mRNA_H-paniculata_contig1924.4848.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1924.4848.1
Unique NamemRNA_H-paniculata_contig1924.4848.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1924.4848.1 vs. uniprot
Match: A0A6H5L4T8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4T8_9PHAE)

HSP 1 Score: 155 bits (392), Expect = 1.250e-39
Identity = 142/411 (34.55%), Postives = 200/411 (48.66%), Query Frame = 1 
Query:    1 ALLKRRHAEHLLEVVHKAEKREWERQQKYLHSTSKDRTQHLHARFEVERRRDRTRISRLLQDARTIEAALL-QREPSTANNRPLKRG---SLLKRAYHGDSDPVGDDGGK--------VFESLGGR---STKSNAILEPTEVREDPNFISTGQMRFLKYVYKTVEGHKVEKVHEKKMTQFTEDRRKKKDRTRELSRSIGRRQGICSSSADQVPNGRGKPVNTGVSSLSGSTGENQIPTAGQS-----KGKRRLLEQKRGILLEIKDLVSRQTETIDRLAEGCGDTT-----------RNRKTSRSVVYTGRAGRSLMSSSRGTS---MVSSSVPSSSRRQSQLPQTRCSSTGR-NAITPLPPLPSPPEQSATSKFLTLGGRWENTTVEERVCRHRSSIASSASYASYGERD 1128
            A LK +HAEH+LEVV +AEK+E  RQ+K  H+TSK    +L  RF  ERR+D+  IS L+QDA  +EAALL +++P    N  L R    +   RAY+  S+  GD GG         V  S+G R   STKSNA +EP + ++D NFIS  QMRF+KY+Y  +EG    K H +  T    + ++   +     +                              ++GS+    +   G+        +R+LLE+KRGILLE+K +V+RQ E +DRL +   +             RN + SR    +     SL + +  TS     S S P  S    + P    S   R  A  P+PP  + P+ + TS FL  GGRW   +      R   + ASSASYA+Y +RD
Sbjct:    6 AALKLKHAEHILEVVREAEKQEAARQRKLKHATSKKNLAYLQKRFIAERRQDQAHISELVQDANAVEAALLKEQQPLQGGNTSLARDDPCAAASRAYNAPSEGGGDAGGAAGAVDTGGVEGSVGVRRILSTKSNAYMEPADPKDDSNFISLDQMRFMKYMYSHIEGQNGAKAHTRLTTNVVREEKQIAVKPNAHKQRXXXXXXXXXXXXXXXXXXXXXXXXXXAGPVAGSSAPPLLSKGGEGGRNSGSRERQLLERKRGILLEMKGVVNRQAEALDRLVQSSANANVAGNGRRRGGDRNSRKSRPSQASVSTSSSLFTPNGATSGQNTRSGSCPHISSHIKKSPAMLPSPLTRPKAELPMPP--TVPQDNGTSAFLARGGRWGGESRRRSWRRDSVTTASSASYATYCKRD 414
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BLAST of mRNA_H-paniculata_contig1924.4848.1 vs. uniprot
Match: D7G1P3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1P3_ECTSI)

HSP 1 Score: 154 bits (389), Expect = 3.260e-39
Identity = 146/411 (35.52%), Postives = 197/411 (47.93%), Query Frame = 1 
Query:    1 ALLKRRHAEHLLEVVHKAEKREWERQQKYLHSTSKDRTQHLHARFEVERRRDRTRISRLLQDARTIEAALLQREPSTANNRPLKRGSLLKRAYHGD---SDPVGDDGGKVFE-----SLGGR---STKSNAILEPTEVREDPNFISTGQMRFLKYVYKTVEGHKVEKVHEKKMTQFTEDRRKKKDRTRELSRSIGRRQGICSSSADQ---VPNGRGKPVNTGVSSLSGSTGENQIPTAGQS-----KGKRRLLEQKRGILLEIKDLVSRQTETIDRLAE---------------GCGDTTRNRKTSRSVVYTGRAGRSLMSSSRGTSMVSSSVPSSSRRQSQLPQTRCSSTGR-NAITPLPPLPSPPEQSATSKFLTLGGRWENTTVEERVCRHRSSIASSASYASYGERD 1128
