mRNA_H-paniculata_contig190.4758.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig190.4758.1
Unique NamemRNA_H-paniculata_contig190.4758.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig190.4758.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig190contigH-paniculata_contig190:2..989 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size990
Cds size591
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929457.389441-UTR-H-paniculata_contig190:1..3981622929457.389441-UTR-H-paniculata_contig190:1..398Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig190 2..398 +
1691480869.7363465-UTR-H-paniculata_contig190:1..3981691480869.7363465-UTR-H-paniculata_contig190:1..398Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig190 2..398 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929457.4021025-CDS-H-paniculata_contig190:398..9891622929457.4021025-CDS-H-paniculata_contig190:398..989Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig190 399..989 +
1691480869.7473695-CDS-H-paniculata_contig190:398..9891691480869.7473695-CDS-H-paniculata_contig190:398..989Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig190 399..989 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig190.4758.1prot_H-paniculata_contig190.4758.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig190 399..989 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig190.4758.1

>prot_H-paniculata_contig190.4758.1 ID=prot_H-paniculata_contig190.4758.1|Name=mRNA_H-paniculata_contig190.4758.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=197bp
MTSNLRTPLLLTRRFSIQRSVFKHQGTYGKYGNFYRATNFCGEGVEVEKR
SPVRWCDKTGFYGISSCIVVNLESYLVIHQILLPPVGRLPYPPKPRDDCN
VEVRLSNILFNPADTHVVRPSIRAAPNVQTESCIRSIRKVHFRSANPTLQ
YIVFVLRFIFIYFFQCVLSFLIFLIFYDGWFLSCNSLECGFCLLVQC
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mRNA from alignment at H-paniculata_contig190:2..989+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig190.4758.1 ID=mRNA_H-paniculata_contig190.4758.1|Name=mRNA_H-paniculata_contig190.4758.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=988bp|location=Sequence derived from alignment at H-paniculata_contig190:2..989+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCATGCAATACGATATGCACCAATCGGTTGCTGCATGCCTGTGCAAGTGT
TTTTAGAGTGTGTTTTTGTTTTCAGCTAGAAGCGAAAATCTGTAGACCAA
CGGAGAAAAAAAAAAAAGGCTCCTGATTATTATTATTCCTCCGTAATACT
ATATATGCGTGTGCTGTAAAAACCTCTTACTGTTATCGCACCGGGCGGGG
TCAAATTTTTTCTTGTAAAAACGCAGATATTCTCGAAAACGGAGACACTC
GCGCGAACTCCAAATAGCCTGTCTCAATCGGCAAGGTAGATGTCCACAAG
ATAAGTATATTTCTCACGATAGCCCTTTCGTTGTCAATAATCAGAGCAGG
TGGTGACCCCCTATACCTTCTATATATAAGGTATTACACTGAGTAGGATG
ACCTCAAATTTGCGAACGCCTCTTTTGCTCACACGAAGATTTAGTATCCA
AAGATCCGTATTTAAGCATCAAGGTACTTACGGTAAATATGGTAACTTCT
ATAGGGCCACCAACTTTTGTGGAGAGGGGGTTGAGGTTGAAAAACGTTCT
CCCGTACGATGGTGCGACAAGACAGGGTTTTACGGTATTAGCTCTTGTAT
TGTAGTGAATCTCGAATCATATTTAGTAATTCATCAAATTCTGCTCCCGC
CTGTAGGACGCCTTCCGTATCCCCCCAAACCACGAGACGATTGTAACGTA
GAAGTAAGACTTTCGAATATCCTTTTTAATCCGGCCGACACGCATGTAGT
CCGCCCATCGATCCGGGCGGCTCCAAACGTTCAAACAGAGTCGTGCATAC
GATCAATTCGTAAGGTTCATTTTCGATCCGCAAATCCCACCCTACAGTAT
ATTGTTTTTGTTTTGCGTTTTATTTTTATTTATTTTTTTCAGTGCGTGTT
GTCTTTTTTAATTTTTTTAATTTTTTATGATGGATGGTTTCTCTCGTGTA
ACAGCCTTGAGTGTGGGTTTTGTCTTTTAGTCCAGTGC
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Coding sequence (CDS) from alignment at H-paniculata_contig190:2..989+

>mRNA_H-paniculata_contig190.4758.1 ID=mRNA_H-paniculata_contig190.4758.1|Name=mRNA_H-paniculata_contig190.4758.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1182bp|location=Sequence derived from alignment at H-paniculata_contig190:2..989+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACCTCAAATTTGCGAACGCCTCTTTTGCTCACACGAAGATTTAGTAT
CCAAAGATCCGTATTTAAGCATCAAGGTACTTACGGTAAATATGGTAACT
TCTATAGGGCCACCAACTTTTGTGGAGAGGGGGTTGAGGTTGAAAAACGT
TCTCCCGTACGATGGTGCGACAAGACAGGGTTTTACGGTATTAGCTCTTG
TATTGTAGTGAATCTCGAATCATATTTAGTAATTCATCAAATTCTGCTCC
CGCCTGTAGGACGCCTTCCGTATCCCCCCAAACCACGAGACGATTGTAAC
GTAGAAGTAAGACTTTCGAATATCCTTTTTAATCCGGCCGACACGCATGT
AGTCCGCCCATCGATCCGGGCGGCTCCAAACGTTCAAACAGAGTCGTGCA
TACGATCAATTCGTAAGGTTCATTTTCGATCCGCAAATCCCACCCTACAG
TATATTGTTTTTGTTTTGCGTTTTATTTTTATTTATTTTTTTCAGTGCGT
GTTGTCTTTTTTAATTTTTTTAATTTTTTATGATGGATGGTTTCTCTCGT
GTAACAGCCTTGAGTGTGGGTTTTGTCTTTTAGTCCAGTGCATGACCTCA
AATTTGCGAACGCCTCTTTTGCTCACACGAAGATTTAGTATCCAAAGATC
CGTATTTAAGCATCAAGGTACTTACGGTAAATATGGTAACTTCTATAGGG
CCACCAACTTTTGTGGAGAGGGGGTTGAGGTTGAAAAACGTTCTCCCGTA
CGATGGTGCGACAAGACAGGGTTTTACGGTATTAGCTCTTGTATTGTAGT
GAATCTCGAATCATATTTAGTAATTCATCAAATTCTGCTCCCGCCTGTAG
GACGCCTTCCGTATCCCCCCAAACCACGAGACGATTGTAACGTAGAAGTA
AGACTTTCGAATATCCTTTTTAATCCGGCCGACACGCATGTAGTCCGCCC
ATCGATCCGGGCGGCTCCAAACGTTCAAACAGAGTCGTGCATACGATCAA
TTCGTAAGGTTCATTTTCGATCCGCAAATCCCACCCTACAGTATATTGTT
TTTGTTTTGCGTTTTATTTTTATTTATTTTTTTCAGTGCGTGTTGTCTTT
TTTAATTTTTTTAATTTTTTATGATGGATGGTTTCTCTCGTGTAACAGCC
TTGAGTGTGGGTTTTGTCTTTTAGTCCAGTGC
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