mRNA_H-paniculata_contig19422.4911.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19422.4911.1
Unique NamemRNA_H-paniculata_contig19422.4911.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19422.4911.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19422contigH-paniculata_contig19422:2478..2847 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size371
Cds size360
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929477.4614253-UTR-H-paniculata_contig19422:2477..24871622929477.4614253-UTR-H-paniculata_contig19422:2477..2487Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19422 2478..2487 +
1691480878.8099215-UTR-H-paniculata_contig19422:2477..24871691480878.8099215-UTR-H-paniculata_contig19422:2477..2487Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19422 2478..2487 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929477.4792287-CDS-H-paniculata_contig19422:2487..28471622929477.4792287-CDS-H-paniculata_contig19422:2487..2847Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19422 2488..2847 +
1691480878.8278809-CDS-H-paniculata_contig19422:2487..28471691480878.8278809-CDS-H-paniculata_contig19422:2487..2847Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19422 2488..2847 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19422.4911.1prot_H-paniculata_contig19422.4911.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19422 2488..2847 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19422.4911.1

>prot_H-paniculata_contig19422.4911.1 ID=prot_H-paniculata_contig19422.4911.1|Name=mRNA_H-paniculata_contig19422.4911.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=120bp
MCFVLVWSGGRQMVKKIPPYSSFCYKRFVFEKREIGQNRWKLWHIGDIIS
IIISRPPIKRRLVTVDSFAVSQLNSLLSTLILTLDPPIHRRVETNSGFGS
RRAQPHNHFPQRFQALNSLR
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mRNA from alignment at H-paniculata_contig19422:2478..2847+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19422.4911.1 ID=mRNA_H-paniculata_contig19422.4911.1|Name=mRNA_H-paniculata_contig19422.4911.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=370bp|location=Sequence derived from alignment at H-paniculata_contig19422:2478..2847+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AATTAATTGAATGTGTTTCGTACTTGTTTGGTCGGGAGGACGACAAATGG
TTAAGAAAATTCCTCCTTATTCTTCATTTTGCTACAAACGTTTCGTGTTC
GAAAAGAGGGAAATCGGCCAAAACCGCTGGAAATTATGGCATATCGGCGA
CATTATCTCAATAATCATCTCAAGACCCCCCATAAAGAGAAGACTTGTTA
CGGTGGATTCCTTTGCGGTTTCTCAACTAAATTCGTTGTTATCCACTCTC
ATCCTCACCCTTGACCCACCAATCCATCGCCGCGTGGAGACGAACTCAGG
TTTCGGATCCCGACGTGCACAACCTCACAATCATTTCCCCCAGCGTTTCC
AAGCCTTGAACTCTCTAAGA
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Coding sequence (CDS) from alignment at H-paniculata_contig19422:2478..2847+

>mRNA_H-paniculata_contig19422.4911.1 ID=mRNA_H-paniculata_contig19422.4911.1|Name=mRNA_H-paniculata_contig19422.4911.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=720bp|location=Sequence derived from alignment at H-paniculata_contig19422:2478..2847+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGTTTCGTACTTGTTTGGTCGGGAGGACGACAAATGGTTAAGAAAAT
TCCTCCTTATTCTTCATTTTGCTACAAACGTTTCGTGTTCGAAAAGAGGG
AAATCGGCCAAAACCGCTGGAAATTATGGCATATCGGCGACATTATCTCA
ATAATCATCTCAAGACCCCCCATAAAGAGAAGACTTGTTACGGTGGATTC
CTTTGCGGTTTCTCAACTAAATTCGTTGTTATCCACTCTCATCCTCACCC
TTGACCCACCAATCCATCGCCGCGTGGAGACGAACTCAGGTTTCGGATCC
CGACGTGCACAACCTCACAATCATTTCCCCCAGCGTTTCCAAGCCTTGAA
CTCTCTAAGAATGTGTTTCGTACTTGTTTGGTCGGGAGGACGACAAATGG
TTAAGAAAATTCCTCCTTATTCTTCATTTTGCTACAAACGTTTCGTGTTC
GAAAAGAGGGAAATCGGCCAAAACCGCTGGAAATTATGGCATATCGGCGA
CATTATCTCAATAATCATCTCAAGACCCCCCATAAAGAGAAGACTTGTTA
CGGTGGATTCCTTTGCGGTTTCTCAACTAAATTCGTTGTTATCCACTCTC
ATCCTCACCCTTGACCCACCAATCCATCGCCGCGTGGAGACGAACTCAGG
TTTCGGATCCCGACGTGCACAACCTCACAATCATTTCCCCCAGCGTTTCC
AAGCCTTGAACTCTCTAAGA
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