mRNA_H-paniculata_contig19139.4802.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19139.4802.1
Unique NamemRNA_H-paniculata_contig19139.4802.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig19139.4802.1 vs. uniprot
Match: D8LSZ5_ECTSI (Glycosyltransferase, family GT64 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSZ5_ECTSI)

HSP 1 Score: 180 bits (456), Expect = 5.490e-51
Identity = 98/176 (55.68%), Postives = 113/176 (64.20%), Query Frame = 1 
Query:    4 AITSVSGTAPVATFAPVEDIGLLGGISTGEGSGKWWQAPHAVKRSGCLADLNEIFCAHTHHHAPTTRFPPSGDGELQXXXXXXXXTSATCEILRRTSLFASVAALPRRRSFAQVQGRGRGNGLDKE---TVDDLARISRWALAVRAPTLAEFISADMLLVPGKTWRWLTKEDVLGR 522
            A+TSVSG  PVA FAPV D+GL GGIS GEGSGKWWQAPHA KRS CLADL EIFC       P    PP  D + Q         +  CE L RT LFAS    PR  +   ++G  RG G D +   +  DL+R+SRW LAVRAPTLAEF+SADMLLVP K W+W  K+D+ GR
Sbjct:  347 AVTSVSGLPPVAAFAPVVDVGLFGGISIGEGSGKWWQAPHAKKRSRCLADLREIFCDVADE--PLLPPPPFPDNKEQGATDRRRPRTRRCEPLIRTDLFAST---PRATATPSIRGGVRGRGGDGDGNSSRSDLSRLSRWGLAVRAPTLAEFVSADMLLVPAKLWKWFAKDDIRGR 517
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19139.4802.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LSZ5_ECTSI5.490e-5155.68Glycosyltransferase, family GT64 n=2 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19139contigH-paniculata_contig19139:398..3646 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score182.6
Seed ortholog evalue1.6e-43
Seed eggNOG ortholog2880.D8LSZ5
Preferred nameEXTL2
KEGG koko:K02367,ko:K02369,ko:K02370,ko:K04794
KEGG ReactionR05930,R05935,R05936,R10138,R10139
KEGG Pathwayko00534,ko01100,map00534,map01100
KEGG ModuleM00059
Hectar predicted targeting categoryother localisation
GOsGO:0001888,GO:0003674,GO:0003824,GO:0005488,GO:0005539,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006040,GO:0006044,GO:0006139,GO:0006725,GO:0006793,GO:0006807,GO:0006950,GO:0006986,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008194,GO:0008375,GO:0008376,GO:0009225,GO:0009987,GO:0010033,GO:0012505,GO:0016020,GO:0016740,GO:0016757,GO:0016758,GO:0019276,GO:0023052,GO:0030145,GO:0030968,GO:0031984,GO:0033554,GO:0034620,GO:0034641,GO:0034976,GO:0035248,GO:0035966,GO:0035967,GO:0036498,GO:0042175,GO:0042221,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0047237,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0055086,GO:0065007,GO:0070887,GO:0071310,GO:0071704,GO:0097367,GO:0098827,GO:1901071,GO:1901135,GO:1901360
EggNOG free text desc.glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity
EggNOG OGsKOG1022@1,KOG1022@2759
