mRNA_H-paniculata_contig19191.4827.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19191.4827.1
Unique NamemRNA_H-paniculata_contig19191.4827.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19191.4827.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19191contigH-paniculata_contig19191:3619..4158 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size541
Cds size522
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929466.932982-UTR-H-paniculata_contig19191:3618..36361622929466.932982-UTR-H-paniculata_contig19191:3618..3636Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19191 3619..3636 +
1691480874.0189579-UTR-H-paniculata_contig19191:3618..36361691480874.0189579-UTR-H-paniculata_contig19191:3618..3636Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19191 3619..3636 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929466.9539785-CDS-H-paniculata_contig19191:3636..41581622929466.9539785-CDS-H-paniculata_contig19191:3636..4158Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19191 3637..4158 +
1691480874.0286863-CDS-H-paniculata_contig19191:3636..41581691480874.0286863-CDS-H-paniculata_contig19191:3636..4158Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19191 3637..4158 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19191.4827.1prot_H-paniculata_contig19191.4827.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19191 3637..4158 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19191.4827.1

>prot_H-paniculata_contig19191.4827.1 ID=prot_H-paniculata_contig19191.4827.1|Name=mRNA_H-paniculata_contig19191.4827.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=174bp
MDQLSRGQSPAEAAGAAVAAAVAGIESSSRPALTDGDDTLSGAVKEESSS
ASTALDSNINSTSTSEEGVAVPPGTAVEASSSLLSPWPAGAQNTSTPATT
TNTSSTSTTDFGEIPPANGVPAVTENGTKSAVPPAPVLPGRPSRRSVVST
SEMPVVEDQNGDAGGRGGREGPRE
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mRNA from alignment at H-paniculata_contig19191:3619..4158+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19191.4827.1 ID=mRNA_H-paniculata_contig19191.4827.1|Name=mRNA_H-paniculata_contig19191.4827.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=540bp|location=Sequence derived from alignment at H-paniculata_contig19191:3619..4158+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTAGGCTACAGGACTAAGATGGATCAACTGTCCAGGGGACAGAGCCCAGC
CGAGGCAGCAGGAGCGGCGGTGGCGGCGGCGGTGGCGGGGATAGAGTCTT
CTTCGCGTCCAGCATTGACGGACGGCGATGATACCTTATCAGGTGCAGTC
AAAGAGGAGTCAAGTTCGGCAAGTACTGCCCTCGATAGTAATATTAATAG
TACTAGTACTAGTGAGGAAGGCGTGGCCGTACCTCCGGGTACTGCTGTCG
AAGCATCATCATCGTTATTATCACCATGGCCAGCTGGAGCCCAGAACACG
TCGACACCTGCTACTACTACTAACACTTCCAGCACTAGTACTACCGATTT
TGGAGAGATACCGCCTGCTAACGGAGTTCCAGCAGTCACTGAAAACGGCA
CAAAATCAGCAGTACCGCCGGCACCTGTGCTCCCGGGGCGTCCCTCCCGT
AGGTCAGTTGTTTCTACTAGCGAAATGCCGGTGGTTGAAGATCAAAATGG
CGATGCGGGAGGGCGAGGAGGGAGGGAAGGGCCGCGAGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig19191:3619..4158+

>mRNA_H-paniculata_contig19191.4827.1 ID=mRNA_H-paniculata_contig19191.4827.1|Name=mRNA_H-paniculata_contig19191.4827.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1044bp|location=Sequence derived from alignment at H-paniculata_contig19191:3619..4158+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATCAACTGTCCAGGGGACAGAGCCCAGCCGAGGCAGCAGGAGCGGC
GGTGGCGGCGGCGGTGGCGGGGATAGAGTCTTCTTCGCGTCCAGCATTGA
CGGACGGCGATGATACCTTATCAGGTGCAGTCAAAGAGGAGTCAAGTTCG
GCAAGTACTGCCCTCGATAGTAATATTAATAGTACTAGTACTAGTGAGGA
AGGCGTGGCCGTACCTCCGGGTACTGCTGTCGAAGCATCATCATCGTTAT
TATCACCATGGCCAGCTGGAGCCCAGAACACGTCGACACCTGCTACTACT
ACTAACACTTCCAGCACTAGTACTACCGATTTTGGAGAGATACCGCCTGC
TAACGGAGTTCCAGCAGTCACTGAAAACGGCACAAAATCAGCAGTACCGC
CGGCACCTGTGCTCCCGGGGCGTCCCTCCCGTAGGTCAGTTGTTTCTACT
AGCGAAATGCCGGTGGTTGAAGATCAAAATGGCGATGCGGGAGGGCGAGG
AGGGAGGGAAGGGCCGCGAGAGATGGATCAACTGTCCAGGGGACAGAGCC
CAGCCGAGGCAGCAGGAGCGGCGGTGGCGGCGGCGGTGGCGGGGATAGAG
TCTTCTTCGCGTCCAGCATTGACGGACGGCGATGATACCTTATCAGGTGC
AGTCAAAGAGGAGTCAAGTTCGGCAAGTACTGCCCTCGATAGTAATATTA
ATAGTACTAGTACTAGTGAGGAAGGCGTGGCCGTACCTCCGGGTACTGCT
GTCGAAGCATCATCATCGTTATTATCACCATGGCCAGCTGGAGCCCAGAA
CACGTCGACACCTGCTACTACTACTAACACTTCCAGCACTAGTACTACCG
ATTTTGGAGAGATACCGCCTGCTAACGGAGTTCCAGCAGTCACTGAAAAC
GGCACAAAATCAGCAGTACCGCCGGCACCTGTGCTCCCGGGGCGTCCCTC
CCGTAGGTCAGTTGTTTCTACTAGCGAAATGCCGGTGGTTGAAGATCAAA
ATGGCGATGCGGGAGGGCGAGGAGGGAGGGAAGGGCCGCGAGAG
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