mRNA_H-paniculata_contig10762.483.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig10762.483.1 vs. uniprot
Match: D7FK51_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK51_ECTSI) HSP 1 Score: 220 bits (561), Expect = 2.510e-57 Identity = 221/604 (36.59%), Postives = 248/604 (41.06%), Query Frame = 1
Query: 37 ASALPTLALETLELGFNNVAAAGVSALMQAAVASPSFMGLSLSGNVLDAEAAKAIQGALAQPRCTLRRLFIDHASLGRASESFIATGVLTNRCLALTTLTGFRLGAAFARLGMPPQVEVFSNDQALEQVRLYWANHGNTATVPSAAGVAASAAVCGGXXXXXXXXXXAGIVSVRSGMGPFQESGAGRGTGRLASLSRAAATVCGGDGASQSRSQTQRASPKGVIGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSSNGCRSTNRYPRYTCLALKQNPLPPPRPC---------PIQQLPFSAAELWSLHQHYFSPSPDHQRCLESPTTNPLGGGGSITPTIAPAPLKS-PGNKIPPIILPATAGGGAGCINGTNGGKDREGPGGXXXXXXXXXAAAGEGFLTGVDGVVGEGAGAGARRSRRSSSLGGEYDDHEDDADSPRPPSKRYRNAS----------TKTRIACFPRVQDRIRALKSKPDERGVLTLLRQLKFLQTGGGGGACNGGDGVSTTLAAPRVGGNLTHADGFPAPTADAMLSGHGRKGRTEGGAVVDGGGSGNVPTNCLADEEIERLLLEEL 1788
A ALPTL LETL++GF++V AGV+ALMQA SPSF LSLSGN LDAEAAKAIQ ALAQPRC+LR L++DH SLGRASE FIA GVL+NR LAL TLTGFRLG++FARLGMPPQV FSNDQALEQ Q+A+P GV GA XXXXXXXXXXXXXXX GCR P I QLPFSAAELWSLHQHYFSP DH SP++ + TP+ + P K+ PG G G NG +D EG G G D VG AGARRS TKTRIACFP V+ R+RALKSKPD+RG+LT+LRQLK LQT G DG P D NV N L D +IER+LLEEL
Sbjct: 470 AIALPTLGLETLDVGFSHVGTAGVAALMQATANSPSFTSLSLSGNALDAEAAKAIQAALAQPRCSLRCLYLDHTSLGRASEGFIANGVLSNRSLALVTLTGFRLGSSFARLGMPPQVANFSNDQALEQ---------------------------------------------------------------------------------------QKANPPGVREGALGAAXXXXXXXXXXXXXXXPGVPRRAV----------------------SEDAGCRGGVGXXXXXXXXXXXXXXAVPEALRASLVEALHQIAQLPFSAAELWSLHQHYFSPPLDHH---PSPSSRSSPTSAASTPSPSTCPSKAGPGRTWAAXXXXXXXXXGGGFPNGLATARDTEGRGSNPAGVLGPPGGGSRGCSGDEDAEVG----AGARRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTKTRIACFPSVEARVRALKSKPDDRGILTVLRQLKHLQTASEEGGKEVXXXXXXXXXXXXXXXXXVVDDGALGPKNDVK----------------------NVLNNVLTDAQIERILLEEL 935
BLAST of mRNA_H-paniculata_contig10762.483.1 vs. uniprot
Match: A0A6H5KVK7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVK7_9PHAE) HSP 1 Score: 188 bits (478), Expect = 2.960e-46 Identity = 218/629 (34.66%), Postives = 255/629 (40.54%), Query Frame = 1
Query: 37 ASALPTLALETLELGFNNVAAAGVSALMQAAVASPSFMGLSLSGNVLDAEAAKAIQGALAQPRCTLRRLFIDHASLGRASESFIATGVLTNRCLALTTLTGFRLGAAFARLGMPPQVEVFSNDQALEQVRLYWANHGNTATVPSAAGVAASAAVCGGXXXXXXXXXXAGIVSVRSGMGPFQ------ESGAGRGTGRLASLSRAAAT---------VCGGDGASQSRSQTQRASPKGVI---------------GGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSSNGCRSTNRYPRYTCLALKQNPLPPPRPCPIQQLPFSAAELWSLHQHYFSPSPDHQRCLESPTTNPLGGGGSITPTIAPAPLKS-PGNK-IPPIILPATAGGGAGCINGTNGGKDREGPGGXXXXXXXXXAAAGEGFLTGVDGVVGEGAGAGARRSRRSSSLGGEYD----------DHEDDADSPRPPSKRYRNASTKTRIACFPRVQDRIRALKSKPDERGVLTLLRQLKFLQTGGGGGACNGGD---GVSTTLAAPRVGGNLTHADGFPAPTADAMLSGHGRKGRTEGGAVVDGGGSGNVPTNCLADEEIERLLLEEL 1788