            A LK +HAEH+LEVV +AEK+E  RQ+K  H+TSKD   +L  RF  ERR+D+  IS L+QDA  +EAALL+ +          R      A  GD   S   GD GG V       S+G R   STKSNA +E  E ++D  FIS  QMRF+KYVY  ++G K  K H + MT    + ++   R     +              +     NG G         ++GS+    I  AG+        +R+LLE+KRGILLE+K +VSRQ E +DRL +               G    +R  + S + V T  +  +      G +  S S P  S   +  P    SS  R  A  P+PP  + P  + TS FL  GGRW   +          + ASSASYA+Y +RD
Sbjct:    6 AALKLKHAEHILEVVREAEKQEAARQRKLRHATSKDNLAYLQKRFTAERRQDQAHISGLVQDANAVEAALLKEQQPLQGRNSQGRDDPCAAASRGDNASSQGGGDAGGAVNTGGVEGSVGVRRIFSTKSNAYVETAEPKDDSKFISLDQMRFMKYVYSHIDGQKAAKAHTRLMTDVVREEKQMAARPNAHEQXXXXXXXXXXXXXXKRMFASNGAGSRR---AGPVAGSSVPPVISKAGEGGCNSGSRERQLLERKRGILLEMKGVVSRQAEALDRLVQSSANANVAAENGRRRGGDHNSRQSRPSHASVSTSSSLFTPKGEKSGRNTRSGSCPDISGLTNNSPAMLPSSATRPTAALPMPP--TVPPDNVTSAFLARGGRWGGESRRGSWRCDSVTTASSASYATYCKRD 411
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1924.4848.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L4T8_9PHAE1.250e-3934.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1P3_ECTSI3.260e-3935.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1924contigH-paniculata_contig1924:4217..7422 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-10_000500.1
Exons3
Model size1137
Cds size1137
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1924.4848.1prot_H-paniculata_contig1924.4848.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1924 4217..7422 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929469.0102062-CDS-H-paniculata_contig1924:4216..49391622929469.0102062-CDS-H-paniculata_contig1924:4216..4939Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1924 4217..4939 -
1691480874.929373-CDS-H-paniculata_contig1924:4216..49391691480874.929373-CDS-H-paniculata_contig1924:4216..4939Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1924 4217..4939 -
1622929469.0231886-CDS-H-paniculata_contig1924:5174..54571622929469.0231886-CDS-H-paniculata_contig1924:5174..5457Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1924 5175..5457 -
1691480874.943741-CDS-H-paniculata_contig1924:5174..54571691480874.943741-CDS-H-paniculata_contig1924:5174..5457Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1924 5175..5457 -
1622929469.0393379-CDS-H-paniculata_contig1924:7291..74221622929469.0393379-CDS-H-paniculata_contig1924:7291..7422Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1924 7292..7422 -
