mRNA_H-paniculata_contig19205.4838.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19205.4838.1
Unique NamemRNA_H-paniculata_contig19205.4838.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig19205.4838.1 vs. uniprot
Match: D7FHI1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHI1_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 4.050e-18
Identity = 35/40 (87.50%), Postives = 40/40 (100.00%), Query Frame = 1 
Query:    4 VRIHQFDKLGGGGGFGLFHPNGNEVLVDEGVWDLRTHRLV 123
            +R++QFDKLGGGGGFGLFHPNGNEV+VDEGVWDLRTHRL+
Sbjct:  208 LRVYQFDKLGGGGGFGLFHPNGNEVVVDEGVWDLRTHRLL 247
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BLAST of mRNA_H-paniculata_contig19205.4838.1 vs. uniprot
Match: A0A6H5JDL7_9PHAE (LisH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDL7_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 4.170e-18
Identity = 35/40 (87.50%), Postives = 40/40 (100.00%), Query Frame = 1 
Query:    4 VRIHQFDKLGGGGGFGLFHPNGNEVLVDEGVWDLRTHRLV 123
            +R++QFDKLGGGGGFGLFHPNGNEV+VDEGVWDLRTHRL+
Sbjct: 2105 LRVYQFDKLGGGGGFGLFHPNGNEVVVDEGVWDLRTHRLL 2144
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BLAST of mRNA_H-paniculata_contig19205.4838.1 vs. uniprot
Match: F0VZP7_9STRA (Uncharacterized protein AlNc14C3G376 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0VZP7_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.290e-8
Identity = 24/41 (58.54%), Postives = 31/41 (75.61%), Query Frame = 1 
Query:    1 KVRIHQFDKLGGGGGFGLFHPNGNEVLVDEGVWDLRTHRLV 123
            K  +H+FDKL   G  G FHPNGNEV+++  VWDLRT+RL+
Sbjct: 1531 KTAVHKFDKLSNAGN-GFFHPNGNEVVINAAVWDLRTYRLL 1570
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BLAST of mRNA_H-paniculata_contig19205.4838.1 vs. uniprot
Match: A0A024G1Q1_9STRA (LisH domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G1Q1_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 1.770e-8
Identity = 24/41 (58.54%), Postives = 31/41 (75.61%), Query Frame = 1 
Query:    1 KVRIHQFDKLGGGGGFGLFHPNGNEVLVDEGVWDLRTHRLV 123
            K  +H+FDKL   G  G FHPNGNEV+++  VWDLRT+RL+
Sbjct: 1538 KTALHKFDKLSNAGN-GFFHPNGNEVVINAAVWDLRTYRLL 1577
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BLAST of mRNA_H-paniculata_contig19205.4838.1 vs. uniprot
Match: A0A662Y0Y0_9STRA (LisH domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y0Y0_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 1.580e-7
Identity = 23/38 (60.53%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:   10 IHQFDKLGGGGGFGLFHPNGNEVLVDEGVWDLRTHRLV 123
            +++FDKL   G +G FHPNGNEV+V+  VWDLRT+RL+
Sbjct: 1423 LYKFDKLSNVG-YGFFHPNGNEVIVNSAVWDLRTYRLL 1459
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BLAST of mRNA_H-paniculata_contig19205.4838.1 vs. uniprot
Match: A0A3R7MTZ6_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7MTZ6_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 2.160e-7
Identity = 22/38 (57.89%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:   10 IHQFDKLGGGGGFGLFHPNGNEVLVDEGVWDLRTHRLV 123
            +++FDKL   G +G FHPNGNEV+++  VWDLRT+RL+
Sbjct:  175 LYKFDKLSNVG-YGFFHPNGNEVIINSAVWDLRTYRLL 211
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BLAST of mRNA_H-paniculata_contig19205.4838.1 vs. uniprot
Match: A0A6G0LG48_9STRA (LisH domain-containing protein n=4 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0LG48_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 7.570e-7
Identity = 23/38 (60.53%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:   10 IHQFDKLGGGGGFGLFHPNGNEVLVDEGVWDLRTHRLV 123
            +++FDKL   G  G FHPNGNEV+V+  VWDLRT+RL+
Sbjct: 1427 LYKFDKLSNVG-CGFFHPNGNEVIVNSAVWDLRTYRLL 1463
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BLAST of mRNA_H-paniculata_contig19205.4838.1 vs. uniprot
Match: A0A3M6VCW5_9STRA (LisH domain-containing protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VCW5_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 7.580e-7
Identity = 23/38 (60.53%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:   10 IHQFDKLGGGGGFGLFHPNGNEVLVDEGVWDLRTHRLV 123
            +++FDKL   G  G FHPNGNEV+V+  VWDLRT+RL+
Sbjct: 1412 LYKFDKLSNVG-CGFFHPNGNEVIVNSAVWDLRTYRLL 1448
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BLAST of mRNA_H-paniculata_contig19205.4838.1 vs. uniprot
Match: G5A448_PHYSP (LisH domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G5A448_PHYSP)