A ALPTL LETL++GF++V AGV+ALMQA ALAQPRC+LR L +DH SLGRASE FIA GVL+NR LAL TLTGFRLG++FARLGMPPQV FSNDQALEQVRLYWANH N A XXXXXXXXXX + G+ G G + A C G G+ + T++A P G XXX GSS G T R AL+ + + I QLPFSAAELWSLHQHYFSP DH SP++ P + PG G G ++G+ +D EG G D VG AG RRSRRS+S+G E D TRIACFP V+ R+RALKSKPD+RG+LT+LRQLK LQT AC G G DG P + NV N L D +IER+LLEEL
Sbjct: 518 AIALPTLGLETLDVGFSHVGTAGVAALMQA---------------------------ALAQPRCSLRCLCLDHTSLGRASEGFIANGVLSNRSLALVTLTGFRLGSSFARLGMPPQVANFSNDQALEQVRLYWANHVNQAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRDPGDGGSRIGDGAGKDFTGGALNNAHQPQRRQQCMGGGSPTAAVVTEKAIPPHPPSEYRPHHLSRYHQHQGDHQQNANPPGVREAALGAAATGHHGXXXGGRHHPGVSGRAVSADAGCQGGVGSSGG-DGTERAAAAVPEALRASLVEALHQ--IAQLPFSAAELWSLHQHYFSPPLDHH---PSPSSXXXXXXXXXXXXXXXCPSNAGPGRTWAAXXXXXXXXXXGGGFVHGSAIARDTEGRDSNPAGVPGPPGGGSRGCSGDEDAEVG----AGGRRSRRSASMGQEQDLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRIACFPSVEARVRALKSKPDDRGILTVLRQLKHLQT-----ACEEGGKEFGXXXXXXXXXXXXXXVVDDGVLGPKNEVK----------------------NVSNNVLTDAQIERILLEEL 1082
BLAST of mRNA_H-paniculata_contig10762.483.1 vs. uniprot
Match: K0R4D8_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R4D8_THAOC) HSP 1 Score: 120 bits (300), Expect = 3.550e-24 Identity = 64/148 (43.24%), Postives = 97/148 (65.54%), Query Frame = 1
Query: 1 SRQLGDRGAQALASALPTLALETLELGFNNVAAAGVSALMQAAVASPSFMGLSLSGNVLDAEAAKAIQGALAQPRCTLRRLFIDHASLGRASESFIATGVLTNRCLALTTLTGFRLGAAFARLGMPPQVEVFSNDQALEQVRLYWANH 444
+ Q+ DRGAQ A L ++ LE L++GFN + G+ ALM++ + S L+LSGN+LD A+KA+ ALA R T+R+L++DH SL A++ +A G+++N LAL ++GF LGA LG+P +E +SN+Q L+ +RL W H
Sbjct: 593 NNQIKDRGAQLAAVVLTSVNLEVLDMGFNRLTIVGIKALMKSLAENRSLTTLTLSGNILDTNASKAVSYALAYNR-TIRKLYVDHCSLSYAAQRHVAAGIVSNSNLALRVMSGFPLGAIAVTLGLPGAMEKWSNEQVLKFIRLMWDKH 739
BLAST of mRNA_H-paniculata_contig10762.483.1 vs. uniprot
Match: A0A7S2KCJ2_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KCJ2_9STRA) HSP 1 Score: 114 bits (286), Expect = 1.350e-22 Identity = 61/145 (42.07%), Postives = 97/145 (66.90%), Query Frame = 1
Query: 1 SRQLGDRGAQALASALPTLALETLELGFNNVAAAGVSALMQAAVASPSFMGLSLSGNVLDAEAAKAIQGALAQPRCTLRRLFIDHASLGRASESFIATGVLTNRCLALTTLTGFRLGAAFARLGMPPQVEVFSNDQALEQVRLYW 435
+ Q+ DRGAQ A L ++ LE L++GFN + G+ ALM++ + S + L+LSGNVLD A+KA+ ALA + T+++L++DH SL A++ IA G+++N LAL ++GF LGA LG+P +E ++N+Q L+ +R+ W
Sbjct: 351 NNQIRDRGAQLAAVVLTSVELEVLDMGFNRLTIVGIKALMKSLAENCSLLTLTLSGNVLDTNASKAVSYALAYNK-TIQKLYVDHCSLSYAAQRHIAAGIVSNSKLALRVMSGFPLGAISVTLGLPGAMENWTNEQVLKFIRVMW 494
