mRNA_H-paniculata_contig19575.4961.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19575.4961.1
Unique NamemRNA_H-paniculata_contig19575.4961.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19575.4961.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19575contigH-paniculata_contig19575:1036..3735 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1353
Cds size1350
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929484.4219644-CDS-H-paniculata_contig19575:1036..22391622929484.4219644-CDS-H-paniculata_contig19575:1036..2239Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19575 1037..2239 -
1691480881.79684-CDS-H-paniculata_contig19575:1036..22391691480881.79684-CDS-H-paniculata_contig19575:1036..2239Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19575 1037..2239 -
1622929484.4386015-CDS-H-paniculata_contig19575:3588..37351622929484.4386015-CDS-H-paniculata_contig19575:3588..3735Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19575 3589..3735 -
1691480881.8067017-CDS-H-paniculata_contig19575:3588..37351691480881.8067017-CDS-H-paniculata_contig19575:3588..3735Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19575 3589..3735 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19575.4961.1prot_H-paniculata_contig19575.4961.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19575 1037..3735 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19575.4961.1

>prot_H-paniculata_contig19575.4961.1 ID=prot_H-paniculata_contig19575.4961.1|Name=mRNA_H-paniculata_contig19575.4961.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=450bp
ITELALDEQGEGAMRIQYSLRRTDQRRERTLRLRDEWNQLAIPSSLTEEQ
ISRGETLHGNALDSSKRYFRPSSSSSSSSSAAAAASSSSARRRSRSSSFS
RYTSAAGTEAAAAEGAKEGGGGIGGDQDRERSRGRAARSRSHSRHRSMST
SEGGRSREGSGTRRVSREGSRSKTPGRSGREGDKDTNGRGRSGEGSRGRR
KRDGSKGRGGSDRSRDREIGESAAGHDRREDGSRGRTKEGNPSKSSAQGG
GSGRVGDADGGGGNGDGGDRERSDRSPGCTSKSDSASSSSTTRHHSAGGG
ETRMTESGGKASVSKTTQIPLAAEAAQGAMTADEGRTSSSDSLRSGEAHR
RSSSSTSNRSSRARTNGLPSATTTGKGSGSSAGGSSVSHGGSGSGAHGGG
GSGSSRRGVERHAPASPLRSSPAVASGTTASDELNRGGSKPVPAGAGVDG
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mRNA from alignment at H-paniculata_contig19575:1036..3735-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19575.4961.1 ID=mRNA_H-paniculata_contig19575.4961.1|Name=mRNA_H-paniculata_contig19575.4961.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2700bp|location=Sequence derived from alignment at H-paniculata_contig19575:1036..3735- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATAACGGAACTAGCCTTGGATGAGCAGGGAGAAGGAGCGATGCGGATCCA
GTATTCGTTACGCCGTACGGATCAGCGCCGAGAGCGGACCTTGCGCCTGA
GGGACGAGTGGAACCAGCTGGCTATACCTTCTTCACTCACGGAAGAGGTA
CAAACCCAAACCCAAACCCAAACACATAACTATAGTACCGGCTGACTTAT
AACGAACAGGGCCGTAGGAAAAGGCACGCGTGATGAGATTTTGGAAAATT
GACGAAATTGGCTATTTCTTACGGGCCTCGGAAAGAAATTTGCGTTTTTG
AGGCCTTTGGATTGTTCTCTTCACTTGCCTAGCTATATTTTGAAAAATCT
AAAATCCTGGGATGATCACTGGACCACGGGACGGGATGGGACACGGGACT
GTCCTGTGAAAATTTACACGTGGTTAGTGTATAGGTTCCGTAACATCACG
CTACGAGACAGGACAAGACAGGATAGGACGGCACAACCGTCCCGTGAGGG
CCCCACGGTCGCGTGATGACCTCTACAGAAGTCAAGAATCCGGCGCAATA
ATCCGATGCCCAGTAGAAACGGCCTAACCCTGGGAGGCGTATGTCGCAAT
TGGGAAGAGCGTGATGACAAGAGAGTGCTCCCGCGCTTCGCTTTAACAGG
AACAGCACAGAACATAGGACTGATGGACAGTTCTTTTGACGACTGGGTCG
GTACCGTGGGTTCCTTTTCCGGTTGCGAGTATACTGTTGAAGGGGGGCAA
AAGGGACGCTGCTGGCTGTACTTTTTGTGTGTACCTCGCATGTTTTGAAG
AGAACCACGTCAACGGTTTCACGCGGGAGTAGTAGCGCTGTTTGATGAAA
ACAAAAAAACAAAAAATAAATTTCACAACTGAGTTATTAGGCGCTGCAGC
ATTAATGCGCCAAAATCACGACAGCTTCCTGTCTATACCGTACGTACTCT
GTGTGGTAGTGGCTGTGTGAACAGCGGCGGCTCCAACTTGCAAAAAATTT
CGGCGAACGGCAGATGGGTTGCTTTTCCTGTTATTCAGGTAGGGATTAGA
TGGAGGATTTTTTTAATGGGTATTGGTACTAAGAGAGTGGAGGTATAAAA
TGCACCGCGTATACGAAGAAGTTACGGAACACGTGTGTTTGCTCTCATTG
AGCTCGAGGAAACGGTACAAGAAGAAAAATGGTTTGTGCTTGCTATGTAC
GTCAACAGCATTTCACAGGCATGATACGGTCCTTGGTTTCGAGAATGCCG
AGTTCGAAAGTAATTTCTCGAAGGGATGAACTGGGCGACGTTTACCCCTC
TCCCCCACCCGTCCCCCAAACACCGCGCGTCCCTTGCACATGTTTCTTGC
GCCAGGTACGTGTTGAACCAAAATCGGGACTGTCCGATGATGTGACACGA
ATGTGAGTACGAATGTGCCATTTCCCTCTTATTCCCTATTCATTTCCCTC
TTTTCTCCGCGGATTTTTTGGCTCTTTCCACTCTGTCAACACACAGCAAA
TATCTCGCGGAGAGACCCTCCACGGCAACGCGCTGGACTCCAGCAAGCGG
TACTTTAGACCCTCCTCCTCCTCCTCCTCCTCCTCCTCTGCTGCTGCTGC
TGCTTCGTCGTCGTCTGCACGACGCCGGAGTAGATCGTCATCGTTCTCGC
GCTACACCTCGGCGGCGGGGACAGAAGCGGCAGCGGCAGAGGGAGCGAAA
GAAGGCGGCGGCGGAATTGGGGGTGACCAAGATCGCGAGCGAAGTCGAGG
GCGAGCTGCAAGGAGCCGCAGCCACAGCCGCCATCGCAGCATGTCGACTT
CAGAGGGTGGTAGGTCTAGGGAAGGTAGTGGCACGCGTCGAGTGAGCAGA
GAAGGTTCTCGCTCGAAGACGCCCGGACGTAGCGGAAGGGAAGGCGACAA
GGACACCAACGGCCGGGGGCGGAGCGGAGAAGGGAGCCGCGGGAGGCGCA
AGAGGGACGGTAGCAAAGGGCGAGGAGGGAGTGACCGGAGCCGAGATCGC
GAAATAGGCGAAAGCGCTGCCGGGCATGACCGGCGCGAGGACGGCAGCCG
GGGACGTACTAAGGAGGGCAATCCCAGTAAAAGTAGCGCGCAGGGCGGGG
GTAGCGGTCGCGTGGGAGATGCTGACGGCGGCGGCGGCAACGGCGACGGT
GGTGACCGAGAACGGAGTGATCGATCCCCAGGTTGTACATCGAAAAGCGA
CAGCGCGAGTAGTAGCAGTACCACCCGGCATCACAGCGCGGGGGGAGGGG
AGACGCGAATGACGGAGAGCGGCGGAAAAGCTAGCGTGTCGAAGACAACA
CAGATTCCGCTGGCGGCGGAGGCGGCACAGGGCGCTATGACCGCAGACGA
GGGCAGGACATCATCATCGGATTCTCTTCGTTCAGGAGAAGCACATCGTC
GCAGTAGTAGTAGTACTAGTAACCGGTCGTCGCGTGCGCGGACCAATGGT
CTCCCTTCTGCCACCACCACAGGTAAAGGGAGTGGTAGTAGTGCTGGTGG
TTCAAGTGTCAGCCATGGCGGCAGCGGCAGCGGCGCCCACGGTGGCGGCG
GTAGTGGCAGCAGCCGACGAGGCGTGGAACGCCATGCCCCGGCGTCGCCT
TTGCGGAGCTCGCCGGCGGTCGCGAGCGGGACGACTGCAAGCGACGAGTT
GAATCGTGGAGGTTCCAAGCCGGTGCCGGCCGGGGCTGGTGTTGACGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig19575:1036..3735-

>mRNA_H-paniculata_contig19575.4961.1 ID=mRNA_H-paniculata_contig19575.4961.1|Name=mRNA_H-paniculata_contig19575.4961.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2700bp|location=Sequence derived from alignment at H-paniculata_contig19575:1036..3735- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATAACGGAACTAGCCTTGGATGAGCAGGGAGAAGGAGCGATGCGGATCCA
GTATTCGTTACGCCGTACGGATCAGCGCCGAGAGCGGACCTTGCGCCTGA
GGGACGAGTGGAACCAGCTGGCTATACCTTCTTCACTCACGGAAGAGATA
ACGGAACTAGCCTTGGATGAGCAGGGAGAAGGAGCGATGCGGATCCAGTA
TTCGTTACGCCGTACGGATCAGCGCCGAGAGCGGACCTTGCGCCTGAGGG
ACGAGTGGAACCAGCTGGCTATACCTTCTTCACTCACGGAAGAGCAAATA
TCTCGCGGAGAGACCCTCCACGGCAACGCGCTGGACTCCAGCAAGCGGTA
CTTTAGACCCTCCTCCTCCTCCTCCTCCTCCTCCTCTGCTGCTGCTGCTG
CTTCGTCGTCGTCTGCACGACGCCGGAGTAGATCGTCATCGTTCTCGCGC
TACACCTCGGCGGCGGGGACAGAAGCGGCAGCGGCAGAGGGAGCGAAAGA
AGGCGGCGGCGGAATTGGGGGTGACCAAGATCGCGAGCGAAGTCGAGGGC
GAGCTGCAAGGAGCCGCAGCCACAGCCGCCATCGCAGCATGTCGACTTCA
GAGGGTGGTAGGTCTAGGGAAGGTAGTGGCACGCGTCGAGTGAGCAGAGA
AGGTTCTCGCTCGAAGACGCCCGGACGTAGCGGAAGGGAAGGCGACAAGG