Ec32 ortholog descriptionGlycosyltransferase, family GT64
Ec32 orthologEc-26_001990.1
EC2.4.1.223,2.4.1.224,2.4.1.225,3.1.1.29
COG Functional cat.J
CAZyGT47,GT64
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01003,ko03012
Exons4
Model size531
Cds size531
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19139.4802.1prot_H-paniculata_contig19139.4802.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19139 398..3646 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929464.0836983-CDS-H-paniculata_contig19139:397..5371622929464.0836983-CDS-H-paniculata_contig19139:397..537Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19139 398..537 +
1691480872.700081-CDS-H-paniculata_contig19139:397..5371691480872.700081-CDS-H-paniculata_contig19139:397..537Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19139 398..537 +
1622929464.1003833-CDS-H-paniculata_contig19139:3108..31931622929464.1003833-CDS-H-paniculata_contig19139:3108..3193Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19139 3109..3193 +
1691480872.7144206-CDS-H-paniculata_contig19139:3108..31931691480872.7144206-CDS-H-paniculata_contig19139:3108..3193Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19139 3109..3193 +
1622929464.1112823-CDS-H-paniculata_contig19139:3271..33851622929464.1112823-CDS-H-paniculata_contig19139:3271..3385Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19139 3272..3385 +
1691480872.7257202-CDS-H-paniculata_contig19139:3271..33851691480872.7257202-CDS-H-paniculata_contig19139:3271..3385Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19139 3272..3385 +
1622929464.1220255-CDS-H-paniculata_contig19139:3454..36461622929464.1220255-CDS-H-paniculata_contig19139:3454..3646Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19139 3455..3646 +
1691480872.7389462-CDS-H-paniculata_contig19139:3454..36461691480872.7389462-CDS-H-paniculata_contig19139:3454..3646Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19139 3455..3646 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19139.4802.1

>prot_H-paniculata_contig19139.4802.1 ID=prot_H-paniculata_contig19139.4802.1|Name=mRNA_H-paniculata_contig19139.4802.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=177bp
QAITSVSGTAPVATFAPVEDIGLLGGISTGEGSGKWWQAPHAVKRSGCLA
DLNEIFCAHTHHHAPTTRFPPSGDGELQQQQQQRPPTSATCEILRRTSLF
ASVAALPRRRSFAQVQGRGRGNGLDKETVDDLARISRWALAVRAPTLAEF
ISADMLLVPGKTWRWLTKEDVLGREI*
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mRNA from alignment at H-paniculata_contig19139:398..3646+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19139.4802.1 ID=mRNA_H-paniculata_contig19139.4802.1|Name=mRNA_H-paniculata_contig19139.4802.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3249bp|location=Sequence derived from alignment at H-paniculata_contig19139:398..3646+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGCGATTACGTCAGTGTCGGGGACAGCACCAGTGGCCACGTTTGCTCC
GGTCGAGGACATCGGTCTGCTCGGCGGCATCAGCACGGGAGAGGGGAGCG
GGAAGTGGTGGCAGGCGCCCCATGCTGTCAAACGTTCGGGGTGAGTCCAG
CGTCGAAAAAGCGAAAACCAAAACGAGTTGGAATCTGTCGATTAATGAAC
GCGGTTTTTAAAAATTACTGTTTATTGCTACTGTAGATAGACCCTGTACA
GGCGACGGCGGCACTCGTGGGCACTATGCAAGCGTCGGGGGTCTCGTAGA
CGGCTATTAGTAGACAATTAAGAAACGCGCTGTCCAAGCGCAGGCTTCAT
TTGTTATTTCCTTCGGAAGGGAGGTGTCACTAAACAGACACTAGTTTTAG
AGAGTGATGATCCACTACGCCAAAGGGTTGAAGTAGAACTCTACCTCTGC
TGTAAACATGGATGTATTTATGTAGGTATCATCATATAACAGCGTGTACT
GTACTGCACTGTCAGCTTAGGATGGCTTTATTCTTTAGGATGAAAACTGT
TTCGTTATAATTAACGCAATATATCCCATACCCAAACACCTAATGAGCTT
GAAATATTATTATCTACTGTAGGGATAGAAAACGCCTACTTTCGATATAG
CTGGGATCAGTGAATGTCAAGATGCAGGGCAAAACAGCAAAATCAAGGAG
AATCGTGAATGGCTACTATATTTTTTTCTTTGAACGCCCCATATCTCGGG
AGCAGAGAGATCAATATGAAAAGCACCAGCACTGACCTAAAGCTAATGCC
ATGTACTTTCAGTTACTCTGTTCGAGTCGTACTTGATTCGGTACGTAATA
TCGAGAAAATAGTGAAAACACGTTTCATTCCAAAAACAGAAGAAATCCTA
AACTTGTGGTACTCACTGTCATATGTTGCAGTGAGCACAGCGTATACATC
TGGACGTGGTTTTGCATCCATCAATATTCATTTTTTTTTGTATATATATG
ACACCGAAATGTATACGGTATACCTGACTATGTCTATATATCGAGAACAT
ATTGAAAAATACCTGTGCGTTAGCTTTTTTTCGAGTTTTTTCGAAACGAA
GATGACCAAAAAAGATAGTACGCAAGAAGGAGAATTCGTGCCACAACCCT
TTTTGCGCTAACGGGTAAGTCAGATGCATACGACGTATCGAAAAATTTGA
ATGGCCGCCCAGAAACAACACCGCGAAATTAGCTTAGCTTCCTACGCTGT
ACGAGTCAGACATTAACGTTCGCGGCGTTTTTTTTTTGCGTTTTTGTATG
ATATATATATATATATATATATACTGAAGTATTTCATCTATGGTCGCAGT
TTTATTTTGTTTAATTGGTGTTCGCATTTTTTTGTTTTATCTTGTTTTAT
CAGTTCATGAAAGACATGGGGCACCAATGGCGCTTATTTACTTGAGTCAC
CCTTCAATAAGGGTGGTGATGGTGGTGCTCCTCTCATTGCACTTTCCATC
CCTTATCCTCAGCGTTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTGGTC
GTTTGTGGACGCAACATTCATTTGATCACGGCGCTTGTCCTCTCATGACA
TGGAGCTTGTCTCGCGCGAAATATTGTATCAAAATCTACTACCGCTAGGT
AGACGTGCTCTCCATTGACAGACTTGTCAACCAAAAATCGAGTTTTGAAG
AAGTGGATAGACCCAATCTGCTGCCTAAGCTGCACACTTGCAGCTACAAT
GTCATGCCTACCCTACTAAGCAGGTCCGGAATGTAAAGTCGACTCTTGTT
TCATATTGGCATGATACAGCAGTCTGCAGTAGTATGGTTAAGTCTTGTCG
GCATCTATATTGCGTTTTTCATTTTCCCTCAATTTCCTCATACGTCACGA
ATACAAGGAAGGTATCTCTCTTTCTTTTACAGGCTGAATTCGGTCCTCGC
ACGCACTACCACGGTCACCCTTGAAGATCTCATCTTCGCCCTACTCTAAT
TTTTCTGAACCATTGTTGAGGGGGATGGATACGTCGTTCAGATCCATGTG
CCTTGAACCTGCGGCCAGGTGCTCATGGTAGTCCCCGGCTTGGTATGACC
CATTTTCGCTGCACCACGGCCACACCCGCGAACGAACATAAACATATAAG
TGTGTTCGCAAGAGCAAACAAAGCGCATTGGAAAAAAATCGCCGCGATGT
