mRNA_H-paniculata_contig19453.4920.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19453.4920.1
Unique NamemRNA_H-paniculata_contig19453.4920.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig19453.4920.1 vs. uniprot
Match: A0A6H5J6V2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6V2_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 6.530e-22
Identity = 45/50 (90.00%), Postives = 49/50 (98.00%), Query Frame = 1 
Query:    1 YRARELSLDNSRDSPFALLAKENDIMWGGGMPDDITIVALRVINKAQSSA 150
            +RARELSLDN+RDSPFALLAKENDIMWGGGMPDDIT+VALRVINKA S+A
Sbjct:  713 HRARELSLDNTRDSPFALLAKENDIMWGGGMPDDITVVALRVINKADSTA 762
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BLAST of mRNA_H-paniculata_contig19453.4920.1 vs. uniprot
Match: D8LCX2_ECTSI (Protein phosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCX2_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 4.380e-19
Identity = 42/50 (84.00%), Postives = 47/50 (94.00%), Query Frame = 1 
Query:    1 YRARELSLDNSRDSPFALLAKENDIMWGGGMPDDITIVALRVINKAQSSA 150
            +RARELSLDN+RDSPFALLAKENDIMWGGGMP  IT+VALRVINKA S++
Sbjct:  468 HRARELSLDNTRDSPFALLAKENDIMWGGGMPYYITVVALRVINKADSTS 517
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BLAST of mRNA_H-paniculata_contig19453.4920.1 vs. uniprot
Match: A0A836CA81_9STRA (Protein phosphatase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA81_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 5.900e-19
Identity = 38/47 (80.85%), Postives = 43/47 (91.49%), Query Frame = 1 
Query:    4 RARELSLDNSRDSPFALLAKENDIMWGGGMPDDITIVALRVINKAQS 144
            RARELSLD SRDSPFALLAKENDIMWGGGMPDD+T+V +R++NK  S
Sbjct:  255 RARELSLDTSRDSPFALLAKENDIMWGGGMPDDVTVVVMRIVNKLSS 301
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BLAST of mRNA_H-paniculata_contig19453.4920.1 vs. uniprot
Match: A0A7S3XSW7_HETAK (Protein phosphatase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XSW7_HETAK)

HSP 1 Score: 78.2 bits (191), Expect = 8.720e-17
Identity = 35/47 (74.47%), Postives = 42/47 (89.36%), Query Frame = 1 
Query:    4 RARELSLDNSRDSPFALLAKENDIMWGGGMPDDITIVALRVINKAQS 144
            RARELSLD+  DSPFA+LAKENDIMWGGGMPDD T++A+RV+ K Q+
Sbjct:  126 RARELSLDDYIDSPFAVLAKENDIMWGGGMPDDCTVLAIRVVKKKQT 172
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BLAST of mRNA_H-paniculata_contig19453.4920.1 vs. uniprot
Match: A0A7S2FQD2_9STRA (Protein phosphatase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FQD2_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 1.070e-15
Identity = 35/42 (83.33%), Postives = 38/42 (90.48%), Query Frame = 1 
Query:    1 YRARELSLDNSRDSPFALLAKENDIMWGGGMPDDITIVALRV 126
            YRARELS+D   DSPFA+LAKENDIMWGGGMPDD T+VALRV
Sbjct:  312 YRARELSVDKHTDSPFAILAKENDIMWGGGMPDDCTVVALRV 353
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BLAST of mRNA_H-paniculata_contig19453.4920.1 vs. uniprot
Match: W7THC9_9STRA (Protein phosphatase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7THC9_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 2.050e-15
Identity = 35/42 (83.33%), Postives = 38/42 (90.48%), Query Frame = 1 
Query:    4 RARELSLDNSRDSPFALLAKENDIMWGGGMPDDITIVALRVI 129
            RARELSLD  RDSPFA+LAKENDIMWGGGMPDD TI A+RV+
Sbjct:  608 RARELSLDQKRDSPFAILAKENDIMWGGGMPDDCTIFAMRVV 649
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BLAST of mRNA_H-paniculata_contig19453.4920.1 vs. uniprot
Match: A0A7S2WRH3_9STRA (Protein phosphatase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WRH3_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 1.330e-14
Identity = 32/42 (76.19%), Postives = 39/42 (92.86%), Query Frame = 1 
Query:    4 RARELSLDNSRDSPFALLAKENDIMWGGGMPDDITIVALRVI 129
            R+RE SLDNSRDSPFA+LAK+NDI+W GGMPDD T++ALRV+
Sbjct:  593 RSREFSLDNSRDSPFAILAKDNDILWSGGMPDDCTVLALRVV 634
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BLAST of mRNA_H-paniculata_contig19453.4920.1 vs. uniprot
Match: A0A3R6WMB4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6WMB4_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 1.520e-14
Identity = 32/45 (71.11%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:    4 RARELSLDNSRDSPFALLAKENDIMWGGGMPDDITIVALRVINKA 138
            RA +LSLD + DSPFA LAKEND MWGGGMPDDITI+  RV+ +A
Sbjct:   40 RAYDLSLDRTIDSPFARLAKENDKMWGGGMPDDITIIVARVVKRA 84
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BLAST of mRNA_H-paniculata_contig19453.4920.1 vs. uniprot
Match: A0A7S1UZR5_9STRA (Protein phosphatase n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UZR5_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 2.430e-14
Identity = 33/45 (73.33%), Postives = 40/45 (88.89%), Query Frame = 1 
Query:    4 RARELSLDNSRDSPFALLAKENDIMWGGGMPDDITIVALRVINKA 138
            +ARELSLD+S DSPFALLAKENDIMW GGMPDD T+VA+ V+ ++
Sbjct:  418 KARELSLDSSIDSPFALLAKENDIMWSGGMPDDCTVVAMHVVGRS 462
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BLAST of mRNA_H-paniculata_contig19453.4920.1 vs. uniprot
Match: R1DRW0_EMIHU (Protein phosphatase n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DRW0_EMIHU)