BLAST of mRNA_H-paniculata_contig10762.483.1 vs. uniprot
Match: A0A7S4ALF8_9STRA (Hypothetical protein n=2 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4ALF8_9STRA) HSP 1 Score: 105 bits (263), Expect = 9.750e-20 Identity = 54/149 (36.24%), Postives = 90/149 (60.40%), Query Frame = 1
Query: 1 SRQLGDRGAQALASALPTL-ALETLELGFNNVAAAGVSALMQAAVASPSFMGLSLSGNVLDAEAAKAIQGALAQPRCTLRRLFIDHASLGRASESFIATGVLTNRCLALTTLTGFRLGAAFARLGMPPQVEVFSNDQALEQVRLYWANH 444
+ +GDRGA +A+ +P + +E L++GFN++ G++ LM++ S + LSLSGN +DA AAK++ ALA C+L+ +F+ H S+G + IA G+++N AL L GF +G+ LG P ++ ++N+Q + L W H
Sbjct: 513 NNMIGDRGAHQMAAIIPAMKVIEVLDVGFNSITTPGLTILMKSVAESKKLLSLSLSGNAIDATAAKSVAYALAY-NCSLKSIFLVHCSIGHEEQRHIAAGIVSNSRTALDRLNGFEIGSILLTLGFPEALKNWTNEQVFNFIHLMWDKH 660
BLAST of mRNA_H-paniculata_contig10762.483.1 vs. uniprot
Match: B8BT95_THAPS (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BT95_THAPS) HSP 1 Score: 95.1 bits (235), Expect = 9.030e-18 Identity = 52/117 (44.44%), Postives = 79/117 (67.52%), Query Frame = 1
Query: 1 SRQLGDRGAQALASALPTLALETLELGFNNVAAAGVSALMQAAVASPSFMGLSLSGNVLDAEAAKAIQGALAQPRCTLRRLFIDHASLGRASESFIATGVLTNRCLALTTLTGFRLG 351
+ Q+ DRGAQ A L ++ LE L++GFN + G+ ALM++ + S + L+LSGNVLD A+KA+ ALA + T+R+L++DH SL A++ IA G+++N LAL ++GF LG
Sbjct: 182 NNQIRDRGAQLAAVVLTSVELEVLDIGFNRLTIVGIKALMKSLAENCSLLTLTLSGNVLDTNASKAVSYALAYNK-TIRKLYVDHCSLSYAAQRHIAAGIVSNSNLALRVMSGFPLG 297
BLAST of mRNA_H-paniculata_contig10762.483.1 vs. uniprot
Match: A0A7S4JA02_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JA02_9STRA) HSP 1 Score: 95.9 bits (237), Expect = 1.290e-16 Identity = 61/145 (42.07%), Postives = 85/145 (58.62%), Query Frame = 1
Query: 1 SRQLGDRGAQALASALPTLALETLELGFNNVAAAGVSALMQAAVASPSFMGLSLSGNVLDAEAAKAIQGALAQPRCTLRRLFIDHASLGRASESFIATGVLTNRCLALTTLTGFRLGAAFARLGMPPQVEVFSNDQALEQVRLYW 435
+ ++ DRGAQ A L ++ L L+LGFN V AAGV ALM++ + L+LSG D +AKAI ALA +L D S+G A++ IA G+++N L+L LTGFR+GA A LG+P +E + N + L VR W
Sbjct: 533 NNRIRDRGAQLCAVVLTSVRLAVLDLGFNRVTAAGVKALMKSLAENDGLRELTLSGIKFDTNSAKAISYALAY-NSSLVAFGADKCSVGYAAQRHIAAGIVSNPKLSLRRLTGFRIGAIAATLGLPSALEGWGNSRCLAFVRHMW 676
BLAST of mRNA_H-paniculata_contig10762.483.1 vs. uniprot
Match: B7G2T0_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G2T0_PHATC) HSP 1 Score: 89.0 bits (219), Expect = 1.700e-14 Identity = 53/145 (36.55%), Postives = 86/145 (59.31%), Query Frame = 1
Query: 1 SRQLGDRGAQALASALPTLALETLELGFNNVAAAGVSALMQAAVASPSFMGLSLSGNVLDAEAAKAIQGALAQPRCTLRRLFIDHASLGRASESFIATGVLTNRCLALTTLTGFRLGAAFARLGMPPQVEVFSNDQALEQVRLYW 435
+ +L DRGAQ A L ++ L++L++G N V +AG+ ALM+ + S + L L+G +D ++KA+ ALA +L+ ++ D++ G +++ I G+++N+ L LTGF L LG+P EV+SNDQ L RL W
