mRNA_H-paniculata_contig19189.4824.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19189.4824.1
Unique NamemRNA_H-paniculata_contig19189.4824.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig19189.4824.1 vs. uniprot
Match: A0A8F0FDI2_9PHAE (Ribosomal protein S11 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0FDI2_9PHAE)

HSP 1 Score: 169 bits (429), Expect = 2.930e-52
Identity = 83/101 (82.18%), Postives = 93/101 (92.08%), Query Frame = 1
Query:    4 HKIGILYIISTKRNIKCTVVDPVEKEVKTSCSLGAIKIDNKSFITEYERANQMGLLIAQKIQDLKHTKISIVLRGLGINRKAIVKGLERSGFIIDKLIDIT 306
            HKIGILYIISTKRN+KC  VDP EK+VKTSCSLG IK+DNKS +TEYERAN+MGLL+AQKIQD K+TKISI LRGLG+NRKAIVKGLE SGFIIDKL+D+T
Sbjct:   18 HKIGILYIISTKRNVKCAFVDPNEKKVKTSCSLGVIKVDNKSLMTEYERANEMGLLMAQKIQDFKYTKISIFLRGLGLNRKAIVKGLECSGFIIDKLMDMT 118          
BLAST of mRNA_H-paniculata_contig19189.4824.1 vs. uniprot
Match: A0A8F0FC71_9PHAE (Ribosomal protein S11 n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FC71_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 8.880e-14
Identity = 40/104 (38.46%), Postives = 64/104 (61.54%), Query Frame = 1
Query:    1 LHKIGILYIISTKRNIKCTVVDPVEKEVKTSCSLGAIKIDNKSFITE--YERANQMGLLIAQKIQDLKHTKISIVLRGLGINRKAIVKGLERSGFIIDKLIDIT 306
            L+K+G +YI  TKRNI CT+++P+ K+V+TSCSL     DNK    +  Y RA  +G L+A+K  DL + ++ I L G+   + AI++   +    ID ++ +T
Sbjct:   55 LNKLGSVYIKCTKRNIFCTLINPLNKKVETSCSLRVPTYDNKHNERDNLYTRAVLLGRLLAKKTIDLGYKELIIYLTGMNKGQLAIIRSFSKVELEIDSIVLVT 158          
BLAST of mRNA_H-paniculata_contig19189.4824.1 vs. uniprot
Match: Q2TUF3_9PHAE (Ribosomal protein S11 n=1 Tax=Desmarestia viridis TaxID=62313 RepID=Q2TUF3_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 1.830e-12
Identity = 39/104 (37.50%), Postives = 62/104 (59.62%), Query Frame = 1
Query:    1 LHKIGILYIISTKRNIKCTVVDPVEKEVKTSCSLGAIKIDNKSFITE--YERANQMGLLIAQKIQDLKHTKISIVLRGLGINRKAIVKGLERSGFIIDKLIDIT 306
            ++K+G +YI  TKRNI CT+++P  K+V+TSCSL     DNK    +  Y RA  +G L+AQK   L + ++ I L G+   + AI++   +    ID ++ +T
Sbjct:   35 MNKLGSIYIKCTKRNIFCTLINPNNKKVETSCSLRVPAYDNKHNERDNLYTRAVLLGRLLAQKTIALGYKELIIYLTGMNKGQLAIIRSFSKVEIDIDSIVLLT 138          
BLAST of mRNA_H-paniculata_contig19189.4824.1 vs. uniprot
Match: Q2TUB4_DICDH (Ribosomal protein S11 n=1 Tax=Dictyota dichotoma TaxID=2876 RepID=Q2TUB4_DICDH)

