mRNA_H-paniculata_contig1899.4749.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1899.4749.1 vs. uniprot
Match: D7FVL6_ECTSI (Hypothetical leucine rich repeat and GCG domain-containing receptor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVL6_ECTSI) HSP 1 Score: 132 bits (331), Expect = 1.010e-32 Identity = 69/143 (48.25%), Postives = 88/143 (61.54%), Query Frame = 1
Query: 31 PLLYAALSYTDVEYTGLEALYNATNGHQWTASGGWRDSTLGVCNWYGVTCDDKSQNVTSLSLSNNNLAGDLSSASELSYMASLEQLDLSSNGLYGAVPVVLGLMPXXXXXXXXXXXXXXFPSTWGSGASXXXXXXXXXXKISG 459
P +A+ +V+ GLEALY ATNG W S GW D +LGVC+WYGVTCD + NVT +SLSNN L GD+S A++L+ + SLE++DLS N L G VP+ LG+MP FP+ WGSGAS +ISG
Sbjct: 26 PTAFASAYTEEVQIAGLEALYYATNGQDWANSTGWSDDSLGVCSWYGVTCDSEGGNVTGISLSNNLLVGDVSEATDLTNVISLEEMDLSDNQLSGPVPLNLGMMPNMETLDLSGNELSYFPAAWGSGASMLRHLSLQNNRISG 168
BLAST of mRNA_H-paniculata_contig1899.4749.1 vs. uniprot
Match: D7FVL7_ECTSI (Hypothetical leucine rich repeat and GCG domain-containing receptor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVL7_ECTSI) HSP 1 Score: 124 bits (312), Expect = 3.540e-30 Identity = 66/136 (48.53%), Postives = 82/136 (60.29%), Query Frame = 1
Query: 52 SYTDVEYTGLEALYNATNGHQWTASGGWRDSTLGVCNWYGVTCDDKSQNVTSLSLSNNNLAGDLSSASELSYMASLEQLDLSSNGLYGAVPVVLGLMPXXXXXXXXXXXXXXFPSTWGSGASXXXXXXXXXXKISG 459
SY + + GLEALYNAT G QW +S GWRD+TLGVC+WYGV CD +NVT L+L+ N LAG+LS A EL + SL +DLS N L G V + GLMP FP++WG+ AS +ISG
Sbjct: 29 SYLETQQVGLEALYNATGGEQWASSSGWRDATLGVCDWYGVVCDSDGRNVTGLALAGNGLAGNLSEAVELFDVLSLISIDLSDNELVGPVALGFGLMPDLEVLDLSRNDLSYFPTSWGTEASSLRHLSLQQNEISG 164
BLAST of mRNA_H-paniculata_contig1899.4749.1 vs. uniprot
Match: A0A7S4JRB2_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4JRB2_9EUKA) HSP 1 Score: 72.4 bits (176), Expect = 6.480e-12 Identity = 38/93 (40.86%), Postives = 59/93 (63.44%), Query Frame = 1
Query: 61 DVEYTGLEALYNATNGHQWTASGGWRDSTLGVCNWYGVTCDDKSQNVTSLSLSNNNLAGDLSSASELSYMASLEQLDLSSN-GLYGAVPVVLG 336
D Y GL YNATNG WT W D+++ VC+WYG+TC + +Q ++ ++L+NNNL G + S + L + ++ L+L +N GL G +P +G
Sbjct: 550 DFLYPGLIEFYNATNGDLWTFKDDWLDTSVTVCDWYGITCLNGTQKISRITLNNNNLNGTIPS-NFLVELVDVQGLNLGNNAGLVGTIPTEVG 641
BLAST of mRNA_H-paniculata_contig1899.4749.1 vs. uniprot
Match: A0A7S2K7V6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K7V6_9STRA) HSP 1 Score: 65.9 bits (159), Expect = 3.640e-10 Identity = 34/89 (38.20%), Postives = 54/89 (60.67%), Query Frame = 1
Query: 79 LEALYNATNGHQWT-ASGGWRDSTLGVCNWYGVTCDDKSQNVTSLSLSNNNLAGDLSSASELSYMASLEQLDLSSNGLYGAVPVVLGLM 342
L +++TNG W A GW + + CNW G+TCD+ S VT +SLSN NL G + S+ + +++ L+ L L SN + ++P +GL+
Sbjct: 130 LTRFFHSTNGDTWGGARFGWLNPAIPECNWNGITCDETSNRVTDISLSNQNLTGFIDSS--IGFLSDLKTLQLMSNNIASSIPSEIGLL 216
BLAST of mRNA_H-paniculata_contig1899.4749.1 vs. uniprot
Match: UPI001F4608E0 (T9SS type A sorting domain-containing protein n=1 Tax=Portibacter sp. 10MBP4-2-1 TaxID=2898660 RepID=UPI001F4608E0) HSP 1 Score: 67.4 bits (163), Expect = 3.920e-10 Identity = 42/86 (48.84%), Postives = 49/86 (56.98%), Query Frame = 1
Query: 67 EYTGLEALYNATNGHQWTASGGWRDSTLGVCNWYGVTCDDKSQNVTSLSLSNNNLAGDLSSASELSYMASLEQLDLSSNGLYGAVP 324
+Y L AL+NAT+G WT +GGW S VCNWYGV C V SLSLSNNNL G L EL M LE+ N + G +P
Sbjct: 39 DYDALMALFNATDGSNWTNNGGW-GSDCDVCNWYGVGCSGNE--VWSLSLSNNNLVGIL--PDELGQMQYLERFHAWDNQITGGLP 119
BLAST of mRNA_H-paniculata_contig1899.4749.1 vs. uniprot
Match: UPI00036B865C (T9SS type A sorting domain-containing protein n=1 Tax=Lewinella persica TaxID=70998 RepID=UPI00036B865C) HSP 1 Score: 66.2 bits (160), Expect = 9.720e-10 Identity = 39/94 (41.49%), Postives = 53/94 (56.38%), Query Frame = 1
Query: 58 TDVEYTGLEALYNATNGHQWTASGGWRDSTLGVCNWYGVTCDDKSQNVTSLSLSNNNLAGDLSSASELSYMASLEQLDLSSNGLYGAVPVVLGL 339
T +Y LEA+YNATNG WT + W + C W+GVTCD + V L L NNNL G L +EL+ + +E L ++N G VP ++ L
Sbjct: 246 TTPDYNALEAIYNATNGDNWTDNTNWL-TDCDYCTWFGVTCDVNGR-VRRLELPNNNLIGTL--PAELADLTEVEYLRFNNNSFTGGVPNLIAL 335
BLAST of mRNA_H-paniculata_contig1899.4749.1 vs. uniprot
Match: A0A357KQ35_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A357KQ35_9GAMM) HSP 1 Score: 64.3 bits (155), Expect = 4.340e-9 Identity = 39/102 (38.24%), Postives = 54/102 (52.94%), Query Frame = 1
Query: 43 AALSYTDVEYTGLEALYNATNGHQWTASGGWRDST----LGVCNWYGVTCDDKSQNVTSLSLSNNNLAGDLSSASELSYMASLEQLDLSSNGLYGAVPVVLG 336
AA++ E T L ++ ATNG+ W+ + GW + +G W GV CD VT L L N NL G+L + + +L QLDL SN L GA+P +G
Sbjct: 28 AAVADLASEKTALLEIFTATNGNTWSTNNGWGSANSICGVGTSGWVGVACDTTGDTVTGLDLGNRNLVGELPDG-VFAGLPTLNQLDLRSNHLTGALPGSIG 128
BLAST of mRNA_H-paniculata_contig1899.4749.1 vs. uniprot
Match: A0A7S2U8K5_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U8K5_9STRA) HSP 1 Score: 62.0 bits (149), Expect = 2.350e-8 Identity = 34/92 (36.96%), Postives = 51/92 (55.43%), Query Frame = 1
Query: 58 TDVEYTGLEALYNATNGHQWTASGGWRDSTLGVCNWYGVTCDDKSQNVTSLSLSNNNLAGDLSSASELSYMASLEQLDLSSNGLYGAVPVVL 333
T + L+A + TNG QW W +++GVC W GV CD+ V +++LS NNLAG L ++ ++ L LDL N + G +P+ L
Sbjct: 45 TSSDDCALQAFFITTNGCQWDDRTNWLSTSVGVCEWNGVNCDNS--RVNTINLSRNNLAGSL--PFQIGGLSDLGSLDLDGNSITGTLPIEL 132
BLAST of mRNA_H-paniculata_contig1899.4749.1 vs. uniprot
Match: A0A0K0XZP5_9GAMM (Uncharacterized protein n=1 Tax=Wenzhouxiangella marina TaxID=1579979 RepID=A0A0K0XZP5_9GAMM) HSP 1 Score: 61.2 bits (147), Expect = 4.780e-8 Identity = 38/96 (39.58%), Postives = 57/96 (59.38%), Query Frame = 1
Query: 43 AALSYTDVEYTG-LEALYNATNGHQWTASGGWRDSTLGVCNWYGVTCDDK--SQNVTSLSLSNNNLAGDLSSASELSYMASLEQLDLSSNGLYGAV 321
+ALS E T L Y AT G W + GW DS++ +C+WYGV C+++ S + LSL +NNL+G ++ + +M E+LDLS N L G++
Sbjct: 26 SALSPPPPEPTSALVQFYMATGGEDWKRNDGWLDSSVPMCDWYGVVCNNEFGSPVFSGLSLPDNNLSGSINDLDLIHFM--FERLDLSGNALTGSL 119
BLAST of mRNA_H-paniculata_contig1899.4749.1 vs. uniprot
Match: A0A7S2PTL9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PTL9_9STRA) HSP 1 Score: 57.8 bits (138), Expect = 8.100e-8 Identity = 23/44 (52.27%), Postives = 28/44 (63.64%), Query Frame = 1
Query: 52 SYTDVEYTGLEALYNATNGHQWTASGGWRDSTLGVCNWYGVTCD 183
SY E + LEALY TNG WT + GW + TL C WYG++CD
Sbjct: 74 SYDKDERSSLEALYEGTNGQNWTNNAGWMNETLDYCEWYGISCD 117 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1899.4749.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1899.4749.1 >prot_H-paniculata_contig1899.4749.1 ID=prot_H-paniculata_contig1899.4749.1|Name=mRNA_H-paniculata_contig1899.4749.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=153bp MRLVLCLSFPLLYAALSYTDVEYTGLEALYNATNGHQWTASGGWRDSTLGback to top mRNA from alignment at H-paniculata_contig1899:8934..9395+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1899.4749.1 ID=mRNA_H-paniculata_contig1899.4749.1|Name=mRNA_H-paniculata_contig1899.4749.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=462bp|location=Sequence derived from alignment at H-paniculata_contig1899:8934..9395+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1899:8934..9395+ >mRNA_H-paniculata_contig1899.4749.1 ID=mRNA_H-paniculata_contig1899.4749.1|Name=mRNA_H-paniculata_contig1899.4749.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=918bp|location=Sequence derived from alignment at H-paniculata_contig1899:8934..9395+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |