mRNA_H-paniculata_contig19036.4769.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19036.4769.1
Unique NamemRNA_H-paniculata_contig19036.4769.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19036.4769.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19036contigH-paniculata_contig19036:1707..2035 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size249
Cds size183
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19036.4769.1prot_H-paniculata_contig19036.4769.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19036 1707..1970 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929459.0682185-CDS-H-paniculata_contig19036:1706..17571622929459.0682185-CDS-H-paniculata_contig19036:1706..1757Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19036 1707..1757 +
1691480870.601912-CDS-H-paniculata_contig19036:1706..17571691480870.601912-CDS-H-paniculata_contig19036:1706..1757Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19036 1707..1757 +
1622929459.0856438-CDS-H-paniculata_contig19036:1838..19701622929459.0856438-CDS-H-paniculata_contig19036:1838..1970Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19036 1839..1970 +
1691480870.6106465-CDS-H-paniculata_contig19036:1838..19701691480870.6106465-CDS-H-paniculata_contig19036:1838..1970Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19036 1839..1970 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929459.1017263-UTR-H-paniculata_contig19036:1970..20351622929459.1017263-UTR-H-paniculata_contig19036:1970..2035Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19036 1971..2035 +
1691480870.6192865-UTR-H-paniculata_contig19036:1970..20351691480870.6192865-UTR-H-paniculata_contig19036:1970..2035Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19036 1971..2035 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19036.4769.1

>prot_H-paniculata_contig19036.4769.1 ID=prot_H-paniculata_contig19036.4769.1|Name=mRNA_H-paniculata_contig19036.4769.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=61bp
KTTGTPEKVVTKSTGKKATPKKVIEKPAAKKATPKKVKKPSAKKATPKKV
KKSAAPKPAA*
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mRNA from alignment at H-paniculata_contig19036:1707..2035+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19036.4769.1 ID=mRNA_H-paniculata_contig19036.4769.1|Name=mRNA_H-paniculata_contig19036.4769.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=329bp|location=Sequence derived from alignment at H-paniculata_contig19036:1707..2035+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGACAACCGGGACTCCTGAGAAAGTCGTCACGAAATCCACTGGGAAGAA
GGCTACCCCCAAGAAGGTCATCAAGAAGCCCGCTGCGAAGAAGGCTACCC
CCAAGAAGGTCAAGAAGCCTTCCGCAAAGAAGGCTACCCCCAAGAAGGTC
ATCGAGAAGCCCGCTGCTAAGAAGGCTACCCCCAAGAAGGTCAAGAAGCC
TTCCGCAAAGAAGGCTACCCCCAAGAAAGTCAAGAAGTCTGCTGCTCCTA
AGCCCGCCGCCTGAATTTTGACTCCACTAGAGGCCTGCACGCACGTCTTC
CACCTCGAATCCCGCCCCAACAGGCAACC
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Coding sequence (CDS) from alignment at H-paniculata_contig19036:1707..2035+

>mRNA_H-paniculata_contig19036.4769.1 ID=mRNA_H-paniculata_contig19036.4769.1|Name=mRNA_H-paniculata_contig19036.4769.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=366bp|location=Sequence derived from alignment at H-paniculata_contig19036:1707..2035+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGACAACCGGGACTCCTGAGAAAGTCGTCACGAAATCCACTGGGAAGAA
GAAGACAACCGGGACTCCTGAGAAAGTCGTCACGAAATCCACTGGGAAGA
AGGCTACCCCCAAGAAGGTCATCGAGAAGCCCGCTGCTAAGAAGGCTACC
CCCAAGAAGGTCAAGAAGCCTTCCGCAAAGAAGGCTACCCCCAAGAAAGT
CAAGAAGTCTGCTGCTCCTAAGCCCGCCGCCTGAGCTACCCCCAAGAAGG
TCATCGAGAAGCCCGCTGCTAAGAAGGCTACCCCCAAGAAGGTCAAGAAG
CCTTCCGCAAAGAAGGCTACCCCCAAGAAAGTCAAGAAGTCTGCTGCTCC
TAAGCCCGCCGCCTGA
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