mRNA_H-paniculata_contig19295.4871.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19295.4871.1
Unique NamemRNA_H-paniculata_contig19295.4871.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19295.4871.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19295contigH-paniculata_contig19295:847..2851 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size193
Cds size192
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929471.5620794-CDS-H-paniculata_contig19295:846..10051622929471.5620794-CDS-H-paniculata_contig19295:846..1005Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19295 847..1005 -
1691480876.1210086-CDS-H-paniculata_contig19295:846..10051691480876.1210086-CDS-H-paniculata_contig19295:846..1005Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19295 847..1005 -
1622929471.5781612-CDS-H-paniculata_contig19295:2818..28511622929471.5781612-CDS-H-paniculata_contig19295:2818..2851Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19295 2819..2851 -
1691480876.1384058-CDS-H-paniculata_contig19295:2818..28511691480876.1384058-CDS-H-paniculata_contig19295:2818..2851Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19295 2819..2851 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19295.4871.1prot_H-paniculata_contig19295.4871.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19295 847..2851 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19295.4871.1

>prot_H-paniculata_contig19295.4871.1 ID=prot_H-paniculata_contig19295.4871.1|Name=mRNA_H-paniculata_contig19295.4871.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=64bp
IAIGPAGCASSDKARQVSLRLVGCGFSLVHVAFQRLAVVSTCLGEGGSRS
GSGQDIRYTYGYGQ
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mRNA from alignment at H-paniculata_contig19295:847..2851-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19295.4871.1 ID=mRNA_H-paniculata_contig19295.4871.1|Name=mRNA_H-paniculata_contig19295.4871.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2005bp|location=Sequence derived from alignment at H-paniculata_contig19295:847..2851- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCGCGATAGGACCGGCGGGGTGCGCTAGCTCGGTGAGCCAGCCGGCAGT
TATGTGGAAATGAAAAAAGAGACTTCGTCCGCGTTCAACTCTTTCAGTTC
CTGCTGCCGCAGCACCCGTCTAGAATCCTCGTTAGAAAATGGTCATCGTG
GAAAAATCATTCATGGCAGAAAAGATGAGGTCTTCGTACATATACCGGGA
ATGAGGCCCCGCCGCCAGCCAGCTACACACACACACACACACATATATGT
ATATGTAGTGCCGTACTATTCTCGTTGGTAGACAGATAGACAGTGCATGA
TTTTCGTGGCTGTGTGCTACAGATGACAGTACAGAGAATCGAGAGGTTTT
GAGAGGTGTACTTCTTGCCTTCGTATGTCCGAACGTTTTTTTGTTTTTTT
TTAGAGCCAATTAATTTGCACGTTAAATCTTTTCTGGGCGTTAGTGTGGT
ACAGAGGGAGAAAGGGCAAGCGTAGGGCTTGGTTTACGACCACTTGTCCT
TGGGAGGACGGAGCAAGGAGGGGATCACACCATAGCTTCCCAACTCTGAG
AATGAGGGTACCTGTTCACGAAAGGCGTCGGGTGAACATTATCCCTTTGA
AGATCTTGCTAAGGTGGCCACGATATTGAACCCCTCTTTCTTCGATTCAT
CCTTTGAAAGACTTCAGTTTAGGGGGCAGCCGGAACCTGACAGGCGTACG
GCGAAGAGCTACAATGTCTCTACCCCCTGGACAACTACGGATACTGGAGA
AAAATGTTTTTTCGCAAACAACTGAAAGTATCCGCCTGAGTCTCAGAATG
AGCGGACACATGAAAAATAAAGCGCCCACCCACCTGTTCATTCGATTTCA
GAGTATTATTAGCACCGGCGTACGTAGAATGCTTTTGGGGGGGGTGGTGA
TGTTGGGGTTCGAATCTGTGATGCTTCAGGACGAGAAGTAAACAAGTTAT
CCAGTGGTGCTGCTAATGTGAACCTGAGGGCAACTGTTCTCGACAGACGT
TGGGTGATGGTTGCCCCTTTTAAGGGTGTCACTCAGGTGGTTACTACCTG
CACAACAGGTTGAATATACCCTCCTGCTAGTTGTAAGGGTGGCAATAGTA
CGTTTCCAGACTCATGAGGTGCTTTATTTCGTTTCCGTAAGTACAGTACG
CACGGACAGCACCCCAAGAAATGCCTATTTCGGCGTAAGCCAGCTAGCCT
CGCGGCGTTTACCAAATATATGTTCGTACGTCCTACTATGCAGGGATCAG
TATAGAGCCACAAACAGTGATGAATCGGTATTTTTCAAGAGAAAATTTCT
TCCATAGATCTATCTACAAAACAACTGTCTTGATTTTTTTTCAACAATCA
GATTTTGTAAACTATTTCACCCCCGAAGTCCACATTCAATCTCTGTCTAG
TACACACCTCAAGGACAGAGAAAAACGTAAAAAGCATGGCGTAATCACGG
AGATAAGGAGCCGCCACTGTTTAGACAGGCAGTTAGCATACAGCACTAGT
CAAGGTTTTGGCGTGGCTTTGTCCACAATGACCAAATACTGCTGATATCC
AACGACTAATTAGGGAGTGGTACCCCCTCAACACCAAAATCTCGATCCCC
GGGCAGGTGCCGAGTTGAAGATGAGATCGGCCGTGACATCCGACATTCTT
GCATCCACACGTTCTGAAAGCGTAACATGCCAGGGTTGGAGGGACGGGGA
GCCTCAGTTTTTTTGGGGGAGTTAAGCGGGTGTGATTGGTCGTTTTATAC
GACTATATTCGTGGGATGTGTGAAGTAGTGCAGGGTCCGATTTATTGCTC
TGAAACTACTTGTCATCCGGGGGTGTCCTATGCTGTATATACGCAGGATA
AGGCTCGGCAAGTGTCGCTGAGGCTTGTGGGATGTGGGTTCAGCTTGGTG
CATGTGGCTTTTCAGCGACTGGCGGTAGTATCCACGTGCCTGGGCGAGGG
AGGCTCACGGTCCGGTAGTGGCCAAGACATTCGGTACACGTACGGCTATG
GGCAG
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Coding sequence (CDS) from alignment at H-paniculata_contig19295:847..2851-

>mRNA_H-paniculata_contig19295.4871.1 ID=mRNA_H-paniculata_contig19295.4871.1|Name=mRNA_H-paniculata_contig19295.4871.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=384bp|location=Sequence derived from alignment at H-paniculata_contig19295:847..2851- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCGCGATAGGACCGGCGGGGTGCGCTAGCTCGATCGCGATAGGACCGGC
GGGGTGCGCTAGCTCGGATAAGGCTCGGCAAGTGTCGCTGAGGCTTGTGG
GATGTGGGTTCAGCTTGGTGCATGTGGCTTTTCAGCGACTGGCGGTAGTA
TCCACGTGCCTGGGCGAGGGAGGCTCACGGTCCGGTAGTGGCCAAGACAT
TCGGTACACGTACGGCTATGGGCAGGATAAGGCTCGGCAAGTGTCGCTGA
GGCTTGTGGGATGTGGGTTCAGCTTGGTGCATGTGGCTTTTCAGCGACTG
GCGGTAGTATCCACGTGCCTGGGCGAGGGAGGCTCACGGTCCGGTAGTGG
CCAAGACATTCGGTACACGTACGGCTATGGGCAG
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