAAGATGAATGAGGTGGTGAAGGCGGGCGTGCTGGAGGTGA
CTGTGGTACAGGCCCTTGGAGTGGCCCTTCCCCGAACGTGAGTGAAACCC
CCATCTTGCTTCGCACTGCCGATGGGATTTGCCCTCCGCTTCCCCGCGCA
AAAACGTCGCGGGATCGGCGTTCCCGCAGATTTTCGAAACCACACGTCTG
TACGCCGTCCGGTGCGGATCGTGCTGCTACCCCGTGGAGGACATGGAGTT
GTTTGAAAGAAAACATAACAACATCGTTGGAACACCTCATGAATTGTTTT
GTTCGATCCCTGTCCCCTTCCGACCGACCGACCGACCGACGACCAACGGC
CAAGTCGAGACGACCAACGGTCAAGCCTGCATCTTGTTCCCACCCTGCTG
GAGCCCAGCCCTGCTACTCCCATCCTGACTCTTGTCTTCTCTCCTTTCTC
CCTGTCCCTGTCTCTGGCCGCTGTTTCTGCTGTACAATTGTATCTACCCG
CCGCAGCACGCGCCGGAAGCCCTCTCTCCTAGCACGTGTCACCGTCGATG
GAACCACCAAGTCTGGACAGTCTGCGCAGCGGAGCAATCACCCGGTGTGG
TTCCCCGCGGAGCCCCTCAATCCCCGAGACGGGGCCGCGTCTTCTTTCCC
GCCGCACTCTGACGCGAGGGAGAGCAGCGACGGTGGCGGCGCCCCACGCA
AGAGCGGCCATAGTGTCCGCATCTTCGGCCGTGCAATGGGTGGCAGTGGC
AGCAGCAGCGGCAACGCTCCCTCGGGAGAGAGGGGAGAGGTCGGCGGCTC
GCTCAATTGGGCAAGAGCTCGGTACGGCGGCGGCGGCGGCGGCGGCGGCG
GCGGCGGCGGCGCGGGGGAAGGGGGCGGTGGCGGCGGCAGCGGCGGGGCG
GAAGGAAGCGGAGGAGAGGATGTTGAGGCCAGCGACGGTAGCGGAGGTGG
CAGCGTCGCACGCGGGCTATTGTTCGAGGTTCGCGAATTTTATGGCCCGA
CTCGCATCGTCGTGGAGCTAGTGTCCGGTGGGAACGGC back to topCoding sequence (CDS) from alignment at H-canaliculatus_F_contig10:7196..9983- >mRNA_H-canaliculatus_F_contig10.12.1 ID=mRNA_H-canaliculatus_F_contig10.12.1|Name=mRNA_H-canaliculatus_F_contig10.12.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1212bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10:7196..9983- (Hapterophycus canaliculatus Oshoro5f female)
ATGAATGAGGTGGTGAAGGCGGGCGTGCTGGAGGTGACTGTGGTACAGGC
CCTTGGAGTGGCCCTTCCCCGAACATGAATGAGGTGGTGAAGGCGGGCGT
GCTGGAGGTGACTGTGGTACAGGCCCTTGGAGTGGCCCTTCCCCGAACCA
CGCGCCGGAAGCCCTCTCTCCTAGCACGTGTCACCGTCGATGGAACCACC
AAGTCTGGACAGTCTGCGCAGCGGAGCAATCACCCGGTGTGGTTCCCCGC
GGAGCCCCTCAATCCCCGAGACGGGGCCGCGTCTTCTTTCCCGCCGCACT
CTGACGCGAGGGAGAGCAGCGACGGTGGCGGCGCCCCACGCAAGAGCGGC
CATAGTGTCCGCATCTTCGGCCGTGCAATGGGTGGCAGTGGCAGCAGCAG
CGGCAACGCTCCCTCGGGAGAGAGGGGAGAGGTCGGCGGCTCGCTCAATT
GGGCAAGAGCTCGGTACGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGC
GGCGCGGGGGAAGGGGGCGGTGGCGGCGGCAGCGGCGGGGCGGAAGGAAG
CGGAGGAGAGGATGTTGAGGCCAGCGACGGTAGCGGAGGTGGCAGCGTCG
CACGCGGGCTATTGTTCGAGGTTCGCGAATTTTATGGCCCGACTCGCATC
GTCGTGGAGCTAGTGTCCGGTGGGAACGGCCACGCGCCGGAAGCCCTCTC
TCCTAGCACGTGTCACCGTCGATGGAACCACCAAGTCTGGACAGTCTGCG
CAGCGGAGCAATCACCCGGTGTGGTTCCCCGCGGAGCCCCTCAATCCCCG
AGACGGGGCCGCGTCTTCTTTCCCGCCGCACTCTGACGCGAGGGAGAGCA
GCGACGGTGGCGGCGCCCCACGCAAGAGCGGCCATAGTGTCCGCATCTTC
GGCCGTGCAATGGGTGGCAGTGGCAGCAGCAGCGGCAACGCTCCCTCGGG
AGAGAGGGGAGAGGTCGGCGGCTCGCTCAATTGGGCAAGAGCTCGGTACG
GCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGCGGGGGAAGGGGGC
GGTGGCGGCGGCAGCGGCGGGGCGGAAGGAAGCGGAGGAGAGGATGTTGA
GGCCAGCGACGGTAGCGGAGGTGGCAGCGTCGCACGCGGGCTATTGTTCG
AGGTTCGCGAATTTTATGGCCCGACTCGCATCGTCGTGGAGCTAGTGTCC
GGTGGGAACGGC back to top
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