ACTACAACTCGATAACGCCTCAAGAAGTAATTTTCGTTACATCTCTGTGA
CGCCCGAACTAGCTAACGTGAACACGTTCCTGAGAGCAAACAGAGCGCGT
GGGAAAAAAGCGTCGCCGTAAAAATCCCGAAGAGCTGACTGTTATATTAG
CATCTAACTCGTGCAGCATCGCGAGCTGAACTACTATACAACTCTCTGTC
GTGTTTTTTCGGCTTTCGGCCGGTGATTTCAAAATCCGAGTCTTCCTCAG
CTTGTCTTGCCGGTCTTCTTGCATATTTTCGTGTACCGTAAGCTTGCCAC
ACGTTGTTGGAAACGCTTCGCGTGAAGTACTTATCTACTACTCAGTATAT
GTAATGAATAAACTGACTTCTCCGTCATATATCCCCCCCCCCCCGCCCCA
CTCTAATGTGAACATTGCATGTTTATCCGGGTGGCTTGCCCTTCTGCTTT
TCGTCCCTCCTCCGGCCGCGGCGGCCTGTCTAATCCATGTGACTCCTTCA
CCAACGAACAGATGCCTGGCGGATCTCAACGAGATTTTTTGCGCACACAC
GCACCATCACGCCCCCACCACTAGATTTCCACCGTCTGGCGATGGTGTCC
ATGCCGATACTAAATCAGGCGACGCCGACTTGCCCTTAGACGTGCAACGA
CGACAAACCAAACAAGCACGACAGGAGCTGCAGCAACAGCAGCAACAACG
ACCACCGACTTCAGCAACTTGCGAAATATTGCGCCGTACAAGCCTCTTCG
CGAGTGTTGCGGCGCTCCCACGAAGGCGATCTTTTGCTGTCAAGGAGAAG
GAGCGGGCGGCTAGCGGTGGCGGCGGCGGCGGATTGCGCGGAGCGCAGCC
GCGGCAGCAAGTACAGGGACGGGGGCGGGGGAACGGACTGGATAAGGAGA
CTGTTGATGACTTGGCGCGAATATCGCGGTGGGCGCTAGCTGTGCGTGCG
CCCACCCTGGCGGAGTTTATCAGCGCGGATATGTTGCTTGTACCGGGAAA
GACCTGGCGATGGTTAACCAAGGAAGATGTGCTCGGACGCGAAATTTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig19139:398..3646+

>mRNA_H-paniculata_contig19139.4802.1 ID=mRNA_H-paniculata_contig19139.4802.1|Name=mRNA_H-paniculata_contig19139.4802.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1062bp|location=Sequence derived from alignment at H-paniculata_contig19139:398..3646+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGCGATTACGTCAGTGTCGGGGACAGCACCAGTGGCCACGTTTGCTCC
GGTCGAGGACATCGGTCTGCTCGGCGGCATCAGCACGGGAGAGGGGAGCG
GGAAGTGGTGGCAGGCGCCCCATGCTGTCAAACGTTCGGGCAGGCGATTA
CGTCAGTGTCGGGGACAGCACCAGTGGCCACGTTTGCTCCGGTCGAGGAC
ATCGGTCTGCTCGGCGGCATCAGCACGGGAGAGGGGAGCGGGAAGTGGTG
GCAGGCGCCCCATGCTGTCAAACGTTCGGGATGCCTGGCGGATCTCAACG
AGATTTTTTGCGCACACACGCACCATCACGCCCCCACCACTAGATTTCCA
CCGTCTGGCGATGGTATGCCTGGCGGATCTCAACGAGATTTTTTGCGCAC
ACACGCACCATCACGCCCCCACCACTAGATTTCCACCGTCTGGCGATGGT
GAGCTGCAGCAACAGCAGCAACAACGACCACCGACTTCAGCAACTTGCGA
AATATTGCGCCGTACAAGCCTCTTCGCGAGTGTTGCGGCGCTCCCACGAA
GGCGATCTTTTGCTGAGCTGCAGCAACAGCAGCAACAACGACCACCGACT
TCAGCAACTTGCGAAATATTGCGCCGTACAAGCCTCTTCGCGAGTGTTGC
GGCGCTCCCACGAAGGCGATCTTTTGCTCAAGTACAGGGACGGGGGCGGG
GGAACGGACTGGATAAGGAGACTGTTGATGACTTGGCGCGAATATCGCGG
TGGGCGCTAGCTGTGCGTGCGCCCACCCTGGCGGAGTTTATCAGCGCGGA
TATGTTGCTTGTACCGGGAAAGACCTGGCGATGGTTAACCAAGGAAGATG
TGCTCGGACGCGAAATTTGACAAGTACAGGGACGGGGGCGGGGGAACGGA
CTGGATAAGGAGACTGTTGATGACTTGGCGCGAATATCGCGGTGGGCGCT
AGCTGTGCGTGCGCCCACCCTGGCGGAGTTTATCAGCGCGGATATGTTGC
TTGTACCGGGAAAGACCTGGCGATGGTTAACCAAGGAAGATGTGCTCGGA
CGCGAAATTTGA
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