mRNA_H-paniculata_contig1942.4909.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1942.4909.1 vs. uniprot
Match: D7FKN2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKN2_ECTSI) HSP 1 Score: 178 bits (451), Expect = 1.300e-43 Identity = 144/385 (37.40%), Postives = 199/385 (51.69%), Query Frame = 2
Query: 2063 QGIVKDGDAREVTFCSQSRGREDGRRKYLVGDVDEDDDTE---SDEGAAEIRVAGLSERIGLRCLQVEEECMRRERTVKRLFEEQLRGIRAGAQNTIRAAVGAERSRARKQSDEARKEAEEKEATMVAEAQSAEGRWNQEREALSMEASSAKSNLERQKRTFREAIDASQQEAKQALVNQKQALERGWAEERASLRRTAEDSQRRATEDRARAAKEATQQAHSRHGTLEAQVRSWKAKAEAAEKRALEERQRRRHLEAGAKGAFAEEVDKARKSQDRVLEDLRTKSEADREAHSQEVERLKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRRLRLAHDAEMRKAGRETLRLQREVRRLQ 3208
+G + G +++V Q + ED R L +E++D + +E + RVA LS RI R+ RLF+EQLRG+R GAQ R + ER R ++ E ++ EEKE +VA+ + AE W ERE+LS + ++AK +E+ +R R A +A++ K+AL Q+ +RGWAEE+ LRR AED+ RRA E R +EA +A + +L+AQ+RSWKAKAE AE+RA EER++RR LEAG KG A+EV+KA DR H++E+ERL+E LRRLRLAHD EMRKAGR+ LRL+RE RR Q
Sbjct: 89 RGAMARGTSQQVDQHEQQQCFEDERAGGLAHSEEEEEDGDXXGDNEQESAGRVAELSRRIXXXXXXXXXXXXXXXRSQTRLFQEQLRGVRLGAQQVARRTIHDERIRQKQLLLETQQRFEEKEKGLVAKLELAEESWKAERESLSADTAAAKCEVEKCRRQARAAAEAARNTTKEALEKQRLDFQRGWAEEKGGLRRAAEDALRRAMEGNVREREEAATKAQTAQDSLDAQLRSWKAKAETAERRATEEREKRRGLEAGVKGVLAQEVEKAXXXXXXXXXXXXXXXXXDRATHAEEIERLQEEHRAGLLRVHQDKKSLFEAARRQWEKEMQELRREAVAKAEDAATRATAERSEALRRLRLAHDTEMRKAGRDILRLEREARRSQ 473
BLAST of mRNA_H-paniculata_contig1942.4909.1 vs. uniprot
Match: A0A6H5JD13_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD13_9PHAE) HSP 1 Score: 158 bits (400), Expect = 7.240e-36 Identity = 128/334 (38.32%), Postives = 168/334 (50.30%), Query Frame = 2
Query: 2207 RVAGLSERIGLRCLQVEEECMRRERTVKRLFEEQLRGIRAGAQNTIRAAVGAERSRARKQSDEARKEAEEKEATMVAEAQSAEGRWNQEREALSMEASSAKSNLERQKRTFREAIDASQQEAKQALVNQKQALERGWAEERASLRRTAEDSQRRATEDRARAAKEATQQAHSRHGTLEAQVRSWKAKAEAAEKRALEERQRRRHLEAGAKGAFAEEVDKARKSQDRVLEDLRTKSEADREAHSQEVERLKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRRLRLAHDAEMRKAGRETLRLQREVRRLQ 3208
RVA LS RI +RC + RLF+EQLR +R GAQ R + ER R ++ E ++ EEKE +VA+ AE W ERE+L+ ++AKS +E+ +R R A +A +++AL Q+ L+RGWAEE+ LRR AED+ RRA E ARA +EA ++A + +L+AQVRSWKAK E AE+RA EER++R+ LEAG KGA A+E ERL+E LRRLRLAHD EMRKAGR+ LRL+RE RR Q
Sbjct: 502 RVAELSRRIAMRCXXXXXXXXXXXXSQTRLFQEQLRSVRLGAQQVARRTIHDERIRQKQLLLETQQRFEEKERGLVAKLNLAEESWKVERESLNANTAAAKSEVEKCRRQARAAAEAGMNASREALEKQRLDLQRGWAEEKGGLRRAAEDALRRAMEGNARAREEAAKKAQAAQDSLDAQVRSWKAKTETAERRAAEEREKRKGLEAGVKGALAQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTERLQEEHRAALLRVHQDKKSLFEAARRKWEKEMQELRREAVAKAEDAATRATAERSEALRRLRLAHDTEMRKAGRDILRLEREARRCQ 835 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1942.4909.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1942.4909.1 >prot_H-paniculata_contig1942.4909.1 ID=prot_H-paniculata_contig1942.4909.1|Name=mRNA_H-paniculata_contig1942.4909.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=914bp MTNPSKHHCTAPEKAGTTTVTHVIRLHRTGSVEVEQVGRHESETKYEKNPback to top mRNA from alignment at H-paniculata_contig1942:988..17674- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1942.4909.1 ID=mRNA_H-paniculata_contig1942.4909.1|Name=mRNA_H-paniculata_contig1942.4909.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=16687bp|location=Sequence derived from alignment at H-paniculata_contig1942:988..17674- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1942:988..17674- >mRNA_H-paniculata_contig1942.4909.1 ID=mRNA_H-paniculata_contig1942.4909.1|Name=mRNA_H-paniculata_contig1942.4909.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=5484bp|location=Sequence derived from alignment at H-paniculata_contig1942:988..17674- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |