mRNA_H-paniculata_contig1964.4993.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1964.4993.1
Unique NamemRNA_H-paniculata_contig1964.4993.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig1964.4993.1 vs. uniprot
Match: D7G5J1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5J1_ECTSI)

HSP 1 Score: 150 bits (380), Expect = 2.240e-44
Identity = 65/85 (76.47%), Postives = 74/85 (87.06%), Query Frame = 1
Query:   22 IDKERSRYPYSIVWSPLPPITWFLPFIGHMGIADSRGIIYDFAGPFSINEDNMAFGSPTRYLRLDPGRCTAERWDEAVAAASETY 276
            IDK RSRYPY IVW+PLP ITWF+P IGHMGIADSRG+IYDFAGP++I ED+MAFG PTRYL LDPGRC  E+WDE+VA + ETY
Sbjct:   31 IDKARSRYPYCIVWTPLPLITWFIPLIGHMGIADSRGVIYDFAGPYTIGEDHMAFGRPTRYLPLDPGRCKGEQWDESVAHSCETY 115          
BLAST of mRNA_H-paniculata_contig1964.4993.1 vs. uniprot
Match: UPI0003F0CFAF (transmembrane protein 222-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F0CFAF)

HSP 1 Score: 127 bits (318), Expect = 7.390e-35
Identity = 53/86 (61.63%), Postives = 68/86 (79.07%), Query Frame = 1
Query:   22 IDKERSRYPYSIVWSPLPPITWFLPFIGHMGIADSRGIIYDFAGPFSINEDNMAFGSPTRYLRLDPGRCTAERWDEAVAAASETYR 279
            +DK+RSRYPYSIVW+P+P +TW  PFIGHMGI  S G+I DFAGP+ ++ED M FG+PTRYL+L+P     E WD AV++ASE Y+
Sbjct:   38 VDKQRSRYPYSIVWTPIPMLTWIFPFIGHMGICMSSGVIRDFAGPYYVSEDCMGFGNPTRYLQLNPSNTRKESWDIAVSSASEEYK 123          
BLAST of mRNA_H-paniculata_contig1964.4993.1 vs. uniprot
Match: A0A433QA57_9FUNG (Uncharacterized protein n=1 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433QA57_9FUNG)

HSP 1 Score: 124 bits (312), Expect = 9.550e-35
Identity = 51/85 (60.00%), Postives = 67/85 (78.82%), Query Frame = 1
Query:   22 IDKERSRYPYSIVWSPLPPITWFLPFIGHMGIADSRGIIYDFAGPFSINEDNMAFGSPTRYLRLDPGRCTAERWDEAVAAASETY 276
            +D E SR+PY +VW+PLP +TW LPF+GH+GIADS G+IYDFAGP++I+ D+M+FG PTRY+ +DP   TA  WDEAV   +E Y
Sbjct:   32 VDFEASRFPYCVVWTPLPFLTWILPFVGHIGIADSHGVIYDFAGPYTISVDHMSFGKPTRYVPMDPTLVTAVSWDEAVYKGAEVY 116          
BLAST of mRNA_H-paniculata_contig1964.4993.1 vs. uniprot
Match: A0A7S1G5X6_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G5X6_9STRA)

HSP 1 Score: 127 bits (320), Expect = 1.040e-34
Identity = 54/85 (63.53%), Postives = 63/85 (74.12%), Query Frame = 1
Query:   22 IDKERSRYPYSIVWSPLPPITWFLPFIGHMGIADSRGIIYDFAGPFSINEDNMAFGSPTRYLRLDPGRCTAERWDEAVAAASETY 276
            IDK RSRYPY+IVW+PLP ITW +PFIGHMGI DS G +YDFAGP+ INED MAF  PTRYL LDP + T   W++ V   +  Y
Sbjct:   76 IDKSRSRYPYAIVWTPLPLITWLIPFIGHMGICDSEGRVYDFAGPYMINEDGMAFSEPTRYLTLDPSKATRTTWNQGVDIGNMVY 160          
BLAST of mRNA_H-paniculata_contig1964.4993.1 vs. uniprot
Match: A0A553PQH1_TIGCA (Uncharacterized protein n=1 Tax=Tigriopus californicus TaxID=6832 RepID=A0A553PQH1_TIGCA)

HSP 1 Score: 125 bits (313), Expect = 1.820e-34
Identity = 57/87 (65.52%), Postives = 66/87 (75.86%), Query Frame = 1
Query:   22 IDKERSRYPYSIVWSPLPPITWFLPFIGHMGIADSRGIIYDFAGPFSINEDNMAFGSPTRYLRLDPGRCT--AERWDEAVAAASETY 276
            ID ER RYPY +VW+PLP ITWFLPFIGHMGI  S GII DFAGP+ ++ED+MAFG PTRY  LDP +    A+ WDE VA AS+ Y
Sbjct:    6 IDHERHRYPYCVVWTPLPLITWFLPFIGHMGICTSSGIIRDFAGPYHVSEDDMAFGHPTRYWPLDPNQVQGGAQAWDEGVAHASDLY 92          
BLAST of mRNA_H-paniculata_contig1964.4993.1 vs. uniprot
Match: A7RLA6_NEMVE (Predicted protein n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A7RLA6_NEMVE)

HSP 1 Score: 125 bits (314), Expect = 2.140e-34
Identity = 54/88 (61.36%), Postives = 70/88 (79.55%), Query Frame = 1
Query:   22 IDKERSRYPYSIVWSPLPPITWFLPFIGHMGIADSRGIIYDFAGPFSINEDNMAFGSPTRYLRLDPGRCTAER--WDEAVAAASETYR 279
            IDK+R RYPY IVW+P+P +TW  PFIGHMGIA S G+I DFAGP+ ++EDNMAFG+PTRYLRL+P +  +    WD +V++ASE Y+
Sbjct:   24 IDKKRHRYPYCIVWTPIPLLTWLFPFIGHMGIAMSSGVIRDFAGPYYVSEDNMAFGNPTRYLRLNPAKIASPNNGWDTSVSSASEEYK 111          
BLAST of mRNA_H-paniculata_contig1964.4993.1 vs. uniprot
Match: A0A1W0AA51_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0AA51_9STRA)

HSP 1 Score: 124 bits (312), Expect = 2.890e-34
Identity = 55/88 (62.50%), Postives = 64/88 (72.73%), Query Frame = 1
Query:   19 GIDKERSRYPYSIVWSPLPPITWFLPFIGHMGIADSRGIIYDFAGPFSINEDNMAFGSPTRYLRLD-PGRCTAERWDEAVAAASETYR 279
             ID  R R+P  IVWSPLP +TWF+PFIGHMGIADS G+IYDFAGP+SI EDN AFG PTRYL+L+ P   + E WD+ V      YR
Sbjct:    9 AIDVARDRFPLCIVWSPLPGLTWFVPFIGHMGIADSHGVIYDFAGPYSIGEDNFAFGRPTRYLQLELPEEISTEAWDDGVREGCAVYR 96          
BLAST of mRNA_H-paniculata_contig1964.4993.1 vs. uniprot
Match: A0A067BRH5_SAPPC (Uncharacterized protein (Fragment) n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067BRH5_SAPPC)

HSP 1 Score: 124 bits (312), Expect = 3.430e-34
Identity = 56/88 (63.64%), Postives = 64/88 (72.73%), Query Frame = 1
Query:   19 GIDKERSRYPYSIVWSPLPPITWFLPFIGHMGIADSRGIIYDFAGPFSINEDNMAFGSPTRYLRLD-PGRCTAERWDEAVAAASETYR 279
             ID  R R+P+ IVWSPLP ITWFLPFIGHMGI DS G+IYDFAGP+ I ED+ AFG PTRYLRL  P   +A+ WD+ V A    YR
Sbjct:   15 AIDVARDRFPFCIVWSPLPVITWFLPFIGHMGIGDSHGVIYDFAGPYHIGEDHFAFGRPTRYLRLSLPESLSADDWDDGVRAGCAIYR 102          
BLAST of mRNA_H-paniculata_contig1964.4993.1 vs. uniprot
Match: A0A7S1AN73_NOCSC (Hypothetical protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1AN73_NOCSC)

HSP 1 Score: 125 bits (313), Expect = 4.450e-34
Identity = 53/85 (62.35%), Postives = 68/85 (80.00%), Query Frame = 1
Query:   22 IDKERSRYPYSIVWSPLPPITWFLPFIGHMGIADSRGIIYDFAGPFSINEDNMAFGSPTRYLRLDPGRCTAERWDEAVAAASETY 276
            ++ +++RYPY I WSPLP ITWFLPFIGHMG+ADS GII+DFAGP++I  + MAFGSPTRYL+LDP R     WDE+++ A+  Y
Sbjct:   35 VNVDKNRYPYCITWSPLPFITWFLPFIGHMGLADSNGIIFDFAGPYTIGRERMAFGSPTRYLQLDPSRFLGN-WDESISRATADY 118          
BLAST of mRNA_H-paniculata_contig1964.4993.1 vs. uniprot
Match: A0A7M5VCK5_9CNID (Uncharacterized protein n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M5VCK5_9CNID)

HSP 1 Score: 124 bits (310), Expect = 7.080e-34
Identity = 51/88 (57.95%), Postives = 69/88 (78.41%), Query Frame = 1
Query:   22 IDKERSRYPYSIVWSPLPPITWFLPFIGHMGIADSRGIIYDFAGPFSINEDNMAFGSPTRYLRLDPGRCTAERWDEAVAAASETYRCK 285
            ++  R RYPY IVW+P+P +TWF PFIGHMGIA S G+I DFAGP+ ++ED+MAFG PTRYL+L+P +     WD+AV+AAS+ Y+ +
Sbjct:   18 VNTNRDRYPYCIVWTPIPMLTWFFPFIGHMGIAYSSGVIRDFAGPYYVSEDDMAFGKPTRYLQLNPMKVNNGDWDQAVSAASDEYKTR 105          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1964.4993.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5J1_ECTSI2.240e-4476.47Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
UPI0003F0CFAF7.390e-3561.63transmembrane protein 222-like n=1 Tax=Saccoglossu... [more]
A0A433QA57_9FUNG9.550e-3560.00Uncharacterized protein n=1 Tax=Jimgerdemannia fla... [more]
A0A7S1G5X6_9STRA1.040e-3463.53Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A553PQH1_TIGCA1.820e-3465.52Uncharacterized protein n=1 Tax=Tigriopus californ... [more]
A7RLA6_NEMVE2.140e-3461.36Predicted protein n=1 Tax=Nematostella vectensis T... [more]
A0A1W0AA51_9STRA2.890e-3462.50Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A067BRH5_SAPPC3.430e-3463.64Uncharacterized protein (Fragment) n=2 Tax=Saprole... [more]
A0A7S1AN73_NOCSC4.450e-3462.35Hypothetical protein n=1 Tax=Noctiluca scintillans... [more]
A0A7M5VCK5_9CNID7.080e-3457.95Uncharacterized protein n=1 Tax=Clytia hemisphaeri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1964contigH-paniculata_contig1964:14672..15888 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score153.7
Seed ortholog evalue4.6e-35
Seed eggNOG ortholog2880.D7G5J1
Preferred nameTMEM222
KEGG koko:K20726
KEGG Pathwayko04016,map04016
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Protein of unknown function (DUF778)
EggNOG OGsKOG3150@1,KOG3150@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons2
Model size303
Cds size303
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929488.4295557-CDS-H-paniculata_contig1964:14671..147741622929488.4295557-CDS-H-paniculata_contig1964:14671..14774Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1964 14672..14774 +
1691480883.310896-CDS-H-paniculata_contig1964:14671..147741691480883.310896-CDS-H-paniculata_contig1964:14671..14774Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1964 14672..14774 +
1622929488.4440932-CDS-H-paniculata_contig1964:15688..158881622929488.4440932-CDS-H-paniculata_contig1964:15688..15888Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1964 15689..15888 +
1691480883.3331966-CDS-H-paniculata_contig1964:15688..158881691480883.3331966-CDS-H-paniculata_contig1964:15688..15888Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1964 15689..15888 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1964.4993.1prot_H-paniculata_contig1964.4993.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1964 14672..15888 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1964.4993.1

>prot_H-paniculata_contig1964.4993.1 ID=prot_H-paniculata_contig1964.4993.1|Name=mRNA_H-paniculata_contig1964.4993.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=101bp
MNNTIYGIDKERSRYPYSIVWSPLPPITWFLPFIGHMGIADSRGIIYDFA
GPFSINEDNMAFGSPTRYLRLDPGRCTAERWDEAVAAASETYRCKRSGWE
*
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mRNA from alignment at H-paniculata_contig1964:14672..15888+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1964.4993.1 ID=mRNA_H-paniculata_contig1964.4993.1|Name=mRNA_H-paniculata_contig1964.4993.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1217bp|location=Sequence derived from alignment at H-paniculata_contig1964:14672..15888+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAACAACACTATATATGGCATTGACAAGGAGAGGTCGAGGTATCCCTA CAGCATTGTTTGGAGCCCGTTACCTCCCATCACGTGGTTTCTTCCTTTCA TAGGTGTGCGGTCTTATGCTTGCGAAGCAGTGGCGTGTTGTAGTGGCGCA TGGAGATCTCTCTGTAAGCTGTTTGTTCACAATTATATGGATTGATTGAT GTTGCAGGTGTCGTTCTGCATTGTCTGCTGGTCATAGTATAGGTCACTGT ACGATACGTAACAACGGACTATACTGTAACTGATATAGACTTGCTCTAAA TCTACTGTGTTGTAGTTCGCTTCACTGTAACTTGTACTCCTATTACAGTA CGTCGTGTAGTACCGGAGGTGCTCAGCCATGAGAATGGGGATGAAATGCG TGAAAGTCAAACTTTGTGTGTGCAGACAAAATAAAAAGGGCTGTGTATCC ACGTATATCCACTCTTGGCTTATTTTCTCCCTCCGCGTCGGCAACAGTCA ATCCGTTGCCGCGATGTCAACCAGACTTCTCCATTGGCCGCGCAGTCAAC TGGAGCGCGCCGAGCCGTGGCAATCGTTTCTCTTCCCGGTCATTGAGCGC CCTAATGCACTCGTTTCATTCTGGCTTTTCCTATCAAACCAACTTGACCT CTTTGTAGCACCGGAGGCTTATTGGAACAAAAATGGCATCCGATAACAAC TGTCGAGAACTGCAATCGTAGTGGGCAAAACCATGCATGCCAACTATCAC CTGCCTGCGCCTGTATTCACCATGTGTAGCGGACTGTCTATCTGAACAGC GGTAGCTCCCTGTCCGCGTAGCCGTGCCATAAGGATTGAGAGACATACGT AAGGGATTCGACGGGGACTACTGTAGATGGGACCTGGCGCTCAAAGTGCC CTATCAAACGCGTATCCGTTTCCCTGTACATGTGAAAAAAACACCCTGGA ACTAAGCGTGGCTACGTGTACTCCCCCCGCGCCCGCCGCTGCCGCCATCG TTGCCGCGTGCGCACAGGTCACATGGGTATCGCCGATTCTCGCGGAATCA TCTACGATTTCGCGGGTCCATTTTCCATCAACGAAGACAACATGGCTTTC GGCAGCCCCACGCGATACCTGCGGCTCGACCCGGGGCGCTGCACGGCTGA GCGTTGGGATGAGGCTGTCGCCGCCGCATCAGAGACGTACAGGTGCAAGC GAAGCGGCTGGGAGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig1964:14672..15888+

>mRNA_H-paniculata_contig1964.4993.1 ID=mRNA_H-paniculata_contig1964.4993.1|Name=mRNA_H-paniculata_contig1964.4993.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=606bp|location=Sequence derived from alignment at H-paniculata_contig1964:14672..15888+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAACAACACTATATATGGCATTGACAAGGAGAGGTCGAGGTATCCCTA
CAGCATTGTTTGGAGCCCGTTACCTCCCATCACGTGGTTTCTTCCTTTCA
TAGATGAACAACACTATATATGGCATTGACAAGGAGAGGTCGAGGTATCC
CTACAGCATTGTTTGGAGCCCGTTACCTCCCATCACGTGGTTTCTTCCTT
TCATAGGTCACATGGGTATCGCCGATTCTCGCGGAATCATCTACGATTTC
GCGGGTCCATTTTCCATCAACGAAGACAACATGGCTTTCGGCAGCCCCAC
GCGATACCTGCGGCTCGACCCGGGGCGCTGCACGGCTGAGCGTTGGGATG
AGGCTGTCGCCGCCGCATCAGAGACGTACAGGTGCAAGCGAAGCGGCTGG
GAGTAGGTCACATGGGTATCGCCGATTCTCGCGGAATCATCTACGATTTC
GCGGGTCCATTTTCCATCAACGAAGACAACATGGCTTTCGGCAGCCCCAC
GCGATACCTGCGGCTCGACCCGGGGCGCTGCACGGCTGAGCGTTGGGATG
AGGCTGTCGCCGCCGCATCAGAGACGTACAGGTGCAAGCGAAGCGGCTGG
GAGTAG
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