mRNA_H-paniculata_contig194.4903.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig194.4903.1
Unique NamemRNA_H-paniculata_contig194.4903.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig194.4903.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig194contigH-paniculata_contig194:1429..2116 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size688
Cds size384
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig194.4903.1prot_H-paniculata_contig194.4903.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig194 1601..1984 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929476.0544825-UTR-H-paniculata_contig194:1428..16001622929476.0544825-UTR-H-paniculata_contig194:1428..1600Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig194 1429..1600 +
1691480878.0597987-UTR-H-paniculata_contig194:1428..16001691480878.0597987-UTR-H-paniculata_contig194:1428..1600Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig194 1429..1600 +
1622929476.0881722-UTR-H-paniculata_contig194:1984..21161622929476.0881722-UTR-H-paniculata_contig194:1984..2116Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig194 1985..2116 +
1691480878.0757103-UTR-H-paniculata_contig194:1984..21161691480878.0757103-UTR-H-paniculata_contig194:1984..2116Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig194 1985..2116 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929476.0719476-CDS-H-paniculata_contig194:1600..19841622929476.0719476-CDS-H-paniculata_contig194:1600..1984Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig194 1601..1984 +
1691480878.0679636-CDS-H-paniculata_contig194:1600..19841691480878.0679636-CDS-H-paniculata_contig194:1600..1984Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig194 1601..1984 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig194.4903.1

>prot_H-paniculata_contig194.4903.1 ID=prot_H-paniculata_contig194.4903.1|Name=mRNA_H-paniculata_contig194.4903.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=128bp
MRRRWRLRLRHYPPSLIPLPWAIGVGGALRSVGCGCRSPPFHRCPCRPHH
MPFATIGHGCRCTADHLFNTRLPHQRAVVNRDCSNPSCYSRHQRGLSPPD
GVLYRPASRCSSFLRRNIMRWRRSSGH*
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mRNA from alignment at H-paniculata_contig194:1429..2116+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig194.4903.1 ID=mRNA_H-paniculata_contig194.4903.1|Name=mRNA_H-paniculata_contig194.4903.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=688bp|location=Sequence derived from alignment at H-paniculata_contig194:1429..2116+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCCAGATTGGCCGCTTCCACCCTCTGTTTTTTATCAGTCCTTCGCACTCA
CCGTCGCGTCGTTCCCTTCCTACTTCCCTACGATCCACCGAAAAACCAAA
CCTTTTCGCCTCCCGGGCAGTGCTGACTGGCGCGCCGTGTGTAACTGTTA
CGTCCCCAACTTCCTGCGTTCCATGCGCCGCCGCTGGCGGTTGCGCCTCC
GCCATTACCCCCCGTCGTTGATCCCTCTGCCGTGGGCCATCGGCGTGGGA
GGCGCACTTCGTTCGGTGGGTTGCGGATGCCGCTCGCCACCCTTCCACCG
CTGCCCCTGCCGGCCCCATCACATGCCCTTCGCTACCATCGGTCATGGCT
GCAGGTGTACCGCTGATCACCTCTTCAACACCCGCCTGCCTCACCAAAGG
GCGGTCGTCAACCGCGACTGTAGCAACCCGAGCTGCTACAGCCGCCACCA
ACGCGGCCTCAGTCCCCCCGATGGAGTCCTGTACCGCCCGGCAAGTCGTT
GCTCCTCCTTCCTCCGTCGCAATATCATGCGATGGCGTCGCTCGTCTGGC
CACTAGCATCCCATCTCGGCTCTGCGCGACGTCGTTCAGCCGAAGTTCCA
AATCCATATCCGCTCGTAGCGACTCCCCCGTTACATGATTTTGCGTGAGT
CGCATAAGTGCCGCGTTCGTCCTACTCCATCCCACTGC
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Coding sequence (CDS) from alignment at H-paniculata_contig194:1429..2116+

>mRNA_H-paniculata_contig194.4903.1 ID=mRNA_H-paniculata_contig194.4903.1|Name=mRNA_H-paniculata_contig194.4903.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=768bp|location=Sequence derived from alignment at H-paniculata_contig194:1429..2116+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGCCGCCGCTGGCGGTTGCGCCTCCGCCATTACCCCCCGTCGTTGAT
CCCTCTGCCGTGGGCCATCGGCGTGGGAGGCGCACTTCGTTCGGTGGGTT
GCGGATGCCGCTCGCCACCCTTCCACCGCTGCCCCTGCCGGCCCCATCAC
ATGCCCTTCGCTACCATCGGTCATGGCTGCAGGTGTACCGCTGATCACCT
CTTCAACACCCGCCTGCCTCACCAAAGGGCGGTCGTCAACCGCGACTGTA
GCAACCCGAGCTGCTACAGCCGCCACCAACGCGGCCTCAGTCCCCCCGAT
GGAGTCCTGTACCGCCCGGCAAGTCGTTGCTCCTCCTTCCTCCGTCGCAA
TATCATGCGATGGCGTCGCTCGTCTGGCCACTAGATGCGCCGCCGCTGGC
GGTTGCGCCTCCGCCATTACCCCCCGTCGTTGATCCCTCTGCCGTGGGCC
ATCGGCGTGGGAGGCGCACTTCGTTCGGTGGGTTGCGGATGCCGCTCGCC
ACCCTTCCACCGCTGCCCCTGCCGGCCCCATCACATGCCCTTCGCTACCA
TCGGTCATGGCTGCAGGTGTACCGCTGATCACCTCTTCAACACCCGCCTG
CCTCACCAAAGGGCGGTCGTCAACCGCGACTGTAGCAACCCGAGCTGCTA
CAGCCGCCACCAACGCGGCCTCAGTCCCCCCGATGGAGTCCTGTACCGCC
CGGCAAGTCGTTGCTCCTCCTTCCTCCGTCGCAATATCATGCGATGGCGT
CGCTCGTCTGGCCACTAG
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