ACACCAACGGCCGGGGGCGGAGCGGAGAAGGGAGCCGCGGGAGGCGCAAG
AGGGACGGTAGCAAAGGGCGAGGAGGGAGTGACCGGAGCCGAGATCGCGA
AATAGGCGAAAGCGCTGCCGGGCATGACCGGCGCGAGGACGGCAGCCGGG
GACGTACTAAGGAGGGCAATCCCAGTAAAAGTAGCGCGCAGGGCGGGGGT
AGCGGTCGCGTGGGAGATGCTGACGGCGGCGGCGGCAACGGCGACGGTGG
TGACCGAGAACGGAGTGATCGATCCCCAGGTTGTACATCGAAAAGCGACA
GCGCGAGTAGTAGCAGTACCACCCGGCATCACAGCGCGGGGGGAGGGGAG
ACGCGAATGACGGAGAGCGGCGGAAAAGCTAGCGTGTCGAAGACAACACA
GATTCCGCTGGCGGCGGAGGCGGCACAGGGCGCTATGACCGCAGACGAGG
GCAGGACATCATCATCGGATTCTCTTCGTTCAGGAGAAGCACATCGTCGC
AGTAGTAGTAGTACTAGTAACCGGTCGTCGCGTGCGCGGACCAATGGTCT
CCCTTCTGCCACCACCACAGGTAAAGGGAGTGGTAGTAGTGCTGGTGGTT
CAAGTGTCAGCCATGGCGGCAGCGGCAGCGGCGCCCACGGTGGCGGCGGT
AGTGGCAGCAGCCGACGAGGCGTGGAACGCCATGCCCCGGCGTCGCCTTT
GCGGAGCTCGCCGGCGGTCGCGAGCGGGACGACTGCAAGCGACGAGTTGA
ATCGTGGAGGTTCCAAGCCGGTGCCGGCCGGGGCTGGTGTTGACGGGCAA
ATATCTCGCGGAGAGACCCTCCACGGCAACGCGCTGGACTCCAGCAAGCG
GTACTTTAGACCCTCCTCCTCCTCCTCCTCCTCCTCCTCTGCTGCTGCTG
CTGCTTCGTCGTCGTCTGCACGACGCCGGAGTAGATCGTCATCGTTCTCG
CGCTACACCTCGGCGGCGGGGACAGAAGCGGCAGCGGCAGAGGGAGCGAA
AGAAGGCGGCGGCGGAATTGGGGGTGACCAAGATCGCGAGCGAAGTCGAG
GGCGAGCTGCAAGGAGCCGCAGCCACAGCCGCCATCGCAGCATGTCGACT
TCAGAGGGTGGTAGGTCTAGGGAAGGTAGTGGCACGCGTCGAGTGAGCAG
AGAAGGTTCTCGCTCGAAGACGCCCGGACGTAGCGGAAGGGAAGGCGACA
AGGACACCAACGGCCGGGGGCGGAGCGGAGAAGGGAGCCGCGGGAGGCGC
AAGAGGGACGGTAGCAAAGGGCGAGGAGGGAGTGACCGGAGCCGAGATCG
CGAAATAGGCGAAAGCGCTGCCGGGCATGACCGGCGCGAGGACGGCAGCC
GGGGACGTACTAAGGAGGGCAATCCCAGTAAAAGTAGCGCGCAGGGCGGG
GGTAGCGGTCGCGTGGGAGATGCTGACGGCGGCGGCGGCAACGGCGACGG
TGGTGACCGAGAACGGAGTGATCGATCCCCAGGTTGTACATCGAAAAGCG
ACAGCGCGAGTAGTAGCAGTACCACCCGGCATCACAGCGCGGGGGGAGGG
GAGACGCGAATGACGGAGAGCGGCGGAAAAGCTAGCGTGTCGAAGACAAC
ACAGATTCCGCTGGCGGCGGAGGCGGCACAGGGCGCTATGACCGCAGACG
AGGGCAGGACATCATCATCGGATTCTCTTCGTTCAGGAGAAGCACATCGT
CGCAGTAGTAGTAGTACTAGTAACCGGTCGTCGCGTGCGCGGACCAATGG
TCTCCCTTCTGCCACCACCACAGGTAAAGGGAGTGGTAGTAGTGCTGGTG
GTTCAAGTGTCAGCCATGGCGGCAGCGGCAGCGGCGCCCACGGTGGCGGC
GGTAGTGGCAGCAGCCGACGAGGCGTGGAACGCCATGCCCCGGCGTCGCC
TTTGCGGAGCTCGCCGGCGGTCGCGAGCGGGACGACTGCAAGCGACGAGT
TGAATCGTGGAGGTTCCAAGCCGGTGCCGGCCGGGGCTGGTGTTGACGGG
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