mRNA_H-paniculata_contig1899.4749.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1899.4749.1
Unique NamemRNA_H-paniculata_contig1899.4749.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig1899.4749.1 vs. uniprot
Match: D7FVL6_ECTSI (Hypothetical leucine rich repeat and GCG domain-containing receptor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVL6_ECTSI)

HSP 1 Score: 132 bits (331), Expect = 1.010e-32
Identity = 69/143 (48.25%), Postives = 88/143 (61.54%), Query Frame = 1
Query:   31 PLLYAALSYTDVEYTGLEALYNATNGHQWTASGGWRDSTLGVCNWYGVTCDDKSQNVTSLSLSNNNLAGDLSSASELSYMASLEQLDLSSNGLYGAVPVVLGLMPXXXXXXXXXXXXXXFPSTWGSGASXXXXXXXXXXKISG 459
            P  +A+    +V+  GLEALY ATNG  W  S GW D +LGVC+WYGVTCD +  NVT +SLSNN L GD+S A++L+ + SLE++DLS N L G VP+ LG+MP              FP+ WGSGAS          +ISG
Sbjct:   26 PTAFASAYTEEVQIAGLEALYYATNGQDWANSTGWSDDSLGVCSWYGVTCDSEGGNVTGISLSNNLLVGDVSEATDLTNVISLEEMDLSDNQLSGPVPLNLGMMPNMETLDLSGNELSYFPAAWGSGASMLRHLSLQNNRISG 168          
BLAST of mRNA_H-paniculata_contig1899.4749.1 vs. uniprot
Match: D7FVL7_ECTSI (Hypothetical leucine rich repeat and GCG domain-containing receptor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVL7_ECTSI)

HSP 1 Score: 124 bits (312), Expect = 3.540e-30
Identity = 66/136 (48.53%), Postives = 82/136 (60.29%), Query Frame = 1
Query:   52 SYTDVEYTGLEALYNATNGHQWTASGGWRDSTLGVCNWYGVTCDDKSQNVTSLSLSNNNLAGDLSSASELSYMASLEQLDLSSNGLYGAVPVVLGLMPXXXXXXXXXXXXXXFPSTWGSGASXXXXXXXXXXKISG 459
            SY + +  GLEALYNAT G QW +S GWRD+TLGVC+WYGV CD   +NVT L+L+ N LAG+LS A EL  + SL  +DLS N L G V +  GLMP              FP++WG+ AS          +ISG
Sbjct:   29 SYLETQQVGLEALYNATGGEQWASSSGWRDATLGVCDWYGVVCDSDGRNVTGLALAGNGLAGNLSEAVELFDVLSLISIDLSDNELVGPVALGFGLMPDLEVLDLSRNDLSYFPTSWGTEASSLRHLSLQQNEISG 164          
BLAST of mRNA_H-paniculata_contig1899.4749.1 vs. uniprot
Match: A0A7S4JRB2_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4JRB2_9EUKA)

HSP 1 Score: 72.4 bits (176), Expect = 6.480e-12
Identity = 38/93 (40.86%), Postives = 59/93 (63.44%), Query Frame = 1
Query:   61 DVEYTGLEALYNATNGHQWTASGGWRDSTLGVCNWYGVTCDDKSQNVTSLSLSNNNLAGDLSSASELSYMASLEQLDLSSN-GLYGAVPVVLG 336
            D  Y GL   YNATNG  WT    W D+++ VC+WYG+TC + +Q ++ ++L+NNNL G + S + L  +  ++ L+L +N GL G +P  +G
Sbjct:  550 DFLYPGLIEFYNATNGDLWTFKDDWLDTSVTVCDWYGITCLNGTQKISRITLNNNNLNGTIPS-NFLVELVDVQGLNLGNNAGLVGTIPTEVG 641          
BLAST of mRNA_H-paniculata_contig1899.4749.1 vs. uniprot
Match: A0A7S2K7V6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K7V6_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 3.640e-10
Identity = 34/89 (38.20%), Postives = 54/89 (60.67%), Query Frame = 1
Query:   79 LEALYNATNGHQWT-ASGGWRDSTLGVCNWYGVTCDDKSQNVTSLSLSNNNLAGDLSSASELSYMASLEQLDLSSNGLYGAVPVVLGLM 342
            L   +++TNG  W  A  GW +  +  CNW G+TCD+ S  VT +SLSN NL G + S+  + +++ L+ L L SN +  ++P  +GL+
Sbjct:  130 LTRFFHSTNGDTWGGARFGWLNPAIPECNWNGITCDETSNRVTDISLSNQNLTGFIDSS--IGFLSDLKTLQLMSNNIASSIPSEIGLL 216          
BLAST of mRNA_H-paniculata_contig1899.4749.1 vs. uniprot
Match: UPI001F4608E0 (T9SS type A sorting domain-containing protein n=1 Tax=Portibacter sp. 10MBP4-2-1 TaxID=2898660 RepID=UPI001F4608E0)