Sbjct: 456 NNRLRDRGAQLCAVVLTSIPLQSLDIGCNAVTSAGIKALMKNVSENSSLISLGLAGIHIDQNSSKAVSYALAY-NTSLQAVYFDNSHAGYSAQRHIVAGIVSNQSAPLRLLTGFPLAPIAVTLGVPRLPEVWSNDQVLGFFRLMW 599
BLAST of mRNA_H-paniculata_contig10762.483.1 vs. uniprot
Match: A0A7S4EKP8_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EKP8_9STRA) HSP 1 Score: 88.2 bits (217), Expect = 1.790e-14 Identity = 46/118 (38.98%), Postives = 75/118 (63.56%), Query Frame = 1
Query: 1 SRQLGDRGAQALASALPTL-ALETLELGFNNVAAAGVSALMQAAVASPSFMGLSLSGNVLDAEAAKAIQGALAQPRCTLRRLFIDHASLGRASESFIATGVLTNRCLALTTLTGFRLG 351
+ +GDRGA +A+ +P + +E L++GFN++ G++ LM++ S + LSLSGN +DA AAK++ ALA C+L+ +F+ H S+G + IA G+++N AL L GF +G
Sbjct: 439 NNMIGDRGAHQMAAIIPAMKVIEVLDVGFNSITTPGLTILMKSVAESKKLLSLSLSGNAIDATAAKSVAYALAY-NCSLKSIFLVHCSIGHEEQRHIAAGIVSNSRTALDRLNGFEIG 555
BLAST of mRNA_H-paniculata_contig10762.483.1 vs. uniprot
Match: A0A1Z5K171_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K171_FISSO) HSP 1 Score: 88.2 bits (217), Expect = 2.780e-14 Identity = 53/146 (36.30%), Postives = 87/146 (59.59%), Query Frame = 1
Query: 1 SRQLGDRGAQALASALPTLALETLELGFN-NVAAAGVSALMQAAVASPSFMGLSLSGNVLDAEAAKAIQGALAQPRCTLRRLFIDHASLGRASESFIATGVLTNRCLALTTLTGFRLGAAFARLGMPPQVEVFSNDQALEQVRLYW 435
+ ++ DRGAQ A AL ++ +E L+L FN N++ G+ ALM+ + S L L+G LD ++KA+ ALA +L+ L++D+ ++G AS+ I G+++N+ +L +TGF + LG+P E +SNDQ L +R W
Sbjct: 388 NNRIQDRGAQLCAVALTSIQMEVLDLSFNRNISTTGIKALMKNISENNSLRSLGLAGIHLDQNSSKALSYALAY-NMSLQTLYLDNCNVGYASQRHIVAGIVSNQRASLRLVTGFDIAPIAITLGLPRLPETWSNDQVLGFIRYMW 532 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10762.483.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig10762.483.1 >prot_H-paniculata_contig10762.483.1 ID=prot_H-paniculata_contig10762.483.1|Name=mRNA_H-paniculata_contig10762.483.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=558bp MQAAVASPSFMGLSLSGNVLDAEAAKAIQGALAQPRCTLRRLFIDHASLGback to top mRNA from alignment at H-paniculata_contig10762:352..8551+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig10762.483.1 ID=mRNA_H-paniculata_contig10762.483.1|Name=mRNA_H-paniculata_contig10762.483.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=8200bp|location=Sequence derived from alignment at H-paniculata_contig10762:352..8551+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig10762:352..8551+ >mRNA_H-paniculata_contig10762.483.1 ID=mRNA_H-paniculata_contig10762.483.1|Name=mRNA_H-paniculata_contig10762.483.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3348bp|location=Sequence derived from alignment at H-paniculata_contig10762:352..8551+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |