mRNA_H-paniculata_contig19411.4908.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19411.4908.1
Unique NamemRNA_H-paniculata_contig19411.4908.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19411.4908.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19411contigH-paniculata_contig19411:329..945 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size254
Cds size138
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19411.4908.1prot_H-paniculata_contig19411.4908.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19411 444..945 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929477.095458-UTR-H-paniculata_contig19411:328..4431622929477.095458-UTR-H-paniculata_contig19411:328..443Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19411 329..443 -
1691480878.6143603-UTR-H-paniculata_contig19411:328..4431691480878.6143603-UTR-H-paniculata_contig19411:328..443Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19411 329..443 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929477.1119347-CDS-H-paniculata_contig19411:443..4841622929477.1119347-CDS-H-paniculata_contig19411:443..484Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19411 444..484 -
1691480878.6305144-CDS-H-paniculata_contig19411:443..4841691480878.6305144-CDS-H-paniculata_contig19411:443..484Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19411 444..484 -
1622929477.125008-CDS-H-paniculata_contig19411:848..9451622929477.125008-CDS-H-paniculata_contig19411:848..945Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19411 849..945 -
1691480878.6419487-CDS-H-paniculata_contig19411:848..9451691480878.6419487-CDS-H-paniculata_contig19411:848..945Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19411 849..945 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19411.4908.1

>prot_H-paniculata_contig19411.4908.1 ID=prot_H-paniculata_contig19411.4908.1|Name=mRNA_H-paniculata_contig19411.4908.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=46bp
HCRLAVHQQSVVPSVWKASDAGWLGLEFCAREGFRHASERQPQAT*
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mRNA from alignment at H-paniculata_contig19411:329..945-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19411.4908.1 ID=mRNA_H-paniculata_contig19411.4908.1|Name=mRNA_H-paniculata_contig19411.4908.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=617bp|location=Sequence derived from alignment at H-paniculata_contig19411:329..945- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACTGTAGGCTAGCAGTGCACCAGCAGTCAGTAGTGCCGTCCGTATGGAA
GGCATCAGACGCCGGTTGGTTGGGGCTGGAGTTCTGCGCTCGTGAGGGTG
TGAGTGTGGTGTGCTCTTATTGTGTTCTTGTTGCTGCGCCTCAGACGGAC
AAGAGTAGAAGTACCAGTAGCAGTAGGCCGTGCTCAGGTGGCTGACAGCA
ATGGTAGTGTTGGTACGGAAGTGACATTACAGCAATGACAGACGATCCGC
AATAACCACCTTTCTCTACTGATGACTCAGTCGCTTGTTCGATGGAGCTA
CTGTTAGAGCGCATTGGGATAGTTAAGATAAATTGGCTGTGAGCTTGAAC
GCTGGATTATTGGACCTCAAGCACGTCAGTCAGCTACATCCCAACGGCTG
TGCCTTTGTCCTCCTTCTCTTTCTTCTTACTCTTCGCCTTTCCGTGCGCC
CATGCATACAGGTTTTCGTCACGCCTCCGAACGGCAGCCGCAAGCTACCT
GAAGTTCTCAAGAACCATTACGTCTGCGAGTACGACATCCACCTCAAGTA
CATCTCCTGCACTACTCTGGTACGTCCTACTTCGAGGAGAGGCCTCAATA
AAGTCAGAGACTCCATA
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Coding sequence (CDS) from alignment at H-paniculata_contig19411:329..945-

>mRNA_H-paniculata_contig19411.4908.1 ID=mRNA_H-paniculata_contig19411.4908.1|Name=mRNA_H-paniculata_contig19411.4908.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=276bp|location=Sequence derived from alignment at H-paniculata_contig19411:329..945- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACTGTAGGCTAGCAGTGCACCAGCAGTCAGTAGTGCCGTCCGTATGGAA
GGCATCAGACGCCGGTTGGTTGGGGCTGGAGTTCTGCGCTCGTGAGGCAC
TGTAGGCTAGCAGTGCACCAGCAGTCAGTAGTGCCGTCCGTATGGAAGGC
ATCAGACGCCGGTTGGTTGGGGCTGGAGTTCTGCGCTCGTGAGGGTTTTC
GTCACGCCTCCGAACGGCAGCCGCAAGCTACCTGAGTTTTCGTCACGCCT
CCGAACGGCAGCCGCAAGCTACCTGA
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