HSP 1 Score: 52.8 bits (125), Expect = 7.580e-7
Identity = 23/38 (60.53%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:   10 IHQFDKLGGGGGFGLFHPNGNEVLVDEGVWDLRTHRLV 123
            +++FDKL   G  G FHPNGNEV+V+  VWDLRT+RL+
Sbjct: 1425 LYKFDKLSNVG-CGFFHPNGNEVIVNSAVWDLRTYRLL 1461
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BLAST of mRNA_H-paniculata_contig19205.4838.1 vs. uniprot
Match: A0A225WHN8_9STRA (LisH domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WHN8_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 7.580e-7
Identity = 23/38 (60.53%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:   10 IHQFDKLGGGGGFGLFHPNGNEVLVDEGVWDLRTHRLV 123
            +++FDKL   G  G FHPNGNEV+V+  VWDLRT+RL+
Sbjct: 1407 LYKFDKLSNFG-CGFFHPNGNEVIVNSAVWDLRTYRLL 1443
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19205.4838.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
D7FHI1_ECTSI4.050e-1887.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JDL7_9PHAE4.170e-1887.50LisH domain-containing protein n=1 Tax=Ectocarpus ... [more]
F0VZP7_9STRA1.290e-858.54Uncharacterized protein AlNc14C3G376 n=1 Tax=Albug... [more]
A0A024G1Q1_9STRA1.770e-858.54LisH domain-containing protein n=1 Tax=Albugo cand... [more]
A0A662Y0Y0_9STRA1.580e-760.53LisH domain-containing protein n=2 Tax=Nothophytop... [more]
A0A3R7MTZ6_9STRA2.160e-757.89Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
A0A6G0LG48_9STRA7.570e-760.53LisH domain-containing protein n=4 Tax=Phytophthor... [more]
A0A3M6VCW5_9STRA7.580e-760.53LisH domain-containing protein n=2 Tax=Peronospora... [more]
G5A448_PHYSP7.580e-760.53LisH domain-containing protein n=1 Tax=Phytophthor... [more]
A0A225WHN8_9STRA7.580e-760.53LisH domain-containing protein n=1 Tax=Phytophthor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19205contigH-paniculata_contig19205:630..752 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score86.3
Seed ortholog evalue3.7e-15
Seed eggNOG ortholog2880.D7FHI1
Preferred nameVPRBP
KEGG koko:K10744,ko:K11789
KEGG Pathwayko03030,map03030
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000122,GO:0000151,GO:0001650,GO:0001775,GO:0002200,GO:0002376,GO:0002520,GO:0002521,GO:0002562,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0006139,GO:0006259,GO:0006310,GO:0006325,GO:0006355,GO:0006357,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007275,GO:0008134,GO:0008150,GO:0008152,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016301,GO:0016310,GO:0016444,GO:0016569,GO:0016570,GO:0016572,GO:0016740,GO:0016772,GO:0016773,GO:0018107,GO:0018193,GO:0018210,GO:0019219,GO:0019222,GO:0019538,GO:0030097,GO:0030098,GO:0030154,GO:0030183,GO:0030331,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031461,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033151,GO:0034641,GO:0035173,GO:0035184,GO:0035212,GO:0035257,GO:0035258,GO:0035405,GO:0036211,GO:0040008,GO:0042113,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0045321,GO:0045892,GO:0045934,GO:0046483,GO:0046649,GO:0048513,GO:0048519,GO:0048523,GO:0048534,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0051427,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0080008,GO:0080090,GO:0090304,GO:0140096,GO:1901360,GO:1901564,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:1990164,GO:1990234,GO:1990244,GO:1990245,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.histone kinase activity (H2A-T120 specific)
EggNOG OGsKOG1832@1,KOG1832@2759
Ec32 ortholog descriptionQuinonprotein alcohol dehydrogenase-like superfamily
Ec32 orthologEc-25_002290.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03032,ko04121
Exons1
Model size123
Cds size123
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929468.2246587-CDS-H-paniculata_contig19205:629..7521622929468.2246587-CDS-H-paniculata_contig19205:629..752Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19205 630..752 -
1691480874.605874-CDS-H-paniculata_contig19205:629..7521691480874.605874-CDS-H-paniculata_contig19205:629..752Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19205 630..752 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19205.4838.1prot_H-paniculata_contig19205.4838.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19205 630..752 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19205.4838.1

>prot_H-paniculata_contig19205.4838.1 ID=prot_H-paniculata_contig19205.4838.1|Name=mRNA_H-paniculata_contig19205.4838.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=41bp
KVRIHQFDKLGGGGGFGLFHPNGNEVLVDEGVWDLRTHRLV
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mRNA from alignment at H-paniculata_contig19205:630..752-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19205.4838.1 ID=mRNA_H-paniculata_contig19205.4838.1|Name=mRNA_H-paniculata_contig19205.4838.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=123bp|location=Sequence derived from alignment at H-paniculata_contig19205:630..752- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGGTTCGAATTCACCAGTTTGACAAGCTGGGAGGAGGTGGTGGATTTGG
CCTCTTTCACCCCAACGGTAACGAGGTGCTCGTTGATGAAGGGGTGTGGG
ATCTGCGAACACACAGGTTAGTT
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Coding sequence (CDS) from alignment at H-paniculata_contig19205:630..752-

>mRNA_H-paniculata_contig19205.4838.1 ID=mRNA_H-paniculata_contig19205.4838.1|Name=mRNA_H-paniculata_contig19205.4838.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=246bp|location=Sequence derived from alignment at H-paniculata_contig19205:630..752- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGGTTCGAATTCACCAGTTTGACAAGCTGGGAGGAGGTGGTGGATTTGG
CCTCTTTCACCCCAACGGTAACGAGGTGCTCGTTGATGAAGGGGTGTGGG
ATCTGCGAACACACAGGTTAGTTAAGGTTCGAATTCACCAGTTTGACAAG
CTGGGAGGAGGTGGTGGATTTGGCCTCTTTCACCCCAACGGTAACGAGGT
GCTCGTTGATGAAGGGGTGTGGGATCTGCGAACACACAGGTTAGTT
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