HSP 1 Score: 74.3 bits (181), Expect = 3.350e-14
Identity = 37/55 (67.27%), Postives = 43/55 (78.18%), Query Frame = 1 
Query:    1 YRARELSLDNSRDSPFALLAKENDIMWGGGMPDDITIVALRVINK-AQSSAAVRL 162
            +RA+ELSLD   DSPFA+LAKENDI+WGGG PDDIT+VA RV  + A  S AV L
Sbjct:  395 HRAQELSLDREVDSPFAVLAKENDILWGGGRPDDITVVAFRVAQRGAAGSTAVPL 449
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19453.4920.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J6V2_9PHAE6.530e-2290.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCX2_ECTSI4.380e-1984.00Protein phosphatase n=1 Tax=Ectocarpus siliculosus... [more]
A0A836CA81_9STRA5.900e-1980.85Protein phosphatase n=1 Tax=Tribonema minus TaxID=... [more]
A0A7S3XSW7_HETAK8.720e-1774.47Protein phosphatase n=1 Tax=Heterosigma akashiwo T... [more]
A0A7S2FQD2_9STRA1.070e-1583.33Protein phosphatase n=1 Tax=Florenciella parvula T... [more]
W7THC9_9STRA2.050e-1583.33Protein phosphatase n=2 Tax=Monodopsidaceae TaxID=... [more]
A0A7S2WRH3_9STRA1.330e-1476.19Protein phosphatase n=1 Tax=Rhizochromulina marina... [more]
A0A3R6WMB4_9STRA1.520e-1471.11Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A7S1UZR5_9STRA2.430e-1473.33Protein phosphatase n=1 Tax=Grammatophora oceanica... [more]
R1DRW0_EMIHU3.350e-1467.27Protein phosphatase n=2 Tax=Emiliania huxleyi TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19453contigH-paniculata_contig19453:4438..4599 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score88.2
Seed ortholog evalue1.3e-15
Seed eggNOG ortholog2880.D8LCX2
Preferred namePPTC7
KEGG koko:K17508
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003824,GO:0004721,GO:0004722,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006464,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019538,GO:0036211,GO:0042578,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0140096,GO:1901564
EggNOG free text desc.phosphoprotein phosphatase activity
EggNOG OGsCOG0631@1,KOG1379@2759
EC3.1.3.16
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01009
Exons1
Model size162
Cds size162
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929478.4336581-CDS-H-paniculata_contig19453:4437..45991622929478.4336581-CDS-H-paniculata_contig19453:4437..4599Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19453 4438..4599 -
1691480879.1439278-CDS-H-paniculata_contig19453:4437..45991691480879.1439278-CDS-H-paniculata_contig19453:4437..4599Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19453 4438..4599 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19453.4920.1prot_H-paniculata_contig19453.4920.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19453 4438..4599 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19453.4920.1

>prot_H-paniculata_contig19453.4920.1 ID=prot_H-paniculata_contig19453.4920.1|Name=mRNA_H-paniculata_contig19453.4920.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=54bp
YRARELSLDNSRDSPFALLAKENDIMWGGGMPDDITIVALRVINKAQSSA
AVRL
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mRNA from alignment at H-paniculata_contig19453:4438..4599-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19453.4920.1 ID=mRNA_H-paniculata_contig19453.4920.1|Name=mRNA_H-paniculata_contig19453.4920.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=162bp|location=Sequence derived from alignment at H-paniculata_contig19453:4438..4599- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TACAGAGCTCGAGAGTTATCTCTGGACAACTCGCGGGACTCACCGTTTGC
GCTGCTGGCGAAAGAGAACGACATAATGTGGGGAGGGGGCATGCCCGATG
ACATTACTATCGTGGCGCTGCGCGTCATAAACAAGGCTCAGTCATCGGCT
GCGGTACGGTTA
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Coding sequence (CDS) from alignment at H-paniculata_contig19453:4438..4599-

>mRNA_H-paniculata_contig19453.4920.1 ID=mRNA_H-paniculata_contig19453.4920.1|Name=mRNA_H-paniculata_contig19453.4920.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=324bp|location=Sequence derived from alignment at H-paniculata_contig19453:4438..4599- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TACAGAGCTCGAGAGTTATCTCTGGACAACTCGCGGGACTCACCGTTTGC
GCTGCTGGCGAAAGAGAACGACATAATGTGGGGAGGGGGCATGCCCGATG
ACATTACTATCGTGGCGCTGCGCGTCATAAACAAGGCTCAGTCATCGGCT
GCGGTACGGTTATACAGAGCTCGAGAGTTATCTCTGGACAACTCGCGGGA
CTCACCGTTTGCGCTGCTGGCGAAAGAGAACGACATAATGTGGGGAGGGG
GCATGCCCGATGACATTACTATCGTGGCGCTGCGCGTCATAAACAAGGCT
CAGTCATCGGCTGCGGTACGGTTA
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