HSP 1 Score: 67.4 bits (163), Expect = 3.920e-10
Identity = 42/86 (48.84%), Postives = 49/86 (56.98%), Query Frame = 1
Query:   67 EYTGLEALYNATNGHQWTASGGWRDSTLGVCNWYGVTCDDKSQNVTSLSLSNNNLAGDLSSASELSYMASLEQLDLSSNGLYGAVP 324
            +Y  L AL+NAT+G  WT +GGW  S   VCNWYGV C      V SLSLSNNNL G L    EL  M  LE+     N + G +P
Sbjct:   39 DYDALMALFNATDGSNWTNNGGW-GSDCDVCNWYGVGCSGNE--VWSLSLSNNNLVGIL--PDELGQMQYLERFHAWDNQITGGLP 119          
BLAST of mRNA_H-paniculata_contig1899.4749.1 vs. uniprot
Match: UPI00036B865C (T9SS type A sorting domain-containing protein n=1 Tax=Lewinella persica TaxID=70998 RepID=UPI00036B865C)

HSP 1 Score: 66.2 bits (160), Expect = 9.720e-10
Identity = 39/94 (41.49%), Postives = 53/94 (56.38%), Query Frame = 1
Query:   58 TDVEYTGLEALYNATNGHQWTASGGWRDSTLGVCNWYGVTCDDKSQNVTSLSLSNNNLAGDLSSASELSYMASLEQLDLSSNGLYGAVPVVLGL 339
            T  +Y  LEA+YNATNG  WT +  W  +    C W+GVTCD   + V  L L NNNL G L   +EL+ +  +E L  ++N   G VP ++ L
Sbjct:  246 TTPDYNALEAIYNATNGDNWTDNTNWL-TDCDYCTWFGVTCDVNGR-VRRLELPNNNLIGTL--PAELADLTEVEYLRFNNNSFTGGVPNLIAL 335          
BLAST of mRNA_H-paniculata_contig1899.4749.1 vs. uniprot
Match: A0A357KQ35_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A357KQ35_9GAMM)

HSP 1 Score: 64.3 bits (155), Expect = 4.340e-9
Identity = 39/102 (38.24%), Postives = 54/102 (52.94%), Query Frame = 1
Query:   43 AALSYTDVEYTGLEALYNATNGHQWTASGGWRDST----LGVCNWYGVTCDDKSQNVTSLSLSNNNLAGDLSSASELSYMASLEQLDLSSNGLYGAVPVVLG 336
            AA++    E T L  ++ ATNG+ W+ + GW  +     +G   W GV CD     VT L L N NL G+L      + + +L QLDL SN L GA+P  +G
Sbjct:   28 AAVADLASEKTALLEIFTATNGNTWSTNNGWGSANSICGVGTSGWVGVACDTTGDTVTGLDLGNRNLVGELPDG-VFAGLPTLNQLDLRSNHLTGALPGSIG 128          
BLAST of mRNA_H-paniculata_contig1899.4749.1 vs. uniprot
Match: A0A7S2U8K5_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U8K5_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 2.350e-8
Identity = 34/92 (36.96%), Postives = 51/92 (55.43%), Query Frame = 1
Query:   58 TDVEYTGLEALYNATNGHQWTASGGWRDSTLGVCNWYGVTCDDKSQNVTSLSLSNNNLAGDLSSASELSYMASLEQLDLSSNGLYGAVPVVL 333
            T  +   L+A +  TNG QW     W  +++GVC W GV CD+    V +++LS NNLAG L    ++  ++ L  LDL  N + G +P+ L
Sbjct:   45 TSSDDCALQAFFITTNGCQWDDRTNWLSTSVGVCEWNGVNCDNS--RVNTINLSRNNLAGSL--PFQIGGLSDLGSLDLDGNSITGTLPIEL 132          
BLAST of mRNA_H-paniculata_contig1899.4749.1 vs. uniprot
Match: A0A0K0XZP5_9GAMM (Uncharacterized protein n=1 Tax=Wenzhouxiangella marina TaxID=1579979 RepID=A0A0K0XZP5_9GAMM)

HSP 1 Score: 61.2 bits (147), Expect = 4.780e-8
Identity = 38/96 (39.58%), Postives = 57/96 (59.38%), Query Frame = 1
Query:   43 AALSYTDVEYTG-LEALYNATNGHQWTASGGWRDSTLGVCNWYGVTCDDK--SQNVTSLSLSNNNLAGDLSSASELSYMASLEQLDLSSNGLYGAV 321
            +ALS    E T  L   Y AT G  W  + GW DS++ +C+WYGV C+++  S   + LSL +NNL+G ++    + +M   E+LDLS N L G++
Sbjct:   26 SALSPPPPEPTSALVQFYMATGGEDWKRNDGWLDSSVPMCDWYGVVCNNEFGSPVFSGLSLPDNNLSGSINDLDLIHFM--FERLDLSGNALTGSL 119          
BLAST of mRNA_H-paniculata_contig1899.4749.1 vs. uniprot
Match: A0A7S2PTL9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PTL9_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 8.100e-8
Identity = 23/44 (52.27%), Postives = 28/44 (63.64%), Query Frame = 1
Query:   52 SYTDVEYTGLEALYNATNGHQWTASGGWRDSTLGVCNWYGVTCD 183
            SY   E + LEALY  TNG  WT + GW + TL  C WYG++CD
Sbjct:   74 SYDKDERSSLEALYEGTNGQNWTNNAGWMNETLDYCEWYGISCD 117          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1899.4749.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVL6_ECTSI1.010e-3248.25Hypothetical leucine rich repeat and GCG domain-co... [more]
D7FVL7_ECTSI3.540e-3048.53Hypothetical leucine rich repeat and GCG domain-co... [more]
A0A7S4JRB2_9EUKA6.480e-1240.86Hypothetical protein (Fragment) n=1 Tax=Paramoeba ... [more]
A0A7S2K7V6_9STRA3.640e-1038.20Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
UPI001F4608E03.920e-1048.84T9SS type A sorting domain-containing protein n=1 ... [more]
UPI00036B865C9.720e-1041.49T9SS type A sorting domain-containing protein n=1 ... [more]
A0A357KQ35_9GAMM4.340e-938.24Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
A0A7S2U8K5_9STRA2.350e-836.96Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A0K0XZP5_9GAMM4.780e-839.58Uncharacterized protein n=1 Tax=Wenzhouxiangella m... [more]
A0A7S2PTL9_9STRA8.100e-852.27Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1899contigH-paniculata_contig1899:8934..9395 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score134.0
Seed ortholog evalue5.8e-29
Seed eggNOG ortholog2880.D7FVL6
KEGG koko:K17307
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.calcium ion binding
EggNOG OGsKOG1217@1,KOG1217@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04147
Exons1
Model size462
Cds size459
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929456.158551-UTR-H-paniculata_contig1899:8933..89361622929456.158551-UTR-H-paniculata_contig1899:8933..8936Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1899 8934..8936 +
1691480869.1828096-UTR-H-paniculata_contig1899:8933..89361691480869.1828096-UTR-H-paniculata_contig1899:8933..8936Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1899 8934..8936 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929456.1879928-CDS-H-paniculata_contig1899:8936..93951622929456.1879928-CDS-H-paniculata_contig1899:8936..9395Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1899 8937..9395 +
1691480869.196112-CDS-H-paniculata_contig1899:8936..93951691480869.196112-CDS-H-paniculata_contig1899:8936..9395Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1899 8937..9395 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1899.4749.1prot_H-paniculata_contig1899.4749.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1899 8937..9395 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1899.4749.1

>prot_H-paniculata_contig1899.4749.1 ID=prot_H-paniculata_contig1899.4749.1|Name=mRNA_H-paniculata_contig1899.4749.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=153bp
MRLVLCLSFPLLYAALSYTDVEYTGLEALYNATNGHQWTASGGWRDSTLG
VCNWYGVTCDDKSQNVTSLSLSNNNLAGDLSSASELSYMASLEQLDLSSN
GLYGAVPVVLGLMPALKVLDLSGNELSSFPSTWGSGASALRYLSVQGNKI
SG*
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mRNA from alignment at H-paniculata_contig1899:8934..9395+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1899.4749.1 ID=mRNA_H-paniculata_contig1899.4749.1|Name=mRNA_H-paniculata_contig1899.4749.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=462bp|location=Sequence derived from alignment at H-paniculata_contig1899:8934..9395+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TACATGAGGTTGGTGCTATGCCTCTCTTTCCCATTGCTGTACGCCGCACT ATCCTACACCGATGTCGAATATACTGGGCTTGAGGCACTCTACAACGCCA CCAATGGTCATCAGTGGACGGCTTCTGGTGGATGGCGCGATTCTACGCTA GGGGTATGCAATTGGTACGGAGTAACATGTGATGACAAATCCCAAAATGT GACCAGCTTGTCTCTATCAAACAACAACTTGGCCGGCGACCTTTCTTCCG CCAGCGAACTCTCATATATGGCATCGCTCGAACAGTTAGACCTGTCGAGC AACGGACTGTATGGCGCAGTGCCAGTGGTTTTAGGCCTGATGCCTGCACT GAAAGTTCTTGATCTCTCCGGGAATGAGCTCTCCTCATTCCCGTCCACTT GGGGCTCTGGTGCTTCAGCCCTTCGGTACCTTTCCGTCCAAGGAAACAAA ATATCGGGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig1899:8934..9395+

>mRNA_H-paniculata_contig1899.4749.1 ID=mRNA_H-paniculata_contig1899.4749.1|Name=mRNA_H-paniculata_contig1899.4749.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=918bp|location=Sequence derived from alignment at H-paniculata_contig1899:8934..9395+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGGTTGGTGCTATGCCTCTCTTTCCCATTGCTGTACGCCGCACTATC
CTACACCGATGTCGAATATACTGGGCTTGAGGCACTCTACAACGCCACCA
ATGGTCATCAGTGGACGGCTTCTGGTGGATGGCGCGATTCTACGCTAGGG
GTATGCAATTGGTACGGAGTAACATGTGATGACAAATCCCAAAATGTGAC
CAGCTTGTCTCTATCAAACAACAACTTGGCCGGCGACCTTTCTTCCGCCA
GCGAACTCTCATATATGGCATCGCTCGAACAGTTAGACCTGTCGAGCAAC
GGACTGTATGGCGCAGTGCCAGTGGTTTTAGGCCTGATGCCTGCACTGAA
AGTTCTTGATCTCTCCGGGAATGAGCTCTCCTCATTCCCGTCCACTTGGG
GCTCTGGTGCTTCAGCCCTTCGGTACCTTTCCGTCCAAGGAAACAAAATA
TCGGGGTGAATGAGGTTGGTGCTATGCCTCTCTTTCCCATTGCTGTACGC
CGCACTATCCTACACCGATGTCGAATATACTGGGCTTGAGGCACTCTACA
ACGCCACCAATGGTCATCAGTGGACGGCTTCTGGTGGATGGCGCGATTCT
ACGCTAGGGGTATGCAATTGGTACGGAGTAACATGTGATGACAAATCCCA
AAATGTGACCAGCTTGTCTCTATCAAACAACAACTTGGCCGGCGACCTTT
CTTCCGCCAGCGAACTCTCATATATGGCATCGCTCGAACAGTTAGACCTG
TCGAGCAACGGACTGTATGGCGCAGTGCCAGTGGTTTTAGGCCTGATGCC
TGCACTGAAAGTTCTTGATCTCTCCGGGAATGAGCTCTCCTCATTCCCGT
CCACTTGGGGCTCTGGTGCTTCAGCCCTTCGGTACCTTTCCGTCCAAGGA
AACAAAATATCGGGGTGA
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