HSP 1 Score: 62.8 bits (151), Expect = 2.640e-10
Identity = 32/100 (32.00%), Postives = 58/100 (58.00%), Query Frame = 1
Query:    7 KIGILYIISTKRNIKCTVVDPVEKEVKTSCSLGAIKIDNKSFITEYERANQMGLLIAQKIQDLKHTKISIVLRGLGINRKAIVKGLERSGFIIDKLIDIT 306
            K G++ + +TKRN+  +++D  EK+VK S SLG +K         Y        +  +KIQ+L +T +S++LRGLG++R A++  +      ++++ D T
Sbjct:    6 KKGLICVRTTKRNVLISLIDINEKKVKLSSSLGCLKGTGFDKRANYASVRAFSEIFTRKIQELGYTDVSLMLRGLGVSRVALIHVIRDYNLKLNRITDET 105          
BLAST of mRNA_H-paniculata_contig19189.4824.1 vs. uniprot
Match: A0A8F0FCY4_9PHAE (Ribosomal protein S11 n=1 Tax=Pseudochorda nagaii TaxID=74379 RepID=A0A8F0FCY4_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 7.850e-9
Identity = 37/97 (38.14%), Postives = 56/97 (57.73%), Query Frame = 1
Query:    7 KIGILYIISTKRNIKCTVVDPVEKEVKTSCSLGAIKIDNKSFITE--YERANQMGLLIAQKIQDLKHTKISIVLRGLGIN--RKAIVKGLERSGFII 285
            K G +Y+  TKRN+ CT++D ++K+VKTSCS+     +N+    E  Y R   +G L   K  +L +  ++I L G GIN  R+ +V+GL   G  I
Sbjct:   27 KKGTIYVRCTKRNVFCTLMDTLDKKVKTSCSMRVPAYENEYNERENPYTRGLLLGNLFGDKTIELGYNDLTIYL-GAGINKGRRGVVRGLGEKGIKI 122          
BLAST of mRNA_H-paniculata_contig19189.4824.1 vs. uniprot
Match: A0A8F0FBN4_AKKLU (Ribosomal protein S11 n=1 Tax=Akkesiphycus lubricus TaxID=3022 RepID=A0A8F0FBN4_AKKLU)

HSP 1 Score: 57.0 bits (136), Expect = 6.030e-8
Identity = 35/97 (36.08%), Postives = 57/97 (58.76%), Query Frame = 1
Query:    7 KIGILYIISTKRNIKCTVVDPVEKEVKTSCSLGAIKIDNKSFITE--YERANQMGLLIAQKIQDLKHTKISIVLRGLGIN--RKAIVKGLERSGFII 285
            K G ++I  +KRN+ CT++D ++K+VKTSCS+     +N+    E  Y R   +G +   K  +L +  ++I L G GIN  R+ +V+GL + G  I
Sbjct:   27 KKGTVFIRCSKRNVFCTLMDTLDKKVKTSCSMRVPAYENEYNERENPYTRGLLLGNMFGNKTSELGYNDLTIYL-GAGINKGRRGVVRGLGQKGIKI 122          
BLAST of mRNA_H-paniculata_contig19189.4824.1 vs. uniprot
Match: A0A4D6C4P6_9CHLO (Ribosomal protein S11 n=4 Tax=cellular organisms TaxID=131567 RepID=A0A4D6C4P6_9CHLO)

HSP 1 Score: 48.1 bits (113), Expect = 7.420e-5
Identity = 33/102 (32.35%), Postives = 49/102 (48.04%), Query Frame = 1
Query:    1 LHKIGILYIISTKRNIKCTVVDPVEKEVKTSCSLGAIKIDNKSFITEYERANQMGLLIAQKIQDLKHTKISIVLRGLGINRKAIVKGLERSGFIIDKLIDIT 306
            + K G +YI +T  N   T+ D   K +  S S G +        T Y  A      +A K +++ HTK+ ++L+GLG  R   V+GL   G  +  LID T
Sbjct:    1 MSKTGNVYINATYNNTILTLTDQSGKTLAWS-SCGCVGFKGSRKATGYA-AQAAAEDLASKAKNISHTKVRVILKGLGKGRDLAVRGLVLGGINVLSLIDTT 100          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19189.4824.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A8F0FDI2_9PHAE2.930e-5282.18Ribosomal protein S11 n=1 Tax=Protohalopteris sp. ... [more]
A0A8F0FC71_9PHAE8.880e-1438.46Ribosomal protein S11 n=1 Tax=Desmarestia aculeata... [more]
Q2TUF3_9PHAE1.830e-1237.50Ribosomal protein S11 n=1 Tax=Desmarestia viridis ... [more]
Q2TUB4_DICDH2.640e-1032.00Ribosomal protein S11 n=1 Tax=Dictyota dichotoma T... [more]
A0A8F0FCY4_9PHAE7.850e-938.14Ribosomal protein S11 n=1 Tax=Pseudochorda nagaii ... [more]
A0A8F0FBN4_AKKLU6.030e-836.08Ribosomal protein S11 n=1 Tax=Akkesiphycus lubricu... [more]
A0A4D6C4P6_9CHLO7.420e-532.35Ribosomal protein S11 n=4 Tax=cellular organisms T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19189contigH-paniculata_contig19189:775..1083 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size309
Cds size309
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929466.5849054-CDS-H-paniculata_contig19189:774..10831622929466.5849054-CDS-H-paniculata_contig19189:774..1083Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19189 775..1083 -
1691480873.8750815-CDS-H-paniculata_contig19189:774..10831691480873.8750815-CDS-H-paniculata_contig19189:774..1083Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19189 775..1083 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19189.4824.1prot_H-paniculata_contig19189.4824.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19189 775..1083 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19189.4824.1

>prot_H-paniculata_contig19189.4824.1 ID=prot_H-paniculata_contig19189.4824.1|Name=mRNA_H-paniculata_contig19189.4824.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=103bp
LHKIGILYIISTKRNIKCTVVDPVEKEVKTSCSLGAIKIDNKSFITEYER
ANQMGLLIAQKIQDLKHTKISIVLRGLGINRKAIVKGLERSGFIIDKLID
IT*
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mRNA from alignment at H-paniculata_contig19189:775..1083-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19189.4824.1 ID=mRNA_H-paniculata_contig19189.4824.1|Name=mRNA_H-paniculata_contig19189.4824.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=309bp|location=Sequence derived from alignment at H-paniculata_contig19189:775..1083- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTACATAAAATAGGTATTTTATATATTATTTCCACAAAAAGAAATATTAA ATGCACTGTTGTTGATCCTGTTGAAAAAGAGGTCAAGACTAGTTGTTCTT TAGGTGCTATAAAAATAGATAATAAATCTTTCATTACTGAGTATGAGCGT GCAAATCAAATGGGATTGCTTATTGCTCAAAAGATTCAAGATTTAAAACA TACTAAAATTTCAATTGTTTTACGTGGTTTAGGTATAAACCGTAAAGCTA TTGTTAAAGGTTTAGAGCGCTCAGGTTTTATTATCGACAAGTTAATAGAT ATCACTTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig19189:775..1083-

>mRNA_H-paniculata_contig19189.4824.1 ID=mRNA_H-paniculata_contig19189.4824.1|Name=mRNA_H-paniculata_contig19189.4824.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=618bp|location=Sequence derived from alignment at H-paniculata_contig19189:775..1083- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTACATAAAATAGGTATTTTATATATTATTTCCACAAAAAGAAATATTAA
ATGCACTGTTGTTGATCCTGTTGAAAAAGAGGTCAAGACTAGTTGTTCTT
TAGGTGCTATAAAAATAGATAATAAATCTTTCATTACTGAGTATGAGCGT
GCAAATCAAATGGGATTGCTTATTGCTCAAAAGATTCAAGATTTAAAACA
TACTAAAATTTCAATTGTTTTACGTGGTTTAGGTATAAACCGTAAAGCTA
TTGTTAAAGGTTTAGAGCGCTCAGGTTTTATTATCGACAAGTTAATAGAT
ATCACTTAATTACATAAAATAGGTATTTTATATATTATTTCCACAAAAAG
AAATATTAAATGCACTGTTGTTGATCCTGTTGAAAAAGAGGTCAAGACTA
GTTGTTCTTTAGGTGCTATAAAAATAGATAATAAATCTTTCATTACTGAG
TATGAGCGTGCAAATCAAATGGGATTGCTTATTGCTCAAAAGATTCAAGA
TTTAAAACATACTAAAATTTCAATTGTTTTACGTGGTTTAGGTATAAACC
GTAAAGCTATTGTTAAAGGTTTAGAGCGCTCAGGTTTTATTATCGACAAG
TTAATAGATATCACTTAA
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