1691480874.9532554-CDS-H-paniculata_contig1924:7291..74221691480874.9532554-CDS-H-paniculata_contig1924:7291..7422Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1924 7292..7422 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1924.4848.1

>prot_H-paniculata_contig1924.4848.1 ID=prot_H-paniculata_contig1924.4848.1|Name=mRNA_H-paniculata_contig1924.4848.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=379bp
ALLKRRHAEHLLEVVHKAEKREWERQQKYLHSTSKDRTQHLHARFEVERR
RDRTRISRLLQDARTIEAALLQREPSTANNRPLKRGSLLKRAYHGDSDPV
GDDGGKVFESLGGRSTKSNAILEPTEVREDPNFISTGQMRFLKYVYKTVE
GHKVEKVHEKKMTQFTEDRRKKKDRTRELSRSIGRRQGICSSSADQVPNG
RGKPVNTGVSSLSGSTGENQIPTAGQSKGKRRLLEQKRGILLEIKDLVSR
QTETIDRLAEGCGDTTRNRKTSRSVVYTGRAGRSLMSSSRGTSMVSSSVP
SSSRRQSQLPQTRCSSTGRNAITPLPPLPSPPEQSATSKFLTLGGRWENT
TVEERVCRHRSSIASSASYASYGERDNER
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mRNA from alignment at H-paniculata_contig1924:4217..7422-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1924.4848.1 ID=mRNA_H-paniculata_contig1924.4848.1|Name=mRNA_H-paniculata_contig1924.4848.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3206bp|location=Sequence derived from alignment at H-paniculata_contig1924:4217..7422- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCATTACTGAAAAGGCGACATGCTGAACACTTGCTCGAGGTAGTCCATAA
GGCCGAGAAGCGGGAATGGGAGCGACAACAGAAATATTTACACTCCACCA
GTAAAGATCGAACACAGCACCTTCATGCAAGGTGGGCAACACAAGAAAAT
TAGACGAGAGGAAGGAATGGTCGATTGCAAGGTCTGAAGTTACTGCTAGT
TGAACGAAATTATACCGTGGCGCGCCGGCCCCTCCATTCGTGATCATTGA
TTCGAGTCGTTCATCAACCTCTCAATCGAATGCATCGTAATGTGAACTAT
GAGTAGTACTGTCTTCCTCCAAGTAATGTCATACTCCCGACATCGAGAGA
TTCCATAGCGAAGTCACTCGTTATAAGCGTCAAGATCAGGGCGACAATAC
TTGAATATCATCAACATCTCGACATGAAGGAGCACTATTCCAGAGAGCGC
GTCCATTGTAGAAAGAGTATAACCAAGGGGAGTCCTCGACAGACGTCAGG
TGATTATTACCCCTTTTAAGGTGTTCCGCTCAGGTGGCCACCACATTCCC
CCCCCCCCCTCTTCGAGTCTTGCTTTGGAAGATTACAGTTTAGGGGTAAC
CGGAACCGACGGGCTGGCGGCGAGGTACTACAATCTCTTTTCTTCAGATG
AGTTCTGAACTTGTTGCTTTGGTTTCCCCACCGTAGTTGTGACTTTTGTG
TTGGGCGCTTAACTTTTCAGTGTGCCAATGCTGGGGTTTGAACCCATGAC
CTTAAGGTCACAGACAAGTTACTGTATCTATCGGTGTCACCAATGTGAAA
CTGAGGGTAACTGATCTTGACAGATGTTGGGTAACTATTATCCCCTTTAA
GGTGTTTTCCTCAGGTGGCCACTGCAGCTGTGCGTTTAAAACGAATTCGT
AAGTCTGAAGGTCAGTAAGCATCTAATTATTGCGCAATATTACAAAGCGA
GATGCAGCAAGCGGCAACCCGTATCCGGGTAGTGCCTTCAATACCTCACC
GTGTGCAGATAGGTTTGTTAGTTGTCGGGTGAGCGATGTACACGGCGTGC
ATACAGCAAAGGCGACTAATATCTTGTGATCTGAGTATTATATGAACAGG
TGTTGCTCGAAGAAGAGACGGTGATCTCACCGGCGAGGGTGCACTTAAAT
CGCAGTGCAGGTCCCGATAACTATAAACATAGTTCCAACGTAATCACTGC
TCTTACAAATGGTCAGCTTCTTGACGGAATACGGCTGCTCTCAAAAGTCG
AATAGTCGGTGCGGCCACCTCGAAACAAGAGTTCATTGATGAAATCATTT
TCGCTCTTAATCGAGCTCTTCAAGACAGGAAATGAACATACGTAATGTGG
AGAATACTTCATAGAAATGGGTAATCCCCACTAAAGATGTTTAATAGAAA
ATTAAACTGATTTTCACGAAAAGAGATATAGAGAGCTTCAAGTAACAACG
GAACGACTCACATGTGGTCGGAGAGTACGTTATGAGTACCTTGTGGCCGA
TATTACAACGTCCCCTCATTGCGTGAGGCTGGCAGTATTTGCATAACGTA
TTAGGACGTTTTCGGTGAGGTTGGCAATGTATATACAACCTCCTAACACG
TTGTGCAAACATTGCCAACCTCACCACAGCGTTAATGTTGCAATATCGGC
AACAAGGTAGCCCTCTGGCCACGTGTGACTACTATTGCCGATAAGCCACC
GCGAAGTCACACATCCAGCCATTGAGTTTGATGAATTGCCTCGCTCACGC
TTGACGTAAAATTCGGGAGCACCTCCAGCAATACGTACATACTTTCAGCA
ATATCCGAAGAGATTGATTCGAACCCATGAGATACCTTTTGTCCGACTTG
TACTGATACCAATCTCGCGCTATTCCAGGAGGAAAACGCCTCCCAATGCT
TAGCGTCTTCCCCCAATTGAACTCCCCCTCGCGGAACTTTCATCGTATTC
GGATTCGGCACGCAGATTCGAGGTGGAGCGGCGCCGAGATCGAACCCGAA
TATCCAGGCTTCTACAAGACGCCCGCACAATCGAGGCAGCACTGCTGCAG
CGAGAACCCTCGACCGCCAACAATAGGCCGTTGAAAAGAGGTTCCCTGCT
AAAACGAGCCTATCATGGCGATTCTGATCCGGTCGGAGATGATGGTGGAA
AGGTTTTCGAATCACTTGGTGGAAGGTCGACGAAATCGAACGCAATTCTA
GAACCTACTGAAGTGCGGGAAGACCCTAATTTTATCTCCACCGGACAGGT
GAACCGGTGCGTAGAGACAGCGGAGCACAGGGTGTCAAAAAAAGTAGTCA
TGTTCTGTCCACCGTGATAGTATCATTGAGAATAGAGAATACAGATCGCA
TCATGTCAGTGTCTGCTTATCGGGCCGTCTGCTAGCTCTGCTACATCGCT
GACAAACTAGAATTCTGAGTGGCTCTTAACAAATTCACGGCGCCGTTACG
ATCCCCAAACTGCATCCTCGCACGGTGACACAGATGCGTTTCTTGAAGTA
CGTGTACAAGACGGTAGAAGGCCACAAGGTAGAGAAGGTACACGAGAAGA
AGATGACCCAGTTTACAGAAGATCGACGAAAAAAGAAGGATCGCACACGT
GAATTATCTCGGAGCATTGGCCGAAGACAAGGAATATGCTCCTCAAGTGC
AGATCAAGTCCCCAACGGTCGAGGAAAACCAGTCAACACGGGTGTATCAT
CCCTTTCCGGTAGTACGGGTGAAAATCAAATTCCTACCGCAGGACAGAGC
AAGGGAAAACGGCGACTTTTAGAACAAAAACGAGGAATTCTTCTCGAAAT
AAAGGATCTTGTGTCCCGACAGACTGAGACCATAGATCGATTGGCGGAGG
GATGCGGTGACACCACGAGAAATAGAAAAACCTCCAGGTCCGTCGTGTAT
ACCGGTCGAGCTGGGAGGAGCTTGATGTCTAGTAGTCGCGGTACGTCCAT
GGTGTCTTCGTCCGTACCATCATCATCGCGCCGTCAGAGTCAATTACCGC
AAACTCGTTGCAGCAGCACCGGAAGAAACGCAATAACGCCGCTGCCACCG
CTGCCATCGCCACCAGAACAAAGCGCTACTTCCAAATTTTTAACGTTGGG
AGGCCGGTGGGAGAACACGACAGTCGAGGAACGTGTGTGTAGGCATCGTA
GCTCGATTGCATCATCTGCTTCGTATGCTTCGTACGGCGAGCGGGACAAC
GAGCGC
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Coding sequence (CDS) from alignment at H-paniculata_contig1924:4217..7422-

>mRNA_H-paniculata_contig1924.4848.1 ID=mRNA_H-paniculata_contig1924.4848.1|Name=mRNA_H-paniculata_contig1924.4848.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2274bp|location=Sequence derived from alignment at H-paniculata_contig1924:4217..7422- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCATTACTGAAAAGGCGACATGCTGAACACTTGCTCGAGGTAGTCCATAA
GGCCGAGAAGCGGGAATGGGAGCGACAACAGAAATATTTACACTCCACCA
GTAAAGATCGAACACAGCACCTTCATGCAAGGCATTACTGAAAAGGCGAC
ATGCTGAACACTTGCTCGAGGTAGTCCATAAGGCCGAGAAGCGGGAATGG
GAGCGACAACAGAAATATTTACACTCCACCAGTAAAGATCGAACACAGCA
CCTTCATGCAAGATTCGAGGTGGAGCGGCGCCGAGATCGAACCCGAATAT
CCAGGCTTCTACAAGACGCCCGCACAATCGAGGCAGCACTGCTGCAGCGA
GAACCCTCGACCGCCAACAATAGGCCGTTGAAAAGAGGTTCCCTGCTAAA
ACGAGCCTATCATGGCGATTCTGATCCGGTCGGAGATGATGGTGGAAAGG
TTTTCGAATCACTTGGTGGAAGGTCGACGAAATCGAACGCAATTCTAGAA
CCTACTGAAGTGCGGGAAGACCCTAATTTTATCTCCACCGGACAGATTCG
AGGTGGAGCGGCGCCGAGATCGAACCCGAATATCCAGGCTTCTACAAGAC
GCCCGCACAATCGAGGCAGCACTGCTGCAGCGAGAACCCTCGACCGCCAA
CAATAGGCCGTTGAAAAGAGGTTCCCTGCTAAAACGAGCCTATCATGGCG
ATTCTGATCCGGTCGGAGATGATGGTGGAAAGGTTTTCGAATCACTTGGT
GGAAGGTCGACGAAATCGAACGCAATTCTAGAACCTACTGAAGTGCGGGA
AGACCCTAATTTTATCTCCACCGGACAGATGCGTTTCTTGAAGTACGTGT
ACAAGACGGTAGAAGGCCACAAGGTAGAGAAGGTACACGAGAAGAAGATG
ACCCAGTTTACAGAAGATCGACGAAAAAAGAAGGATCGCACACGTGAATT
ATCTCGGAGCATTGGCCGAAGACAAGGAATATGCTCCTCAAGTGCAGATC
AAGTCCCCAACGGTCGAGGAAAACCAGTCAACACGGGTGTATCATCCCTT
TCCGGTAGTACGGGTGAAAATCAAATTCCTACCGCAGGACAGAGCAAGGG
AAAACGGCGACTTTTAGAACAAAAACGAGGAATTCTTCTCGAAATAAAGG
ATCTTGTGTCCCGACAGACTGAGACCATAGATCGATTGGCGGAGGGATGC
GGTGACACCACGAGAAATAGAAAAACCTCCAGGTCCGTCGTGTATACCGG
TCGAGCTGGGAGGAGCTTGATGTCTAGTAGTCGCGGTACGTCCATGGTGT
CTTCGTCCGTACCATCATCATCGCGCCGTCAGAGTCAATTACCGCAAACT
CGTTGCAGCAGCACCGGAAGAAACGCAATAACGCCGCTGCCACCGCTGCC
ATCGCCACCAGAACAAAGCGCTACTTCCAAATTTTTAACGTTGGGAGGCC
GGTGGGAGAACACGACAGTCGAGGAACGTGTGTGTAGGCATCGTAGCTCG
ATTGCATCATCTGCTTCGTATGCTTCGTACGGCGAGCGGGACAACGAGCG
CATGCGTTTCTTGAAGTACGTGTACAAGACGGTAGAAGGCCACAAGGTAG
AGAAGGTACACGAGAAGAAGATGACCCAGTTTACAGAAGATCGACGAAAA
AAGAAGGATCGCACACGTGAATTATCTCGGAGCATTGGCCGAAGACAAGG
AATATGCTCCTCAAGTGCAGATCAAGTCCCCAACGGTCGAGGAAAACCAG
TCAACACGGGTGTATCATCCCTTTCCGGTAGTACGGGTGAAAATCAAATT
CCTACCGCAGGACAGAGCAAGGGAAAACGGCGACTTTTAGAACAAAAACG
AGGAATTCTTCTCGAAATAAAGGATCTTGTGTCCCGACAGACTGAGACCA
TAGATCGATTGGCGGAGGGATGCGGTGACACCACGAGAAATAGAAAAACC
TCCAGGTCCGTCGTGTATACCGGTCGAGCTGGGAGGAGCTTGATGTCTAG
TAGTCGCGGTACGTCCATGGTGTCTTCGTCCGTACCATCATCATCGCGCC
GTCAGAGTCAATTACCGCAAACTCGTTGCAGCAGCACCGGAAGAAACGCA
ATAACGCCGCTGCCACCGCTGCCATCGCCACCAGAACAAAGCGCTACTTC
CAAATTTTTAACGTTGGGAGGCCGGTGGGAGAACACGACAGTCGAGGAAC
GTGTGTGTAGGCATCGTAGCTCGATTGCATCATCTGCTTCGTATGCTTCG
TACGGCGAGCGGGACAACGAGCGC
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